genome.fa.s3900.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003900.1 Hibiscus syriacus cultivar Beakdansim tig00008429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133896

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4325--4445	44	2.8	44	76	13	135	23	26	20	29	1.99
6563--6602	15	2.6	16	92	4	64	40	0	17	42	1.49
9193--9356	81	2.0	81	98	0	319	36	13	23	26	1.92
13347--13399	19	2.8	19	94	0	88	49	11	7	32	1.67
14856--14913	3	19.7	3	81	16	59	34	0	0	65	0.93
14856--14912	17	3.7	15	80	15	71	35	0	0	64	0.93
14856--14913	25	2.3	25	80	13	66	34	0	0	65	0.93
19995--20175	90	2.0	90	94	0	317	33	23	15	27	1.95
26693--26751	26	2.4	25	86	8	84	54	18	15	11	1.71
27229--27289	23	2.7	23	100	0	122	29	26	14	29	1.95
27757--27829	2	36.5	2	100	0	146	50	0	0	49	1.00
28104--28380	150	1.8	150	81	3	342	18	25	20	35	1.95
29943--29981	15	2.6	15	83	0	51	66	2	7	23	1.30
32734--32817	39	2.2	39	86	0	114	25	15	27	32	1.95
41203--41241	18	2.0	18	85	14	51	35	5	0	58	1.20
41202--41247	20	2.2	22	78	21	55	34	4	2	58	1.30
45041--45099	29	2.0	29	100	0	118	23	13	13	49	1.78
49724--49782	29	2.0	29	100	0	118	23	13	13	49	1.78
53340--53380	16	2.6	16	96	0	73	24	51	14	9	1.72
54846--54945	31	3.2	31	86	0	146	57	16	6	21	1.60
55646--55678	17	1.9	17	88	11	50	66	6	6	21	1.35
57163--57276	53	2.1	53	93	1	192	46	7	13	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58169--58224	3	18.0	3	88	3	76	39	0	0	60	0.97
71101--71168	1	68.0	1	73	0	55	86	0	13	0	0.56
71104--71168	7	9.7	7	86	9	84	86	0	13	0	0.58
71101--71169	6	11.8	6	81	15	83	85	0	14	0	0.60
71101--71168	34	2.0	34	91	5	111	86	0	13	0	0.56
72134--72518	94	4.1	94	94	1	666	29	15	20	34	1.93
73357--73401	24	1.9	23	82	13	56	48	6	26	17	1.72
73308--73756	113	4.0	112	85	5	586	37	14	18	29	1.90
73308--73879	228	2.5	221	81	6	619	38	14	18	28	1.90
73676--73961	124	2.4	121	84	8	368	41	16	18	23	1.89
74109--74177	3	23.0	3	85	5	86	40	0	0	59	0.97
74109--74200	15	6.2	15	80	6	89	47	0	0	52	1.00
79815--79848	10	3.4	10	87	0	50	20	5	0	73	1.04
82181--82258	39	2.0	39	82	5	95	30	24	25	19	1.98
88908--89006	51	1.9	52	87	2	146	47	14	24	14	1.80
89771--90880	105	10.7	105	94	1	1850	34	25	18	22	1.96
92287--92330	17	2.5	17	81	7	52	40	2	0	56	1.11
96817--96846	13	2.2	14	94	5	53	20	26	13	40	1.89
101514--101563	14	3.6	14	71	15	50	34	2	16	48	1.57
107357--107434	39	2.0	38	85	9	104	43	5	1	50	1.32
107436--107464	14	2.1	14	100	0	58	48	6	0	44	1.29
107444--107515	21	3.5	21	70	22	62	48	6	1	43	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109079--109119	21	2.0	21	95	0	73	41	12	2	43	1.55
113053--113097	17	2.8	16	87	9	65	44	6	0	48	1.29
116974--117364	59	6.6	59	77	8	332	36	11	23	28	1.89
117034--117133	31	3.3	31	63	13	82	33	13	27	27	1.93
116973--117421	118	3.8	119	79	5	448	35	11	24	28	1.90
117497--117742	44	5.6	44	91	1	368	39	6	19	34	1.77
120491--120543	24	2.2	24	96	0	97	47	15	18	18	1.83
132937--133006	21	3.2	23	71	22	62	45	1	1	51	1.18

Tables:   1

The End!