genome.fa.s390.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000390.1 Hibiscus syriacus cultivar Beakdansim tig00000716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60439

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2240--2279	20	2.0	20	90	5	62	22	22	25	30	1.99
2302--2342	21	2.0	21	85	9	57	21	24	26	26	2.00
3051--3096	22	2.0	22	87	4	65	26	19	21	32	1.97
3057--3102	22	2.1	22	91	0	74	21	21	21	34	1.97
9436--9484	21	2.3	21	96	0	89	46	10	20	22	1.80
12090--12140	24	2.0	26	81	7	61	58	0	1	39	1.09
13047--13117	22	3.5	21	79	18	87	26	36	0	36	1.57
13046--13093	17	2.9	17	93	3	80	27	39	0	33	1.57
13063--13119	22	2.5	22	94	2	96	26	33	0	40	1.56
14360--14419	23	2.5	24	82	12	72	40	3	0	56	1.16
14380--14426	23	2.0	24	83	8	60	44	2	0	53	1.12
15038--15076	2	19.5	2	100	0	78	51	0	0	48	1.00
17428--17584	21	7.8	20	71	7	75	38	24	17	19	1.92
17571--17743	20	8.6	20	82	3	100	34	24	20	20	1.97
17598--17741	40	3.6	40	83	1	191	32	25	20	21	1.98
17551--17743	60	3.2	59	79	2	197	35	24	20	20	1.96
18236--18310	19	3.8	20	84	7	98	44	18	25	12	1.84
18329--18459	19	7.7	19	68	23	103	9	23	22	43	1.83
18351--18473	14	7.7	14	70	24	84	8	24	23	43	1.82
18334--18481	33	4.5	33	98	0	278	9	23	21	45	1.81
20161--20473	93	3.4	93	96	1	578	22	13	19	45	1.85
20571--20680	52	2.1	53	87	1	159	46	27	17	9	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20638--20664	14	1.9	14	100	0	54	48	29	14	7	1.71
20603--20680	19	4.4	19	81	15	103	47	28	16	7	1.74
20676--20813	19	7.8	19	72	15	134	10	21	21	46	1.81
20698--20754	14	3.7	14	75	20	51	10	22	22	43	1.84
20681--20811	33	3.8	33	84	9	181	9	21	22	46	1.80
22750--22785	14	2.6	14	95	0	63	33	0	22	44	1.53
22888--22985	19	5.4	19	82	13	134	45	17	21	15	1.84
22888--23003	52	2.2	53	95	3	209	43	18	23	14	1.86
22994--23232	19	13.7	19	78	18	279	14	20	17	46	1.84
22999--23232	52	4.5	52	84	12	311	14	20	17	47	1.83
22994--23246	71	3.6	69	87	9	270	14	21	18	46	1.84
23049--23265	71	3.1	70	90	3	307	13	20	18	47	1.83
23068--23246	33	5.2	33	84	10	243	13	20	18	47	1.82
25545--25569	12	2.1	12	100	0	50	0	28	0	72	0.86
25743--25789	24	2.0	24	87	8	69	38	21	14	25	1.92
26501--26745	20	12.2	20	88	1	267	19	18	24	36	1.94
26712--26810	21	4.7	21	76	3	74	22	18	22	37	1.94
26712--26811	42	2.4	44	77	9	102	22	18	23	37	1.94
31631--31689	22	2.6	23	75	22	61	35	5	0	59	1.20
33926--33963	20	1.9	20	84	10	51	44	0	23	31	1.54
37345--37383	20	2.0	20	84	0	51	23	7	23	46	1.78
37561--37621	20	2.9	21	87	9	88	21	24	32	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41440--41482	20	2.2	20	83	8	52	37	4	2	55	1.33
46937--46977	20	2.1	20	90	4	66	80	2	4	12	0.97
49823--49864	18	2.3	19	84	12	61	61	4	9	23	1.45
55624--55660	18	2.0	19	89	5	58	62	0	0	37	0.96
55800--55834	17	2.1	17	89	10	54	60	0	0	40	0.97
58369--58446	21	3.7	21	89	6	122	33	14	8	43	1.76

Tables:   1

The End!