Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003895.1 Hibiscus syriacus cultivar Beakdansim tig00008417_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71404

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3913--3985
28
2.6
28
78
10
76
23
1
21
53
1.54
4069--4126
27
2.2
26
84
9
73
27
1
17
53
1.53
4067--4158
29
3.3
27
73
11
78
28
2
14
55
1.51
3854--4148
154
1.9
157
88
3
445
31
5
15
47
1.70
10304--10338
15
2.2
16
90
5
54
68
2
0
28
1.04
16781--16809
3
9.7
3
100
0
58
31
0
0
68
0.89
20212--20242
2
15.5
2
100
0
62
48
0
0
51
1.00
30453--30519
29
2.4
28
73
14
73
38
13
8
38
1.76
33425--33481
2
28.5
2
100
0
114
50
0
49
0
1.00
33647--33887
39
5.9
39
75
15
204
52
9
21
17
1.72
33787--33816
3
10.0
3
100
0
60
66
0
33
0
0.92
33752--33849
51
1.9
51
91
0
160
54
8
22
15
1.67
33802--33888
36
2.4
37
88
3
131
51
10
22
14
1.73
40978--41080
52
2.0
52
98
0
197
21
23
13
41
1.88
44219--44257
18
2.2
17
86
4
51
43
2
0
53
1.14
44295--44332
16
2.2
17
86
9
51
34
2
0
63
1.09
46796--46820
12
2.1
12
100
0
50
16
0
0
84
0.63
50845--50930
35
2.5
35
84
0
100
40
20
1
37
1.61
50899--50941
21
2.0
21
100
0
86
46
13
0
39
1.44
51063--51099
15
2.4
16
86
13
51
32
2
5
59
1.34
51563--51810
130
1.9
130
92
0
415
36
13
14
35
1.85
57088--57145
28
2.0
30
86
6
84
36
12
25
25
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60314--60351
20
1.9
20
94
0
67
26
28
10
34
1.90
61929--61974
19
2.6
18
86
10
67
17
2
6
73
1.14
63275--63327
25
2.1
26
96
3
99
49
18
20
11
1.78
64730--64778
24
2.0
24
84
0
62
30
40
8
20
1.81
66065--66124
22
2.7
22
86
0
75
38
18
20
23
1.93
70131--70169
20
2.0
20
84
0
51
23
7
23
46
1.78
70291--70330
20
2.0
20
90
0
62
20
25
35
20
1.96

Tables:   1

The End!