genome.fa.s3904.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003904.1 Hibiscus syriacus cultivar Beakdansim tig00008440_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85949

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184--225	21	2.0	21	90	0	66	26	19	23	30	1.98
678--715	19	2.1	19	85	9	53	31	21	0	47	1.51
1043--1105	31	2.0	31	93	0	108	34	17	19	28	1.94
4566--4609	2	22.0	2	100	0	88	50	0	0	50	1.00
4740--4787	2	24.5	2	95	4	89	47	0	0	52	1.00
5488--5537	21	2.4	21	93	0	82	22	20	18	40	1.92
8262--8294	14	2.4	14	94	0	57	39	0	6	54	1.25
9511--9572	30	2.1	30	96	0	115	33	9	3	53	1.50
11496--11524	15	1.9	15	100	0	58	20	10	20	48	1.79
12554--12596	6	6.8	6	89	7	59	53	2	0	44	1.13
14543--14590	19	2.3	21	86	13	64	64	0	0	35	0.94
15414--15446	16	2.1	16	100	0	66	57	18	12	12	1.64
15515--15563	16	3.1	16	93	0	80	53	26	14	6	1.64
15531--15569	10	4.3	10	75	24	50	56	23	12	7	1.62
16626--16652	14	1.9	14	100	0	54	51	29	11	7	1.64
18031--18096	14	4.8	14	72	10	55	33	0	19	46	1.50
18026--18096	27	2.6	27	76	10	81	32	0	21	46	1.51
18026--18103	34	2.3	34	81	2	93	32	0	21	46	1.52
18050--18087	20	1.9	20	84	10	51	26	0	28	44	1.54
18078--18114	14	2.6	14	95	0	65	37	0	18	43	1.51
20025--20127	53	1.9	53	94	3	181	27	16	17	38	1.91
26278--26370	3	30.7	3	93	2	159	63	1	0	35	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26688--27357	113	5.9	112	94	2	1094	28	19	14	38	1.91
27884--28592	82	8.6	82	96	0	1249	36	22	12	28	1.90
27884--28592	245	2.9	246	96	0	1267	36	22	12	28	1.90
27884--28592	327	2.2	330	95	0	1280	36	22	12	28	1.90
40375--40444	25	2.9	24	77	10	63	65	1	4	28	1.20
42567--42598	11	2.8	11	95	4	55	43	0	0	56	0.99
42594--42682	3	29.7	3	95	0	160	64	1	1	33	1.09
44590--44648	25	2.3	25	82	2	73	44	3	6	45	1.47
45389--45517	60	2.2	59	80	6	136	34	22	4	38	1.75
45844--45883	2	20.0	2	100	0	80	50	0	0	50	1.00
46987--47049	21	3.2	21	66	25	64	39	17	11	31	1.85
46974--47053	38	2.1	38	100	0	160	36	20	12	31	1.89
46982--47062	38	2.1	38	90	4	128	34	22	13	29	1.92
47140--47169	2	15.0	2	100	0	60	50	0	0	50	1.00
47376--47430	24	2.3	24	80	0	65	12	16	23	47	1.81
48523--48565	10	4.1	10	82	11	59	6	9	23	60	1.51
48517--48561	22	2.0	22	95	0	81	4	11	26	57	1.52
48512--48542	16	1.9	16	100	0	62	6	9	25	58	1.54
48941--48965	10	2.5	10	100	0	50	60	12	16	12	1.60
50418--50485	31	2.2	30	84	7	84	1	17	1	79	0.88
50443--50495	10	5.1	10	82	8	61	0	18	0	81	0.70
50457--50495	12	3.2	12	92	0	69	0	17	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50445--50511	10	6.3	10	81	10	53	0	25	0	74	0.82
50432--50511	12	7.1	12	81	12	64	0	26	0	73	0.83
50457--50507	24	2.0	24	88	7	75	0	23	0	76	0.79
50418--50514	32	3.1	30	78	11	97	1	21	1	76	0.91
50933--50971	20	2.0	20	89	0	60	25	20	23	30	1.98
50601--51114	257	2.0	257	88	3	759	32	18	17	32	1.94
51669--51773	42	2.5	40	80	4	120	31	20	19	28	1.97
51931--52025	42	2.3	41	81	1	118	35	22	17	24	1.95
51663--52403	258	2.9	257	88	3	1032	34	16	15	33	1.90
52189--52284	42	2.3	41	82	3	120	34	23	18	22	1.96
54050--54086	2	18.5	2	100	0	74	48	0	0	51	1.00
55097--55134	13	3.0	13	80	3	51	52	10	15	21	1.72
56193--56236	19	2.3	19	84	7	54	43	4	2	50	1.35
57006--57054	19	2.6	19	93	0	80	48	12	0	38	1.41
57623--57668	22	2.1	22	84	8	58	47	6	4	41	1.49
62987--63019	5	6.6	5	100	0	66	60	0	0	39	0.97
65128--65169	17	2.7	15	79	20	50	57	0	2	40	1.12
65361--65403	22	2.0	22	100	0	86	55	2	0	41	1.12
65357--65411	12	4.5	13	74	21	57	52	1	0	45	1.11
65417--65481	2	32.5	2	100	0	130	50	0	0	49	1.00
69924--69965	20	2.0	21	86	4	59	69	14	0	16	1.20
71014--71125	37	3.0	37	94	0	197	40	12	13	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71482--71534	3	18.3	3	77	14	58	32	1	0	66	1.03
71482--71534	26	2.2	25	83	10	65	32	1	0	66	1.03
71472--71534	29	2.3	28	84	10	85	28	4	0	66	1.12
71679--71715	2	18.5	2	100	0	74	48	0	0	51	1.00
72018--72064	22	2.1	23	84	4	60	19	10	0	70	1.16
75903--75951	19	2.6	19	84	9	57	24	28	20	26	1.99
81694--81773	24	3.5	24	69	20	73	22	25	22	30	1.99
83888--83917	2	15.5	2	93	6	53	50	0	0	50	1.00
83989--84029	16	2.6	16	96	0	73	39	0	19	41	1.52
84486--84591	45	2.3	45	82	4	115	29	19	20	30	1.97

Tables:   1

The End!