genome.fa.s3888.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003888.1 Hibiscus syriacus cultivar Beakdansim tig00008398_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71760

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12--68	14	3.7	14	77	20	60	10	21	22	45	1.82
1--87	33	2.6	33	92	0	147	11	20	20	47	1.81
1--162	19	9.0	19	75	13	146	11	18	22	47	1.80
1--162	33	4.5	38	82	4	146	11	18	22	47	1.80
2052--2087	14	2.7	13	86	4	54	30	0	22	47	1.52
2178--2245	19	3.8	19	77	18	92	48	16	22	13	1.80
2205--2304	14	6.6	14	67	24	60	45	19	25	11	1.82
2186--2266	33	2.5	33	100	0	162	45	18	23	12	1.83
2223--2309	45	2.0	44	97	2	165	43	18	26	11	1.84
2299--2518	19	12.7	19	74	21	200	14	23	17	44	1.86
2305--2461	33	4.6	33	72	18	142	13	24	17	45	1.84
2299--2518	52	4.2	53	92	5	362	14	23	17	44	1.86
2356--2532	33	5.2	33	69	20	141	13	22	18	45	1.84
2299--2518	103	2.1	105	91	5	324	14	23	17	44	1.86
4797--4822	12	2.2	12	100	0	52	0	26	0	73	0.84
4997--5043	24	2.0	24	87	8	69	38	21	14	25	1.92
5735--5963	20	11.4	20	87	1	253	19	17	25	36	1.94
7173--7239	35	1.9	34	90	3	107	34	7	26	31	1.84
7205--7250	15	3.1	15	81	6	67	41	8	19	30	1.82
7578--7648	28	2.7	26	76	18	74	57	1	0	40	1.07
7933--8051	42	2.8	42	93	0	202	45	16	18	19	1.86
10281--10670	185	2.1	185	89	2	597	43	8	3	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11678--11778	51	2.0	50	98	1	193	31	14	17	35	1.91
12168--12212	19	2.4	21	75	24	55	28	2	0	68	1.01
12426--12459	8	4.2	8	84	0	50	41	29	0	29	1.57
16070--16110	21	2.0	21	85	4	57	48	2	12	36	1.54
19447--19498	20	2.6	20	96	0	95	30	23	28	17	1.97
28652--28693	21	2.1	21	86	8	61	42	4	0	52	1.22
34651--34727	32	2.4	32	82	4	84	33	9	24	32	1.87
34679--35090	147	2.8	148	82	3	465	27	14	21	37	1.92
38794--38828	17	2.1	17	100	0	70	40	0	11	48	1.39
39250--39330	29	2.9	28	70	15	69	37	1	9	51	1.43
46049--46092	22	2.0	23	86	4	63	63	6	18	11	1.48
46900--46939	20	2.0	21	95	5	73	50	10	5	35	1.58
47884--47942	31	1.9	31	89	0	91	40	8	10	40	1.69
47967--48009	22	2.0	22	95	0	77	48	13	2	34	1.56
47969--48017	22	2.2	22	85	3	62	53	14	2	30	1.52
47989--49328	32	46.7	32	74	18	981	52	14	0	32	1.44
48023--48071	22	2.2	22	85	3	62	55	12	0	32	1.37
48026--48180	84	1.9	82	92	5	260	52	15	0	31	1.43
47957--49295	116	11.8	112	77	13	649	52	14	0	32	1.44
47986--48556	170	3.3	168	86	7	626	52	14	0	32	1.45
48307--48349	22	2.0	22	100	0	86	51	13	0	34	1.42
48309--48357	22	2.2	22	88	3	71	55	14	0	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48247--49162	206	4.5	205	84	8	1175	53	14	0	32	1.44
48525--48578	14	3.6	14	72	18	54	57	5	0	37	1.22
48683--48725	22	2.0	22	100	0	86	51	13	0	34	1.42
48685--48733	22	2.2	22	88	3	71	55	14	0	30	1.40
48910--48967	18	3.4	18	72	18	61	56	12	0	31	1.35
49087--49129	22	2.0	22	100	0	86	51	13	0	34	1.42
48854--49328	171	2.8	166	81	10	565	53	13	0	32	1.42
49089--49137	22	2.2	22	88	3	71	55	14	0	30	1.40
49143--49217	22	3.2	22	75	14	69	56	16	0	28	1.41
49221--49263	22	2.0	22	100	0	86	51	13	0	34	1.42
49298--49395	15	6.5	15	70	27	82	54	3	0	42	1.16
49240--49354	32	3.4	33	87	7	151	50	8	0	40	1.33
49298--49397	39	2.6	37	85	4	137	55	3	0	42	1.15
50565--50960	21	19.0	20	72	14	209	21	18	23	35	1.95
50683--50960	42	6.6	42	93	1	448	21	19	22	36	1.95
51807--52170	42	8.7	42	93	1	608	36	23	18	20	1.95
52493--52524	13	2.4	13	94	5	55	37	6	0	56	1.25
57270--57317	16	2.9	16	78	3	51	29	4	0	66	1.10
60796--60847	20	2.6	20	90	0	86	42	23	19	15	1.89
60816--61436	183	3.4	182	89	2	942	41	14	15	27	1.87
63397--63451	24	2.4	23	80	11	69	47	0	5	47	1.25
63823--63887	33	2.0	33	93	0	112	26	1	46	26	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64074--64108	18	1.9	18	94	0	61	60	0	34	5	1.21
65662--65711	19	2.6	19	90	3	73	32	0	8	60	1.26
66062--67219	199	5.8	200	83	3	1337	37	13	15	32	1.87
66067--67219	399	2.9	399	83	3	1406	37	14	15	32	1.87

Tables:   1

The End!