Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003898.1 Hibiscus syriacus cultivar Beakdansim tig00008426_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77694

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
573--630
21
2.8
21
83
0
80
17
27
31
24
1.97
12226--12278
26
2.0
27
88
3
81
0
5
15
79
0.91
12235--12279
23
1.9
24
86
13
67
0
4
15
80
0.87
18258--18283
2
13.0
2
100
0
52
50
0
0
50
1.00
40421--40451
16
1.9
16
93
0
53
19
9
16
54
1.68
47752--47777
2
13.0
2
100
0
52
50
0
0
50
1.00
57738--58169
6
72.7
6
97
1
809
33
0
16
49
1.51
62856--62892
19
1.9
19
94
0
65
32
24
16
27
1.96
62938--62986
21
2.3
21
92
0
80
20
24
16
38
1.92
62948--62994
21
2.2
21
96
0
85
21
21
14
42
1.88
62948--63004
21
2.7
21
88
0
60
26
21
15
36
1.93
63018--63073
20
2.7
21
78
10
62
35
26
17
19
1.94
63099--63189
21
4.4
21
79
5
105
21
20
27
29
1.98
63120--63197
40
2.0
40
100
0
156
23
20
25
30
1.98
63137--63202
21
3.2
21
72
6
73
22
22
22
31
1.98
63524--63632
19
5.4
19
79
13
101
30
28
6
34
1.82
63634--63689
20
2.8
20
83
8
69
25
23
21
30
1.99
67055--67106
21
2.5
21
87
3
70
38
17
25
19
1.93
67095--67208
20
5.7
20
82
6
104
31
24
18
25
1.97
67092--67208
61
1.9
61
84
3
155
33
23
17
24
1.97
67728--67794
19
3.5
19
85
2
89
47
25
16
10
1.78
67790--67955
20
9.1
19
74
16
136
12
21
22
43
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67795--67871
39
2.0
39
87
5
111
9
19
25
45
1.80
67843--67930
33
2.6
33
92
1
140
11
23
26
38
1.89
69956--70048
42
2.2
42
80
3
107
21
37
16
24
1.93
71438--71473
14
2.6
14
95
0
63
30
0
25
44
1.54
71656--71782
33
3.9
32
86
8
184
15
22
18
42
1.89
71649--71781
66
2.0
66
95
0
239
17
22
18
41
1.90
74266--74319
24
2.2
24
86
0
72
40
20
16
22
1.91
75259--75316
20
2.9
20
94
0
98
37
22
22
17
1.93
75353--75400
19
2.6
19
90
3
80
14
20
14
50
1.78
77393--77459
19
3.5
19
79
4
80
38
23
22
14
1.92
77374--77510
39
3.9
37
77
13
107
43
24
19
12
1.85
77448--77505
14
3.9
14
79
16
71
48
25
17
8
1.75
77432--77510
32
2.4
33
95
2
142
46
24
18
10
1.80
77517--77648
18
7.6
18
74
15
100
12
20
24
42
1.87
77538--77595
14
3.9
14
79
16
71
8
17
25
48
1.75
77522--77610
32
2.8
32
96
0
160
11
17
23
47
1.80
77596--77648
20
2.7
19
85
5
70
16
22
24
35
1.95

Tables:   1

The End!