Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003896.1 Hibiscus syriacus cultivar Beakdansim tig00008418_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91756

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1887--1933
3
15.7
3
100
0
94
31
0
0
68
0.90
3582--3677
23
4.2
23
77
1
95
18
23
22
34
1.96
20749--20835
23
3.9
22
77
5
75
19
17
27
35
1.94
26289--26351
31
2.0
31
96
0
117
41
12
11
34
1.79
27701--27777
33
2.4
32
80
8
84
27
32
6
33
1.82
27963--28044
33
2.5
34
90
5
125
23
26
13
36
1.92
27546--28071
261
2.0
261
88
1
786
32
20
8
38
1.84
28616--28702
33
2.6
33
80
5
95
78
1
13
6
1.01
30358--30568
79
2.7
79
85
1
280
34
18
19
28
1.95
31001--31122
3
40.7
3
100
0
244
32
0
0
67
0.91
36065--36370
85
3.6
85
89
5
451
30
21
16
31
1.96
36065--36368
168
1.8
167
90
2
493
30
21
17
31
1.96
36425--36459
2
17.5
2
100
0
70
48
0
0
51
1.00
44564--44658
39
2.4
39
74
11
95
46
3
20
30
1.66
51680--51762
17
4.9
17
76
8
71
46
0
1
51
1.08
51682--51751
17
4.1
17
79
0
77
48
0
1
50
1.09
55185--55270
7
11.6
7
68
20
50
17
4
1
76
1.01
55185--55272
19
4.2
20
74
18
74
18
4
1
76
1.02
55241--55278
18
2.1
18
85
9
51
23
5
0
71
1.07
55198--55271
24
3.1
23
72
16
62
17
4
1
77
1.00
55248--55368
60
2.1
57
81
7
138
30
4
1
63
1.23
55339--55365
2
13.5
2
100
0
54
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55406--55451
16
2.9
15
84
12
56
6
10
0
82
0.83
60327--60973
182
3.6
182
87
0
893
43
12
16
27
1.84
61061--61168
56
1.9
56
98
0
207
40
12
12
33
1.82
61999--62479
198
2.4
198
79
7
487
38
14
15
30
1.88
62577--62621
23
2.0
23
90
0
72
37
20
11
31
1.87
65828--65862
18
1.9
18
88
0
52
17
11
8
62
1.52
66864--66895
14
2.3
14
100
0
64
37
15
0
46
1.46
67588--67664
31
2.5
31
82
2
100
28
31
25
14
1.95
67541--67664
63
2.0
63
82
6
153
26
29
27
16
1.97
68553--68626
21
3.5
21
94
1
121
9
24
45
20
1.80
68629--68692
10
6.7
10
77
7
62
28
26
25
20
1.99
74931--75007
31
2.5
31
82
2
100
28
31
25
14
1.95
74884--75007
63
2.0
63
82
6
153
26
29
27
16
1.97
75897--75953
5
10.8
5
77
17
53
7
22
50
19
1.71
75902--75954
17
2.8
18
88
11
72
9
22
49
18
1.76
75890--75953
21
3.0
22
95
4
121
9
23
48
18
1.77
75950--76028
19
4.2
18
75
16
79
27
30
27
13
1.95
75956--76049
9
9.7
10
78
11
81
29
28
25
15
1.96
75992--76048
29
1.9
30
92
3
98
31
24
28
15
1.96
81704--81836
62
2.1
62
85
8
173
36
16
12
33
1.87
85140--85265
47
2.8
45
85
5
164
39
7
23
29
1.83

Tables:   1

The End!