Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003886.1 Hibiscus syriacus cultivar Beakdansim tig00008388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106545

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23398--23489
29
3.2
29
93
1
150
50
4
10
34
1.57
25196--25251
21
2.7
21
97
0
103
30
0
26
42
1.56
25900--25983
44
1.9
43
82
2
105
28
22
16
32
1.96
35833--35864
3
11.3
3
87
12
50
34
0
0
65
0.93
44606--44663
7
7.7
7
80
16
55
74
0
13
12
1.08
44605--44680
9
9.8
8
78
17
65
75
0
13
11
1.06
44608--44680
38
1.9
37
89
8
112
73
0
13
12
1.09
44604--44692
9
9.8
9
72
17
60
76
0
13
10
1.02
44606--44693
29
2.9
29
80
14
83
76
0
13
10
1.03
44675--44709
13
2.6
13
95
4
61
85
0
14
0
0.59
44605--44692
38
2.3
38
81
11
110
76
0
13
10
1.03
44675--44709
16
2.2
16
94
0
61
85
0
14
0
0.59
46004--46232
55
4.2
55
89
2
363
29
14
28
27
1.95
46004--46217
108
2.0
110
95
1
387
29
15
28
26
1.96
46218--46569
52
6.8
52
94
0
596
28
16
25
29
1.97
46438--46640
52
3.8
53
85
5
166
32
18
24
25
1.97
46961--47231
148
1.8
148
86
4
395
29
19
15
35
1.93
56867--56899
3
11.3
3
87
6
50
33
0
0
66
0.92
56867--56899
17
1.9
17
93
0
57
33
0
0
66
0.92
60532--60563
3
11.3
3
87
12
50
34
0
0
65
0.93
66746--66798
26
2.0
26
85
7
72
20
11
5
62
1.49
69044--69217
88
2.0
88
97
0
330
28
20
20
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71710--71741
12
2.7
12
90
0
55
21
12
9
56
1.64
71710--71775
31
2.1
31
82
0
78
19
12
13
54
1.70
71722--71761
19
2.1
19
95
0
71
17
15
15
52
1.75
80696--80768
36
2.0
36
97
0
137
38
24
12
24
1.90
84503--84611
52
2.1
52
100
0
218
33
10
11
45
1.73
85541--85568
2
14.0
2
100
0
56
50
0
0
50
1.00
86553--86597
13
3.1
15
75
18
58
28
0
0
71
0.87
86551--86606
29
1.9
29
85
7
78
32
0
0
67
0.91
88553--88634
28
3.0
27
69
22
73
50
1
2
46
1.22
93334--93386
23
2.3
23
80
0
61
28
22
28
20
1.99
104976--105035
31
1.9
31
89
0
93
26
15
26
31
1.95
106337--106396
28
2.1
28
93
0
102
28
26
5
40
1.77

Tables:   1

The End!