genome.fa.s39.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000039.1 Hibiscus syriacus cultivar Beakdansim tig00000060_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120519

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15554--15599	22	2.1	21	84	11	58	60	2	4	32	1.28
15748--15873	49	2.5	49	78	6	128	17	32	29	20	1.96
15885--16006	51	2.5	49	88	9	178	25	24	22	27	2.00
20088--20128	18	2.5	15	79	20	55	21	21	26	29	1.99
20094--20130	18	2.1	18	100	0	74	21	21	29	27	1.99
21615--21827	110	1.9	111	92	0	356	46	7	7	38	1.62
21930--21957	10	2.8	10	100	0	56	60	0	0	39	0.97
35372--35655	31	9.2	31	96	0	496	34	15	10	39	1.82
35474--35527	16	3.4	16	67	23	51	31	16	12	38	1.87
35567--35651	16	5.4	16	64	25	56	31	16	12	38	1.87
36054--36230	64	2.8	63	85	3	212	25	18	22	33	1.97
36117--36279	64	2.5	64	85	3	213	27	22	18	31	1.97
39313--39565	31	8.2	31	96	0	461	34	15	11	38	1.83
40028--40170	64	2.2	64	80	4	164	29	21	16	32	1.96
42174--42233	16	3.8	15	79	14	59	31	1	8	58	1.38
42183--42233	11	4.7	11	78	4	50	33	1	5	58	1.33
50579--50683	2	51.0	2	80	12	92	42	5	1	49	1.37
50691--50744	27	2.0	27	100	0	108	25	7	0	66	1.17
51360--51411	14	3.6	15	79	7	63	26	5	5	61	1.42
51766--52030	138	1.9	138	84	0	350	30	13	13	42	1.83
54273--54324	2	26.5	2	96	3	97	51	0	0	48	1.00
55275--55379	33	3.2	33	82	9	142	40	36	8	14	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55370--55441	34	2.2	33	90	7	110	36	25	9	29	1.88
56713--56752	16	2.6	16	92	4	64	45	7	12	35	1.70
67583--67700	21	5.7	21	70	6	71	34	26	17	21	1.95
67688--67837	20	7.5	20	87	3	124	33	27	18	20	1.96
67706--67896	20	9.6	20	85	4	224	35	24	17	22	1.96
68586--68632	24	2.0	24	87	8	69	25	14	21	38	1.92
68807--68831	12	2.1	12	100	0	50	72	0	28	0	0.86
71112--71362	33	7.2	33	71	18	179	46	18	22	13	1.83
71126--71362	53	4.5	53	94	2	406	45	18	22	13	1.84
71202--71367	19	9.0	20	77	16	76	43	18	24	13	1.85
71126--71362	105	2.2	106	93	2	406	45	18	22	13	1.84
71345--71454	53	2.1	52	87	1	157	18	22	19	40	1.92
71377--71497	19	6.8	19	77	18	145	13	23	16	47	1.82
71416--71470	14	3.6	14	73	21	56	10	23	20	45	1.82
71397--71489	33	2.8	33	100	0	186	12	22	18	46	1.83
71588--71624	14	2.6	14	91	0	65	45	21	0	32	1.52
73546--73718	19	9.6	19	78	12	168	46	23	19	10	1.81
73640--73696	14	3.7	14	77	20	60	45	22	21	10	1.82
73621--73713	33	2.8	33	95	0	168	47	21	20	10	1.80
73730--73756	14	1.9	14	100	0	54	7	14	29	48	1.71
73714--73808	33	2.9	33	89	6	147	8	14	27	49	1.72
73714--73842	19	7.3	19	77	17	134	9	14	27	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73887--74541	93	7.1	93	98	0	1276	46	18	12	22	1.83
83029--83058	2	15.0	2	100	0	60	50	0	0	50	1.00
83081--83115	6	5.8	6	96	0	61	34	17	11	37	1.85
83276--83338	3	21.7	3	93	6	112	33	0	0	66	0.92
83826--83867	14	2.9	15	85	7	59	26	2	7	64	1.32
84232--84496	138	1.9	138	83	0	341	31	13	12	42	1.82
87697--87801	33	3.2	33	82	9	142	40	36	8	14	1.76
87792--87863	34	2.2	33	85	7	92	36	25	9	29	1.88
89140--89179	16	2.6	16	92	4	64	45	7	12	35	1.70
90180--90204	10	2.5	10	100	0	50	32	8	0	60	1.26
95086--95212	44	2.9	44	87	2	168	24	10	18	46	1.80
99258--99299	20	2.1	20	86	0	57	14	16	21	47	1.82
99820--99929	34	3.3	32	76	9	105	14	9	30	46	1.75
102239--102290	3	18.0	3	92	7	90	69	0	0	30	0.89
107662--107709	6	8.0	6	83	0	60	20	41	35	2	1.64
107662--107709	18	2.7	18	93	0	78	20	41	35	2	1.64
109257--109318	2	31.0	2	100	0	124	50	0	0	50	1.00
110599--110637	17	2.4	17	87	12	55	33	5	12	48	1.63
112820--112856	13	2.8	13	100	0	74	43	0	24	32	1.55

Tables:   1

The End!