genome.fa.s3893.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003893.1 Hibiscus syriacus cultivar Beakdansim tig00008411_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92644

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11137--11591	52	8.8	52	95	1	774	23	14	22	38	1.92
12232--12896	113	5.8	113	94	1	1134	38	14	20	26	1.91
13145--13245	3	34.0	3	83	2	132	33	2	0	63	1.10
26152--26244	42	2.2	43	88	3	134	21	11	18	48	1.80
26444--26528	30	2.8	30	82	8	93	50	2	0	47	1.14
26444--26499	22	2.4	23	85	8	69	46	1	0	51	1.11
26819--26866	20	2.3	20	76	13	53	54	0	0	45	0.99
27067--27112	14	3.2	14	87	3	65	34	17	4	43	1.69
27073--27120	15	3.3	14	85	5	51	35	20	2	41	1.64
30138--30202	30	2.2	30	82	0	76	16	16	10	55	1.69
30169--30273	43	2.5	44	84	7	137	27	13	5	53	1.62
30254--30356	43	2.4	43	95	1	181	22	11	3	62	1.45
30326--30388	32	2.0	32	100	0	126	20	12	0	66	1.24
30254--30377	43	2.9	43	85	3	135	21	11	3	63	1.41
30359--30709	44	8.2	44	74	10	239	25	17	8	49	1.74
30372--30628	131	2.0	129	84	6	340	24	18	8	48	1.76
34401--34452	25	2.0	26	85	3	70	53	1	0	44	1.11
40400--40434	2	18.0	2	94	5	63	51	0	0	48	1.00
41694--41750	20	2.8	20	89	0	87	40	8	24	26	1.84
42756--42884	60	2.2	59	79	8	136	33	15	14	36	1.88
57763--57801	3	13.0	3	100	0	78	33	0	0	66	0.92
58404--58453	2	25.0	2	100	0	100	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60030--60069	21	1.9	21	89	0	62	55	2	2	40	1.27
63977--64017	8	5.2	8	88	5	66	36	0	26	36	1.57
63977--64017	15	2.6	16	84	7	66	36	0	26	36	1.57
64090--65099	128	7.9	128	90	2	1627	23	25	19	31	1.98
64097--65099	256	3.9	256	96	0	1848	23	25	19	31	1.98
65500--65599	34	3.0	33	83	2	128	39	2	4	55	1.30
66002--66031	15	2.0	15	100	0	60	26	13	40	20	1.89
66134--66206	21	3.5	21	85	7	94	20	27	34	17	1.95
66210--66257	21	2.3	21	85	0	60	22	12	39	25	1.89
67980--68056	33	2.4	30	79	10	82	59	1	0	38	1.06
75479--75571	21	4.6	20	78	4	96	38	18	24	18	1.92
75476--75571	41	2.3	41	98	0	183	39	17	23	18	1.92
75479--75571	20	4.6	20	78	4	96	38	18	24	18	1.92
75498--75632	41	3.3	41	81	6	123	37	20	21	20	1.94
75560--75654	20	4.7	20	80	2	91	34	24	17	23	1.96
76149--76186	20	1.9	20	88	0	58	13	15	21	50	1.78
77504--77548	18	2.5	18	85	0	63	26	42	15	15	1.87
78020--78075	20	2.8	20	83	2	69	37	23	23	16	1.93
78075--78132	14	3.9	14	72	16	53	50	24	15	10	1.75
78059--78149	32	2.8	33	89	3	148	48	21	17	12	1.80
78020--78154	19	7.6	19	68	19	67	43	22	20	13	1.86
78161--78271	32	3.4	32	94	1	195	9	18	23	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78161--78312	14	8.9	18	74	18	130	11	20	23	44	1.83
78256--78310	20	2.8	19	89	5	83	16	25	23	34	1.95
80176--80211	14	2.6	14	90	0	54	30	0	22	47	1.52
80759--80795	14	2.6	14	95	0	65	27	0	21	51	1.48
82010--82068	24	2.5	24	82	0	73	28	16	18	35	1.93
84513--84596	19	4.7	19	81	14	115	45	19	22	13	1.84
84753--84789	14	2.6	14	91	0	65	45	24	0	29	1.53
86125--86191	21	3.2	21	68	4	55	19	20	35	23	1.95
86125--86247	42	2.9	41	79	7	104	23	17	35	22	1.95
88219--88435	20	11.8	19	77	12	143	44	22	21	12	1.85
88244--88341	32	3.0	33	86	4	135	38	26	23	11	1.88
88313--88440	19	6.7	19	91	3	195	46	21	19	12	1.83
88219--88440	40	6.1	38	81	10	207	43	22	21	12	1.86
88436--88479	18	2.4	19	92	3	72	9	15	27	47	1.76
89051--89127	40	1.9	40	86	0	109	22	16	22	38	1.93
89032--89124	20	4.7	20	82	0	96	23	18	24	33	1.97
89113--89205	20	4.6	20	78	4	96	18	24	18	38	1.92
89113--89208	41	2.3	41	98	0	183	18	23	17	39	1.92

Tables:   1

The End!