genome.fa.s3894.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003894.1 Hibiscus syriacus cultivar Beakdansim tig00008416_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60729

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71--112	21	2.0	21	85	0	57	33	21	0	45	1.52
697--741	21	2.1	21	87	0	63	15	24	28	31	1.96
3655--3809	31	5.0	31	85	4	208	36	21	20	21	1.95
3655--3807	61	2.5	62	90	5	240	36	21	20	21	1.95
4612--4652	20	2.0	20	85	0	55	17	26	29	26	1.97
16729--16769	21	1.9	22	85	5	57	34	7	4	53	1.50
35551--35613	11	5.9	11	73	14	60	57	1	1	39	1.18
35725--35763	14	2.8	14	88	0	60	48	28	0	23	1.51
35720--35765	21	2.2	21	84	0	56	45	28	0	26	1.54
37898--37982	11	7.5	11	76	7	89	32	18	23	24	1.97
37907--37994	12	7.6	11	73	7	68	36	17	21	25	1.94
37898--38005	46	2.3	46	88	0	135	33	17	23	25	1.96
37898--37994	23	4.2	23	94	0	158	34	17	22	25	1.96
38984--39018	15	2.4	15	90	4	54	40	0	0	60	0.97
48682--48894	20	10.4	20	71	17	109	34	19	18	27	1.96
48640--48815	21	8.5	21	70	9	85	27	21	17	32	1.96
48667--48876	41	5.1	41	72	10	144	32	20	18	28	1.96
48805--48894	41	2.2	40	88	2	126	38	20	21	20	1.93
49491--49546	14	3.6	14	74	21	58	8	25	23	42	1.82
49489--49595	33	3.0	33	84	10	133	10	25	20	43	1.83
49505--49595	20	4.9	20	74	17	81	10	24	19	45	1.83
51274--51578	94	3.3	94	91	2	467	21	12	18	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53440--53475	14	2.6	14	95	0	63	33	0	22	44	1.53
53582--53642	19	3.5	19	68	21	60	45	19	21	13	1.84
53590--53661	33	2.2	33	89	0	108	48	20	20	9	1.78
53667--53817	19	8.7	19	61	21	62	13	23	19	44	1.85
53671--53797	33	3.8	33	92	0	209	12	22	18	46	1.82
53791--53863	20	3.6	20	67	17	60	24	19	24	31	1.98
56071--56095	12	2.1	12	100	0	50	0	28	0	72	0.86
56270--56323	24	2.2	24	86	0	72	40	18	16	24	1.90
57062--57114	20	2.7	20	90	0	88	24	20	26	28	1.99
57096--57239	21	7.0	21	71	16	88	21	19	21	37	1.94
57042--57239	62	3.2	62	87	5	269	21	19	21	36	1.95
57143--57256	21	5.6	20	76	7	86	21	21	18	38	1.93
57244--57298	21	2.7	20	77	8	65	32	18	25	23	1.97

Tables:   1

The End!