genome.fa.s3903.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003903.1 Hibiscus syriacus cultivar Beakdansim tig00008439_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114970

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1411--1504	29	3.1	31	79	15	108	38	0	0	61	0.96
1440--1499	21	2.8	21	84	2	66	36	0	0	63	0.95
1396--1479	23	3.7	23	77	10	77	40	0	0	59	0.97
1397--1461	2	34.5	2	83	11	75	44	0	0	55	0.99
1405--1529	65	1.9	68	83	11	170	38	0	0	61	0.96
1977--2039	33	1.9	33	90	3	101	61	9	0	28	1.27
5735--5803	36	1.9	36	85	5	95	40	5	8	44	1.59
5789--5928	73	1.9	73	88	4	201	45	4	7	42	1.53
5793--5940	37	4.0	36	81	9	165	45	4	8	41	1.54
5789--5934	74	2.0	74	87	5	215	45	4	8	41	1.53
5796--5971	36	4.8	37	78	12	134	44	5	9	40	1.58
5936--5993	23	2.5	22	76	13	55	41	5	10	43	1.61
5962--6127	33	4.8	33	74	16	117	44	2	6	46	1.42
6004--6128	38	3.5	37	77	14	118	44	2	7	46	1.44
6038--6127	38	2.4	37	85	10	121	44	1	5	48	1.33
7680--7713	6	5.7	6	89	10	52	32	0	0	67	0.91
7688--7712	11	2.3	11	100	0	50	32	0	0	68	0.90
12806--13445	85	7.5	85	87	1	836	35	21	18	24	1.95
14088--14419	35	9.2	34	75	21	131	44	4	7	43	1.53
14169--14225	11	4.8	11	72	16	51	45	5	10	38	1.61
14123--14463	36	9.3	37	82	10	373	43	3	7	45	1.50
14118--14464	37	9.4	36	79	14	345	43	3	7	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14482--14513	5	6.6	5	92	7	57	18	0	0	81	0.70
14472--14513	19	2.2	19	87	8	59	21	0	2	76	0.90
14468--14512	14	3.3	14	90	3	65	22	0	2	75	0.91
15825--15858	16	2.1	16	88	0	50	29	0	0	70	0.87
15897--15966	15	4.7	14	70	18	52	17	7	1	74	1.11
15936--15961	11	2.4	11	100	0	52	26	0	0	73	0.84
17390--17427	12	3.2	12	86	13	53	28	7	0	63	1.23
20794--20854	26	2.4	26	77	2	61	31	6	13	49	1.67
22449--22486	18	2.1	18	100	0	76	26	15	5	52	1.64
29177--29348	57	3.0	57	91	0	263	38	32	15	13	1.86
34253--34292	21	1.9	21	89	0	62	42	7	0	50	1.30
34357--34528	57	3.0	57	87	0	236	37	29	17	15	1.91
39660--39697	18	2.1	18	90	0	58	31	36	10	21	1.87
44814--44918	37	2.8	37	83	0	138	40	15	13	30	1.85
45444--45495	21	2.5	21	76	14	54	34	3	0	61	1.14
45341--45502	66	2.5	63	77	7	155	33	4	3	58	1.35
45525--45569	2	22.5	2	100	0	90	48	0	0	51	1.00
45785--45821	2	18.5	2	100	0	74	48	0	0	51	1.00
50314--50370	11	4.7	11	78	18	60	85	3	10	0	0.70
50332--50397	20	3.3	20	74	20	66	81	6	10	1	0.92
50308--50383	25	3.0	26	84	7	93	82	5	11	0	0.81
51000--51076	22	3.5	22	90	0	127	37	25	14	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51271--51329	24	2.4	24	82	2	82	38	18	3	38	1.68
52059--53115	106	10.0	106	88	2	1470	34	24	18	22	1.96
52059--53115	423	2.5	422	89	2	1581	34	24	18	22	1.96
53814--53915	37	2.8	37	78	10	118	42	15	9	32	1.80
54450--54494	19	2.3	19	84	7	54	33	2	0	64	1.06
54384--54494	22	5.2	20	70	21	66	31	4	1	62	1.26
54449--54496	21	2.3	20	80	16	53	31	2	0	66	1.03
54449--54503	22	2.7	20	78	13	58	34	1	0	63	1.05
54527--54561	2	17.5	2	100	0	70	48	0	0	51	1.00
54770--54802	2	16.5	2	100	0	66	48	0	0	51	1.00
54803--54860	24	2.4	24	80	13	66	15	8	0	75	1.02
56547--56584	18	2.1	18	90	0	58	31	36	10	21	1.87
60007--60102	34	2.8	34	79	14	101	48	6	5	39	1.51
64646--64684	18	2.2	18	95	0	69	58	0	0	41	0.98
67739--67817	31	2.5	30	74	13	79	48	1	1	49	1.17
67803--67866	26	2.3	29	92	7	107	59	0	0	40	0.97
67803--67881	29	2.9	28	85	9	92	58	1	0	40	1.06
83311--83347	12	3.1	12	100	0	74	16	16	51	16	1.77
83752--83785	16	2.1	16	94	0	59	32	8	26	32	1.87
84536--84567	15	2.1	16	94	5	57	50	18	25	6	1.70
87824--87864	13	3.2	13	93	6	75	14	14	56	14	1.69
87824--87863	12	3.2	12	96	3	71	15	15	55	15	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91952--92346	54	7.4	54	86	4	489	26	18	18	35	1.95
93716--93769	28	2.0	28	85	3	74	35	0	11	53	1.36
94167--94214	19	2.4	21	82	6	64	43	0	6	50	1.27
95267--95307	15	2.7	15	92	0	73	39	19	41	0	1.52
95267--95320	15	3.6	15	87	0	63	38	16	42	1	1.59
95734--95758	6	4.2	6	100	0	50	16	0	52	32	1.44
101523--101580	26	2.2	26	100	0	116	29	18	20	31	1.97
101523--101597	26	2.9	26	90	2	89	29	22	18	29	1.98
105936--106117	89	2.0	89	98	0	355	31	10	27	30	1.91
111747--111817	33	2.1	36	92	7	121	36	14	7	42	1.72
111828--111874	23	2.0	24	83	4	60	42	2	10	44	1.51
111809--111876	25	2.7	24	71	15	57	45	2	8	42	1.50
111895--111948	28	1.9	28	84	0	72	42	5	9	42	1.60
112262--112299	2	19.5	2	94	5	69	50	0	0	50	1.00
112265--112298	17	2.0	17	100	0	68	52	0	0	47	1.00
112466--112540	25	2.9	27	86	8	118	30	30	0	38	1.58
113387--113420	17	2.0	17	94	0	59	35	23	20	20	1.96

Tables:   1

The End!