genome.fa.s3908.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003908.1 Hibiscus syriacus cultivar Beakdansim tig00008454_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  240793

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2367--2494	35	3.6	35	81	8	134	32	17	12	37	1.88
2680--2742	21	3.0	21	93	2	101	20	20	15	42	1.89
2616--2803	85	2.2	84	82	8	211	24	23	14	37	1.92
2700--2881	64	2.8	66	82	6	246	25	21	13	39	1.91
2984--3224	82	3.0	80	84	6	281	27	32	15	24	1.96
4527--4553	2	13.5	2	100	0	54	48	0	0	51	1.00
7755--7798	20	2.4	18	82	14	54	38	0	0	61	0.96
8460--8513	26	2.1	26	85	0	72	35	5	3	55	1.41
11049--11187	69	2.0	69	91	2	226	23	20	19	35	1.95
15390--15437	13	3.7	13	74	0	51	41	16	8	33	1.78
15391--15444	26	2.1	26	85	0	72	40	20	9	29	1.83
19548--19572	13	1.9	13	100	0	50	44	8	0	48	1.32
22096--22156	23	2.7	23	87	2	88	57	13	4	24	1.56
23643--23674	17	1.9	16	93	6	55	65	0	0	34	0.93
25415--25452	19	2.0	19	85	10	51	36	13	18	31	1.89
25829--25862	17	2.1	16	88	5	50	23	0	26	50	1.50
25878--25915	19	2.1	19	90	5	60	50	7	10	31	1.66
29149--29342	49	3.9	48	77	13	176	48	13	11	26	1.77
29171--29329	49	3.2	49	82	6	187	49	14	11	25	1.76
31260--31420	83	2.0	78	89	8	243	24	9	16	49	1.76
33335--33366	3	10.7	3	100	0	64	34	0	0	65	0.93
40504--40556	29	1.9	28	85	11	74	58	9	0	32	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42427--42455	2	14.5	2	100	0	58	51	0	0	48	1.00
47864--47901	17	2.2	17	95	0	67	39	15	10	34	1.82
54244--54280	14	2.6	15	83	12	51	13	29	10	45	1.77
54244--54311	28	2.4	29	83	9	79	13	26	14	45	1.82
55216--55242	2	13.5	2	100	0	54	51	0	0	48	1.00
56669--56781	36	3.1	34	71	8	91	38	16	9	34	1.82
56781--56860	37	2.2	36	86	2	106	32	20	13	33	1.91
56844--56918	29	2.6	29	95	0	141	32	20	10	37	1.87
56874--57019	65	2.2	65	87	0	220	30	23	9	36	1.87
57039--57316	66	4.2	67	87	3	352	26	22	12	38	1.90
57097--57213	30	3.7	31	72	22	100	29	22	11	35	1.90
57133--57249	36	3.4	35	72	21	106	27	22	12	37	1.90
57978--58018	19	2.1	20	90	4	66	70	0	26	2	0.99
60843--60900	30	1.9	30	100	0	116	50	22	3	24	1.65
62446--62472	2	13.5	2	100	0	54	51	0	0	48	1.00
65428--65484	21	2.7	21	76	10	62	54	1	43	0	1.10
65883--65944	31	2.0	31	96	0	115	46	14	6	32	1.70
68184--68440	45	5.8	45	84	5	290	23	25	12	38	1.90
68198--68440	89	2.7	90	83	4	303	23	24	12	39	1.90
69334--69382	24	2.0	25	88	4	73	55	16	16	12	1.70
69651--69916	128	2.1	128	87	1	381	40	15	11	32	1.83
77692--77724	14	2.4	14	100	0	66	45	0	12	42	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79414--79834	41	10.2	41	68	7	172	35	12	18	33	1.89
79400--79604	82	2.5	82	91	0	320	34	13	18	34	1.89
79558--79651	47	2.0	47	93	0	161	36	11	21	30	1.89
79480--79733	129	2.0	129	90	1	402	37	11	18	33	1.86
79609--79810	77	2.5	82	80	7	200	36	10	18	34	1.85
79758--79845	41	2.1	41	85	4	115	34	14	19	31	1.92
94279--94332	24	2.4	22	82	11	72	42	12	16	27	1.85
94285--94334	24	2.1	24	92	0	82	44	10	20	26	1.82
103694--103777	24	3.4	24	67	15	71	39	0	27	33	1.57
103695--103803	51	2.1	51	93	0	182	36	0	26	36	1.57
103719--103814	27	3.7	26	70	14	74	33	1	25	40	1.62
104477--105373	56	16.1	56	86	2	1164	35	11	17	35	1.86
104475--105353	111	7.9	110	87	4	1182	35	11	18	35	1.86
104477--105353	167	5.2	166	88	3	1237	35	11	18	35	1.86
105457--105765	82	3.8	81	87	2	413	40	10	21	27	1.86
105457--105760	163	1.9	163	88	1	457	40	10	21	27	1.86
105766--105858	46	2.0	46	89	0	141	46	10	15	27	1.79
112616--112663	21	2.3	21	85	0	60	41	12	18	27	1.86
116204--116235	12	2.6	13	85	14	50	40	6	0	53	1.26
135309--135361	26	2.0	26	100	0	106	37	15	11	35	1.83
153386--153441	20	2.8	20	86	0	67	39	16	12	32	1.85
153531--153576	20	2.4	19	79	17	51	23	26	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160992--161124	14	9.6	14	71	8	85	41	31	3	24	1.70
160976--161080	7	15.1	7	73	5	70	40	34	3	20	1.71
161048--161124	21	3.7	21	75	1	66	41	31	1	25	1.64
162164--162204	21	2.0	21	85	0	55	53	24	0	21	1.46
162784--162814	14	2.2	14	100	0	62	12	38	29	19	1.89
163019--163049	15	2.0	16	93	6	55	45	12	6	35	1.68
163504--163561	24	2.4	24	100	0	116	31	5	17	46	1.70
170837--170892	29	1.9	29	92	0	94	1	53	1	42	1.21
175375--175404	15	2.0	15	93	0	51	56	0	3	40	1.16
177603--178002	42	9.4	43	81	5	393	34	20	19	25	1.96
177603--178033	85	5.1	84	81	5	427	34	19	19	26	1.96
177645--178033	127	3.1	127	83	3	469	33	19	20	26	1.96
181522--181879	41	8.8	41	87	0	468	34	17	19	28	1.94
188681--188726	21	2.2	21	92	0	74	26	0	28	45	1.54
189727--189758	15	2.1	15	94	0	55	62	0	3	34	1.11
194370--194435	28	2.4	28	82	5	80	36	21	16	25	1.94
194491--194524	15	2.3	15	94	0	59	52	11	23	11	1.70
199558--199608	25	2.0	27	84	7	70	50	3	3	41	1.39
199585--199629	18	2.6	16	80	16	54	57	0	2	40	1.11
202080--202124	2	22.5	2	100	0	90	51	0	0	48	1.00
203307--203356	2	25.0	2	100	0	100	50	0	0	50	1.00
206253--206280	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209546--209591	4	11.0	4	93	6	58	71	0	0	28	0.86
210405--210450	20	2.3	21	85	7	60	32	17	10	39	1.84
218682--218786	51	2.1	51	100	0	210	37	15	15	32	1.88
233336--233379	21	2.1	21	83	8	54	36	2	11	50	1.51
233590--233618	15	1.9	15	100	0	58	55	3	0	41	1.17

Tables:   1

The End!