genome.fa.s3905.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003905.1 Hibiscus syriacus cultivar Beakdansim tig00008441_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51410

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2552--2637	44	2.0	44	83	4	111	43	16	16	24	1.87
4680--4738	31	1.9	31	89	0	91	40	5	10	44	1.60
4763--4805	22	2.0	22	95	0	77	51	11	0	37	1.39
4765--4813	22	2.2	22	85	3	62	55	12	0	32	1.37
4768--5420	80	7.8	78	75	16	509	52	11	0	35	1.41
4851--4966	18	6.7	18	62	28	54	55	9	0	35	1.33
4865--4944	32	2.5	32	95	0	142	56	7	0	36	1.28
4887--4940	14	3.6	14	72	18	54	57	5	0	37	1.22
4753--5720	166	6.0	165	76	15	900	52	10	0	36	1.41
4817--5720	134	6.8	134	73	15	461	52	11	0	36	1.41
4931--4979	22	2.2	22	85	3	62	55	12	0	32	1.37
4985--5052	22	2.8	24	76	14	77	52	13	1	32	1.49
5116--5174	21	2.8	21	78	2	73	50	10	1	37	1.46
5154--5720	32	19.7	32	68	26	287	52	11	0	36	1.40
5184--5344	54	3.0	54	98	0	304	52	11	0	36	1.37
5218--5266	22	2.2	22	85	3	62	55	12	0	32	1.37
5272--5320	22	2.2	22	85	3	62	55	12	0	32	1.37
5275--5401	40	3.2	40	65	18	102	53	11	0	34	1.38
5326--5400	22	3.2	23	75	11	80	56	12	0	32	1.36
5355--5640	54	5.3	54	80	9	350	52	9	0	37	1.40
5404--5445	22	1.9	22	90	0	66	45	9	2	42	1.49
5458--5518	22	2.8	22	92	0	104	52	9	0	37	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5524--5577	14	3.6	14	72	18	54	57	5	0	37	1.22
5372--5720	162	2.1	165	88	5	530	52	10	0	36	1.41
5719--5868	15	10.0	15	92	0	237	48	0	0	50	1.05
6123--6197	2	40.0	2	73	12	52	53	0	1	45	1.08
6826--6881	24	2.3	24	100	0	112	37	16	17	28	1.91
10109--10201	25	3.6	27	87	8	140	43	15	11	30	1.82
13903--13988	27	3.2	28	83	8	72	44	15	13	26	1.84
13919--13999	27	3.1	26	89	7	119	41	13	14	29	1.84
16043--16098	22	2.6	21	81	10	60	39	3	10	46	1.56
17399--17455	30	1.9	29	89	3	87	47	5	0	47	1.24
29829--29867	8	4.9	8	87	0	51	35	0	15	48	1.45
30533--30559	14	1.9	14	100	0	54	59	7	7	25	1.51
32425--32532	54	2.0	53	96	1	198	52	9	3	34	1.51
34313--34395	42	2.0	42	87	0	121	19	13	16	50	1.77
34316--34404	42	2.1	42	83	4	108	20	12	17	49	1.79
34619--34670	21	2.6	20	82	11	54	44	0	1	53	1.11
34668--34720	23	2.3	23	80	6	63	49	1	1	47	1.23
34814--34858	23	2.0	23	86	0	63	53	2	2	42	1.25
34961--35016	27	2.0	28	83	16	73	50	0	0	50	1.00
34975--35033	22	2.7	22	81	7	66	50	0	1	47	1.11
35203--35284	15	5.5	15	83	11	82	35	14	6	43	1.70
35203--35284	30	2.8	30	87	5	105	35	14	6	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40331--40408	2	39.0	2	100	0	156	50	0	0	50	1.00
40625--40683	31	1.9	30	83	16	77	32	3	6	57	1.41
41129--41167	20	2.0	20	100	0	78	20	7	0	71	1.10
41298--41363	34	1.9	33	85	11	89	56	7	6	30	1.52
44776--44808	2	16.5	2	100	0	66	48	0	0	51	1.00
47187--47236	2	25.0	2	100	0	100	50	0	0	50	1.00
51283--51404	12	10.2	12	87	0	145	27	10	22	39	1.87
51283--51404	20	6.1	20	90	0	163	27	10	22	39	1.87
51285--51395	8	13.9	8	86	0	105	27	10	23	38	1.88

Tables:   1

The End!