genome.fa.s3899.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003899.1 Hibiscus syriacus cultivar Beakdansim tig00008427_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40306

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257--307	23	2.2	23	82	3	57	39	19	15	25	1.91
1313--1370	20	2.9	20	94	0	98	37	22	22	17	1.93
1375--1438	31	2.0	32	81	3	76	18	20	20	40	1.91
1387--1436	18	3.2	16	76	23	61	12	24	20	44	1.85
2900--2957	24	2.5	23	83	5	80	24	13	44	17	1.85
2900--2948	24	2.1	24	92	3	82	26	16	40	16	1.89
3335--3379	20	2.3	20	92	3	74	33	26	24	15	1.95
3380--3424	20	2.3	19	84	3	54	17	20	24	37	1.93
3903--3947	18	2.5	18	88	0	72	13	15	44	26	1.83
5253--5290	20	1.9	20	88	0	58	50	21	15	13	1.78
5795--5872	41	1.9	41	89	0	120	23	16	20	39	1.92
5755--5869	20	5.7	20	74	7	90	23	17	23	35	1.95
5858--5950	20	4.5	21	75	4	91	17	23	18	40	1.90
5858--5950	41	2.3	41	98	0	177	17	23	18	40	1.90
6709--6834	50	2.5	50	82	0	153	17	34	27	20	1.95
6957--6995	10	3.9	10	83	12	53	33	25	0	41	1.56
6955--6996	20	2.2	19	91	4	66	33	26	0	40	1.56
7122--7452	111	3.0	111	95	0	590	36	8	11	44	1.71
7546--7703	21	7.8	20	70	7	77	37	24	17	19	1.93
7671--7864	20	9.6	20	76	8	76	35	25	19	19	1.95
7671--7864	40	4.8	39	82	3	199	35	25	19	19	1.95
7671--7863	60	3.2	60	83	0	251	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8243--8313	33	2.2	33	92	0	115	11	22	18	47	1.80
8433--8487	14	3.6	14	73	21	56	41	23	25	9	1.83
8433--8503	33	2.2	33	94	0	124	43	25	22	8	1.81
8499--8596	19	5.7	19	70	22	81	10	24	22	42	1.84
8521--8608	14	5.7	14	70	26	63	9	25	23	42	1.83
8504--8616	33	3.5	33	92	2	194	9	23	21	45	1.81
10306--10683	93	4.1	93	98	1	726	22	12	18	46	1.83
10727--10855	19	7.3	19	75	17	125	45	28	17	8	1.77
10763--10855	33	2.8	32	91	4	150	46	27	18	7	1.76
10727--10855	52	2.5	52	74	14	140	45	28	17	8	1.77
10851--10985	19	7.6	19	75	16	128	11	19	23	45	1.82
10873--10929	14	3.7	14	77	20	60	10	21	22	45	1.82
10856--10948	33	2.8	33	95	0	168	10	20	21	47	1.80
12881--12916	14	2.6	14	95	0	63	33	0	22	44	1.53
13022--13104	19	4.6	19	80	17	113	43	18	24	14	1.87
13111--13405	33	8.5	35	84	13	239	14	21	17	46	1.84
13133--13405	19	15.4	19	81	15	345	13	21	17	46	1.83
13111--13374	109	2.5	105	91	6	451	14	22	17	46	1.84
13111--13374	52	5.0	52	93	5	447	14	22	17	46	1.84
24845--24909	32	2.0	32	84	0	85	44	20	3	32	1.67
27222--27269	16	2.8	18	75	12	55	14	18	4	62	1.47
29213--29331	39	2.9	42	69	13	122	34	19	17	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29183--29517	80	4.2	80	79	6	356	34	16	16	32	1.92
29182--29517	162	2.1	161	85	3	453	33	16	16	32	1.92
35390--35454	26	2.6	25	85	4	87	49	4	13	32	1.63
36364--36431	33	2.0	34	94	2	120	41	23	16	19	1.90

Tables:   1

The End!