genome.fa.s3883.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003883.1 Hibiscus syriacus cultivar Beakdansim tig00008374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  195228

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4926--4990	2	33.5	2	93	6	116	49	0	0	50	1.00
6717--6849	3	45.0	3	80	14	152	62	0	0	36	1.01
7220--7656	122	3.7	121	81	8	503	26	18	14	40	1.89
8434--8594	54	3.0	53	85	5	216	27	22	13	36	1.92
8434--8578	53	2.7	52	90	3	209	28	24	12	35	1.91
20429--20464	17	2.1	18	89	5	56	50	0	0	50	1.00
20431--20499	24	2.9	24	81	12	72	44	1	1	52	1.19
22202--22294	3	32.0	3	80	12	97	64	0	1	34	1.01
22220--22294	17	4.4	17	83	8	89	68	0	1	30	0.98
23107--23140	15	2.3	15	89	0	50	67	14	2	14	1.34
23610--23638	13	2.2	13	100	0	58	44	0	6	48	1.29
26540--27683	466	2.5	465	92	1	1862	42	13	18	25	1.87
32059--32095	14	2.5	15	91	8	67	64	0	0	35	0.94
33704--33761	20	2.9	20	92	0	98	25	29	10	34	1.89
35637--35693	5	11.4	5	80	10	55	77	0	1	21	0.86
35637--35693	14	3.8	14	88	9	78	77	0	1	21	0.86
35754--35819	22	2.6	28	72	22	74	51	4	1	42	1.31
35869--35896	2	14.0	2	100	0	56	50	0	0	50	1.00
35803--35882	35	2.2	35	80	14	92	42	5	5	47	1.47
35803--36036	72	2.9	83	77	19	255	44	5	3	46	1.43
35831--36036	36	5.0	45	79	18	156	44	4	3	47	1.41
35878--36122	36	6.7	36	86	7	334	44	4	2	47	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36587--37776	80	14.8	80	85	4	1515	24	18	23	33	1.97
38602--38637	12	2.8	13	83	8	56	55	0	0	44	0.99
39029--39057	15	1.9	15	100	0	58	55	6	0	37	1.27
40127--40194	3	23.0	3	85	8	95	67	1	1	29	1.08
40531--40595	20	3.3	20	66	12	62	26	20	10	43	1.84
40526--41173	113	5.6	112	90	4	781	28	19	14	37	1.91
42362--42399	18	2.1	18	95	0	67	55	5	7	31	1.51
42792--42831	12	3.2	12	92	3	62	5	20	0	75	0.99
42797--42830	10	3.2	10	91	8	50	2	17	0	79	0.86
53493--53550	27	2.2	25	79	8	71	63	0	3	32	1.11
55427--55497	3	24.0	3	85	8	65	60	0	1	38	1.06
56459--56717	95	2.7	96	86	8	357	30	15	18	35	1.92
59344--59370	8	3.4	8	100	0	54	77	11	0	11	0.99
60826--60882	5	10.8	5	75	17	53	78	0	3	17	0.88
60826--60882	11	5.4	10	76	17	53	78	0	3	17	0.88
60848--60882	17	2.1	17	100	0	70	82	0	0	17	0.66
60833--60885	10	5.6	10	77	20	60	79	0	1	18	0.83
60838--60900	27	2.2	28	81	13	76	76	3	0	20	0.93
60941--61030	28	3.4	26	73	21	78	46	4	2	46	1.35
60993--61319	36	8.5	36	76	19	190	44	5	3	46	1.45
61080--61348	36	7.2	36	87	7	335	45	6	2	44	1.44
61081--61306	70	3.1	70	89	6	326	45	4	3	46	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66405--66476	23	3.0	24	75	13	76	34	1	11	52	1.45
67670--67743	36	2.1	36	94	0	130	31	8	8	52	1.60
75682--75755	36	2.1	36	94	0	130	31	8	8	52	1.60
82403--82473	26	3.0	23	71	15	63	35	1	11	52	1.46
83639--83712	36	2.1	36	94	0	130	31	8	8	52	1.60
87596--87636	16	2.6	16	92	3	66	63	0	0	36	0.95
87599--87649	16	3.4	15	86	5	59	62	1	0	35	1.06
88231--88303	33	2.1	34	92	5	121	35	2	6	54	1.41
96672--96715	24	1.9	24	86	9	65	43	2	4	50	1.35
102078--102113	11	3.3	11	96	0	63	33	0	22	44	1.53
106186--106248	32	2.0	32	83	0	81	19	17	23	39	1.92
109407--109613	75	2.7	76	87	3	276	25	31	23	20	1.98
115238--115304	22	3.0	22	95	2	116	25	28	26	19	1.99
115950--116001	2	26.0	2	100	0	104	50	0	0	50	1.00
117018--117062	21	2.1	21	87	0	63	15	24	28	31	1.96
120197--120263	22	3.0	22	95	2	116	25	28	26	19	1.99
120906--120957	2	26.0	2	100	0	104	50	0	0	50	1.00
121970--122014	21	2.1	21	87	0	63	15	24	28	31	1.96
123497--123578	21	3.9	21	76	10	78	23	35	25	15	1.94
125520--125570	9	6.2	8	76	19	52	13	0	27	58	1.36
125522--125565	17	2.6	17	85	7	63	13	0	29	56	1.38
126161--126363	77	2.7	77	89	4	288	23	32	24	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128748--128851	41	2.5	41	80	10	122	27	1	13	56	1.48
129490--129523	17	2.0	17	88	0	50	23	0	2	73	0.97
129594--129634	19	2.2	19	86	4	57	21	9	0	68	1.18
131944--131977	16	2.1	17	89	10	54	29	5	20	44	1.75
132105--132162	30	1.9	30	86	6	82	25	18	20	34	1.96
132965--133019	2	27.5	2	100	0	110	0	0	49	50	1.00
134033--134090	30	1.9	30	86	6	82	27	17	18	36	1.94
134235--134262	8	3.5	8	100	0	56	21	10	14	53	1.70
134235--134270	16	2.2	16	90	0	54	25	8	13	52	1.68
135828--135896	23	3.0	23	89	0	102	26	26	27	20	1.99
136099--136176	30	2.6	30	89	2	111	35	20	3	39	1.71
138836--138873	19	2.0	19	94	0	67	36	0	13	50	1.42
138913--138954	21	2.0	21	95	0	75	26	23	21	28	1.99
139530--139617	23	3.8	23	70	14	72	30	23	25	20	1.98
146092--146140	21	2.3	21	96	0	89	24	26	22	26	2.00
148629--148658	12	2.5	12	100	0	60	43	20	23	13	1.86
148877--148928	15	3.6	14	76	7	50	21	3	3	71	1.18
150917--151021	41	2.5	41	80	10	124	27	0	13	58	1.42
151662--151695	17	2.0	17	88	0	50	23	0	2	73	0.97
151743--151813	10	7.7	9	73	14	56	25	5	0	69	1.10
151733--151818	36	2.5	34	78	14	95	23	5	0	70	1.08
154927--154966	21	1.9	21	94	0	71	42	12	12	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158178--158213	14	2.6	14	90	0	54	30	0	25	44	1.54
166649--166677	15	1.9	15	100	0	58	13	34	13	37	1.85
167574--167600	13	2.1	13	100	0	54	55	0	0	44	0.99
167574--167616	13	3.1	14	86	6	52	55	0	2	41	1.12
167991--168035	13	3.3	13	82	11	63	40	0	6	53	1.27
167991--168040	15	3.4	15	81	13	68	40	2	6	52	1.38
168030--168066	15	2.4	17	82	17	53	43	10	2	43	1.53
168398--168469	14	5.1	14	81	6	65	16	0	31	51	1.45
168398--168469	21	3.4	22	86	7	105	16	0	31	51	1.45
168552--168591	2	19.0	2	85	10	53	45	2	2	50	1.28
168558--168630	22	3.5	20	71	14	58	41	6	6	45	1.57
168738--168892	2	82.0	2	64	20	57	47	5	2	44	1.41
168739--168892	68	2.2	68	75	14	147	47	5	2	44	1.41
169240--169383	2	72.5	2	91	4	229	52	0	0	45	1.10
169704--169763	22	2.7	22	65	0	57	33	25	5	36	1.78
169856--169982	15	8.1	15	68	16	62	44	3	3	48	1.34
169930--169991	13	5.0	13	78	11	76	41	3	4	50	1.40
171167--171234	18	3.7	18	75	15	68	45	1	4	48	1.31
171314--172010	216	3.2	215	93	1	1202	28	13	8	49	1.70
173401--173430	2	15.0	2	100	0	60	50	0	0	50	1.00
190611--190683	20	3.7	20	72	17	71	35	27	16	20	1.94
190596--190683	40	2.3	38	81	13	99	36	26	14	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190676--190729	20	2.6	21	79	8	65	27	25	12	33	1.93
190698--190825	40	3.2	39	81	4	139	27	22	13	36	1.91
190694--190805	20	5.6	20	71	4	73	25	23	12	38	1.90
191245--191295	17	2.9	17	97	2	93	0	31	3	64	1.11
191384--191479	42	2.3	41	82	10	124	37	13	21	27	1.91
191406--191497	20	4.4	20	72	16	71	35	11	23	28	1.91

Tables:   1

The End!