genome.fa.s3884.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003884.1 Hibiscus syriacus cultivar Beakdansim tig00008380_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153911

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4582--4626	23	2.0	22	82	4	54	20	24	24	31	1.98
7901--7939	20	1.9	21	84	5	53	23	2	28	46	1.65
8217--8257	2	20.5	2	100	0	82	51	0	0	48	1.00
8792--8826	2	18.0	2	94	5	63	51	0	0	48	1.00
9201--9372	85	2.0	86	95	4	312	45	12	1	40	1.50
10563--10633	35	2.0	35	97	0	133	22	33	19	23	1.97
12376--12426	25	2.2	24	86	10	70	45	0	5	49	1.26
12848--12874	2	13.5	2	100	0	54	48	0	0	51	1.00
20133--20159	4	6.8	4	100	0	54	74	0	0	25	0.83
25024--25101	31	2.5	31	97	0	147	34	10	16	38	1.83
28542--28594	25	2.2	25	93	6	92	58	3	3	33	1.34
35092--35152	31	2.0	31	93	0	104	47	19	9	22	1.79
35738--35804	11	6.4	11	72	14	61	41	1	1	55	1.18
36286--36390	7	15.0	7	100	0	210	42	28	14	14	1.84
39142--39177	16	2.2	16	95	0	63	22	63	8	5	1.43
45905--45942	15	2.5	16	79	12	53	26	2	2	68	1.16
46798--46919	2	65.0	2	75	12	116	50	0	0	50	1.00
52368--52444	23	3.3	23	79	0	91	33	22	23	20	1.97
52385--52461	23	3.3	23	81	0	100	29	24	25	19	1.98
53907--53965	31	1.9	31	83	10	77	33	6	22	37	1.80
54488--54557	24	2.9	24	95	0	131	32	11	14	41	1.81
55076--55114	7	5.4	7	96	3	69	12	0	28	58	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62267--62315	24	2.0	24	100	0	98	32	12	12	42	1.79
62827--62867	14	2.9	15	78	10	50	21	0	21	56	1.43
65752--65802	21	2.5	20	87	3	75	23	13	23	39	1.91
65782--65846	32	2.0	32	81	0	76	27	18	15	38	1.91
65839--65871	12	2.8	12	95	0	57	42	36	0	21	1.53
67817--67883	20	3.3	19	72	12	53	31	16	28	23	1.96
67934--68103	20	8.5	20	86	1	198	22	17	18	41	1.90
67934--68103	60	2.8	59	86	1	232	22	17	18	41	1.90
67995--68124	20	6.5	21	85	5	87	22	19	16	42	1.89
67934--68123	40	4.8	40	75	8	149	22	17	17	42	1.90
68558--68583	13	2.0	13	100	0	52	38	7	15	38	1.76
71580--71634	27	2.0	28	86	10	78	47	0	3	49	1.19
76556--76595	19	2.1	19	85	0	53	55	7	5	32	1.50
76696--76729	12	2.7	13	86	9	52	41	5	8	44	1.60
77881--77909	15	1.9	15	100	0	58	34	31	0	34	1.58
78579--78611	17	2.1	17	88	11	52	27	3	6	63	1.32
85901--85988	28	3.2	28	66	15	83	36	6	20	36	1.79
85880--85989	55	2.0	55	98	0	211	33	7	22	36	1.82
88215--88251	17	2.1	19	85	10	51	54	8	13	24	1.66
88551--89554	158	6.4	158	82	5	1163	49	5	18	26	1.68
88549--89554	471	2.1	472	86	4	1396	49	5	18	26	1.68
89804--90011	65	3.2	63	81	12	226	32	23	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89983--90031	18	2.7	18	84	12	64	24	22	18	34	1.96
89989--90031	19	2.4	17	85	11	59	23	20	18	37	1.94
91952--91991	21	1.9	21	90	10	64	55	0	7	37	1.29
92020--92291	135	2.0	134	94	0	481	43	9	14	32	1.77
95829--95864	15	2.4	15	100	0	72	38	33	13	13	1.85
95920--95968	19	2.5	20	77	12	57	34	22	16	26	1.95
107376--107447	24	3.0	24	83	0	90	23	18	20	37	1.94
109989--110163	87	2.0	87	100	0	350	40	10	21	27	1.86
111213--111284	24	3.0	24	83	0	90	23	16	20	38	1.92
113084--113175	24	3.8	24	89	0	130	25	15	17	42	1.88
114977--115030	23	2.2	25	83	9	76	46	0	1	51	1.11
115012--115065	20	2.8	18	76	13	54	22	0	5	72	1.05
116036--116083	15	3.3	15	75	19	57	50	0	0	50	1.00
120340--120383	20	2.2	20	84	12	54	65	0	4	29	1.12
123103--123303	21	9.7	21	74	13	166	22	19	22	35	1.96
123122--123303	42	4.4	42	95	1	323	21	20	22	35	1.96
124038--124071	15	2.3	15	94	0	59	0	29	35	35	1.58
124177--124415	21	11.3	21	80	12	178	35	22	20	20	1.96
124170--124335	86	1.9	86	98	0	323	34	23	20	21	1.96
124170--124388	86	2.6	85	89	5	309	35	22	21	21	1.96
124419--124459	21	2.0	21	95	0	73	17	19	29	34	1.94
134546--134594	20	2.5	20	89	0	80	36	16	0	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138026--138056	12	2.6	12	94	0	53	19	38	22	19	1.93
138337--138361	2	12.5	2	100	0	50	48	0	0	52	1.00
138745--138907	57	3.0	53	83	7	200	32	7	20	38	1.82
142049--142085	19	1.9	20	88	5	58	40	2	0	56	1.13
147790--147902	56	2.0	56	100	0	226	40	12	15	30	1.85
149931--149987	29	2.0	29	82	0	69	33	21	19	26	1.97
149938--150132	67	2.9	67	89	0	282	27	22	18	31	1.97
150177--150239	23	2.6	24	78	19	60	50	1	0	47	1.10
150211--150257	22	2.1	23	88	4	69	44	2	0	53	1.12
151565--151589	13	1.9	13	100	0	50	56	0	0	44	0.99
151639--151730	46	2.0	46	83	10	116	69	1	7	21	1.20
151786--151836	24	2.1	24	85	0	66	60	0	15	23	1.35
153122--153375	41	6.6	40	73	15	205	43	3	3	48	1.40
153284--153341	2	30.5	2	89	10	95	46	0	0	53	1.00
153078--153375	116	2.6	115	79	12	292	44	4	4	46	1.43
153247--153407	80	2.0	80	83	7	202	44	4	2	48	1.35
153349--153403	28	1.9	29	92	3	94	49	5	3	41	1.43

Tables:   1

The End!