genome.fa.s3907.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003907.1 Hibiscus syriacus cultivar Beakdansim tig00008450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73337

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3711--3757	21	2.2	21	100	0	94	23	23	14	38	1.92
33777--33815	20	2.0	20	84	0	51	35	23	10	30	1.88
44049--44101	21	2.5	21	81	6	72	20	26	18	33	1.96
44091--44139	21	2.4	20	79	3	53	40	16	20	22	1.91
44131--44225	20	4.7	20	82	7	102	34	25	18	21	1.96
44128--44205	41	1.9	41	91	0	129	38	24	17	19	1.93
44704--44762	20	3.0	20	87	0	73	15	18	22	44	1.87
44899--44953	25	2.2	24	78	15	58	20	9	18	52	1.71
46081--46128	18	2.7	18	93	0	87	27	45	12	14	1.81
46668--46713	20	2.3	20	88	0	65	36	26	21	15	1.93
46714--46849	20	7.3	19	78	10	93	13	22	22	41	1.88
46788--46849	20	3.1	20	95	0	106	16	25	25	32	1.96
47196--47251	21	2.7	20	72	8	58	25	39	14	21	1.91
47196--47284	42	2.1	42	87	4	126	22	41	14	21	1.89
47196--47314	42	2.8	41	81	5	121	22	39	16	21	1.92
48682--48720	14	2.8	14	84	0	51	35	0	17	46	1.49
48837--48904	19	3.8	19	85	14	101	47	17	22	13	1.82
48932--48998	20	3.3	20	89	0	89	19	20	20	38	1.93
49550--49637	20	4.4	20	94	0	140	26	19	29	25	1.98
49689--49750	21	3.0	20	73	17	63	37	17	22	22	1.94
51689--51813	63	2.0	63	90	0	196	44	18	21	16	1.87
54399--54522	61	2.0	61	93	0	212	27	14	16	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61265--62458	299	4.0	298	96	2	2176	30	18	11	39	1.87
61265--62450	593	2.0	588	96	2	2180	29	18	11	39	1.87
68771--68890	42	2.9	42	94	0	213	17	17	20	45	1.86
69083--69218	29	4.7	27	72	22	98	45	0	0	53	1.05
69076--69218	57	2.4	57	78	13	146	44	0	0	54	1.05
69143--69217	28	2.9	26	80	18	77	44	0	0	56	0.99
69149--69226	19	4.1	19	74	14	79	46	0	0	53	1.00
69148--69226	11	8.0	11	71	23	61	45	0	0	54	0.99
69221--69265	23	2.0	23	86	0	63	53	2	2	42	1.25
69530--69557	14	2.0	14	100	0	56	42	14	14	28	1.84
69588--69651	15	4.3	15	80	11	78	37	15	6	40	1.73
69573--69658	30	2.9	30	86	5	104	33	16	5	44	1.71
69573--69659	15	5.9	15	78	8	70	33	16	5	44	1.71

Tables:   1

The End!