Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003887.1 Hibiscus syriacus cultivar Beakdansim tig00008394_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95509

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1155--1198
3
14.7
3
86
9
63
63
0
0
36
0.95
1321--1611
103
2.7
103
81
7
316
23
19
16
40
1.91
1359--1611
103
2.4
105
83
5
325
23
18
17
39
1.92
1533--1955
217
2.0
216
85
7
590
26
21
15
36
1.94
2819--2875
8
7.4
8
80
11
66
8
12
0
78
0.95
2800--2856
19
3.2
19
79
18
68
8
12
0
78
0.95
2819--2874
7
8.4
7
81
16
50
8
12
0
78
0.96
2823--2875
15
3.3
16
81
7
72
9
11
0
79
0.94
2819--2882
16
4.2
14
77
18
58
9
10
1
78
1.04
14557--14602
24
1.9
24
100
0
92
50
6
4
39
1.48
15163--15195
2
16.5
2
100
0
66
51
0
0
48
1.00
14969--15178
47
4.4
47
93
2
348
50
11
8
29
1.68
15739--15771
15
2.2
15
89
10
50
69
3
0
27
1.03
17119--17164
3
15.7
3
86
4
67
60
2
0
36
1.09
19788--19864
31
2.5
31
86
0
109
42
3
9
44
1.54
28421--28514
47
2.0
47
97
0
179
42
12
11
32
1.79
32980--33004
2
12.5
2
100
0
50
48
0
0
52
1.00
33277--33353
39
2.0
39
89
0
118
23
42
16
16
1.88
34449--34511
3
21.3
3
76
15
60
26
1
1
69
1.06
34430--34512
34
2.4
33
77
16
89
26
3
2
67
1.19
34449--34514
22
3.1
22
75
18
77
27
1
1
69
1.06
34481--34511
14
2.2
14
94
0
53
29
3
0
67
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34818--34855
17
2.2
17
90
0
58
42
0
0
57
0.98
37019--37057
15
2.7
15
88
4
53
20
15
12
51
1.76
41758--41840
21
3.9
21
73
9
78
18
25
34
21
1.96
49622--49649
2
14.0
2
100
0
56
50
0
0
50
1.00
52243--52500
95
2.8
94
86
4
326
30
14
21
33
1.94
52265--52541
92
3.0
92
86
4
335
29
14
20
35
1.92
52452--52874
114
3.7
114
93
0
686
32
14
20
32
1.93
55401--55455
22
2.5
22
85
5
76
34
12
14
38
1.84
56303--56552
73
3.4
73
84
6
315
27
21
19
32
1.97
56608--57041
123
3.6
114
79
13
396
38
15
21
24
1.92
56717--57041
124
2.6
123
87
5
444
39
14
20
24
1.91
56960--57315
139
2.6
139
85
3
459
39
14
19
26
1.90
57564--57640
39
2.0
39
89
0
118
23
42
16
16
1.88
58717--58791
12
6.5
11
74
10
51
28
4
2
65
1.24
58739--58802
3
22.3
3
77
15
64
26
1
1
70
1.05
58739--58802
14
4.5
15
81
11
64
26
1
1
70
1.05
58878--59100
114
1.9
115
80
8
258
36
8
8
46
1.65
59107--59144
17
2.2
17
90
0
58
42
0
0
57
0.98
64542--64574
14
2.4
14
94
0
57
60
9
0
30
1.27
66038--66070
14
2.4
14
100
0
66
39
9
9
42
1.68
68524--68586
21
2.9
21
73
23
58
30
3
1
65
1.18
68791--68820
11
2.7
11
94
0
51
26
10
6
56
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68875--68936
31
2.0
31
84
12
83
14
12
0
72
1.12
69901--69932
14
2.1
16
88
11
50
15
3
0
81
0.82
71551--72327
387
2.0
387
98
0
1518
33
18
28
19
1.96
72591--72619
15
1.9
15
100
0
58
10
0
0
89
0.48
79625--79669
6
7.8
6
85
14
60
86
13
0
0
0.57
79622--79669
17
2.8
17
87
6
71
87
12
0
0
0.54
79623--79678
23
2.3
23
87
6
76
83
12
3
0
0.76
79622--79669
20
2.4
20
83
16
64
87
12
0
0
0.54
79621--79677
17
3.4
16
79
18
62
84
10
5
0
0.77
79715--79753
10
4.0
9
84
15
51
82
2
15
0
0.79
79715--79762
20
2.5
20
86
10
64
79
2
18
0
0.84
80509--81281
105
7.4
105
96
1
1426
34
24
18
23
1.96
80509--81281
209
3.7
210
96
0
1435
34
24
18
23
1.96
80509--81281
314
2.5
314
96
1
1433
34
24
18
23
1.96
82726--82805
21
3.8
22
71
17
53
28
3
3
63
1.29
82751--82811
20
2.9
21
72
18
54
31
3
1
63
1.20
82837--82888
24
2.1
25
82
10
63
36
7
0
55
1.29
83080--83151
36
2.0
35
82
12
85
16
11
0
72
1.12
84623--84690
21
3.2
21
93
0
118
22
25
25
27
1.99
85494--85525
16
2.1
15
94
5
55
0
46
3
50
1.17
86649--86845
42
4.8
41
75
11
152
32
19
22
24
1.98
86886--87025
41
3.5
40
83
5
185
35
13
19
32
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86885--87025
39
3.6
38
82
9
158
35
13
19
31
1.90

Tables:   1

The End!