Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000391.1 Hibiscus syriacus cultivar Beakdansim tig00000717_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53396
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Found at i:2539 original size:18 final size:17
Alignment explanation
Indices: 2496--2539 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 17
2486 TTAAAACATT
2496 TTGGATGTTTTTGGATTA
1 TTGGATG-TTTTGGATTA
2514 TT--ATGTTTTGGATTA
1 TTGGATGTTTTGGATTA
2529 TATGGATGTTT
1 T-TGGATGTTT
2540 GAACTTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 11 0.48
16 4 0.17
18 8 0.35
ACGTcount: A:0.18, C:0.00, G:0.25, T:0.57
Consensus pattern (17 bp):
TTGGATGTTTTGGATTA
Found at i:4125 original size:11 final size:11
Alignment explanation
Indices: 4109--4135 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
4099 ATACATTGAT
4109 GAGTTGTGGTG
1 GAGTTGTGGTG
4120 GAGTTGTGGTG
1 GAGTTGTGGTG
4131 GAGTT
1 GAGTT
4136 ATTCGAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.11, C:0.00, G:0.52, T:0.37
Consensus pattern (11 bp):
GAGTTGTGGTG
Found at i:5390 original size:16 final size:16
Alignment explanation
Indices: 5369--5401 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
5359 GCGATTTCCT
5369 GGAGCAAGTACATAAG
1 GGAGCAAGTACATAAG
5385 GGAGCAAGTACATAAG
1 GGAGCAAGTACATAAG
5401 G
1 G
5402 CATCTCGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.33, T:0.12
Consensus pattern (16 bp):
GGAGCAAGTACATAAG
Found at i:12480 original size:12 final size:13
Alignment explanation
Indices: 12457--12485 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
12447 TCGAAGAAGA
12457 AAAAAAGAAAAAG
1 AAAAAAGAAAAAG
12470 AAAAAAG-AAAAG
1 AAAAAAGAAAAAG
12482 AAAA
1 AAAA
12486 GAAAAGACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:12485 original size:17 final size:17
Alignment explanation
Indices: 12450--12490 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
12440 TTCTAAGTCG
*
12450 AAGAAGAAAAAAAGAAA
1 AAGAAAAAAAAAAGAAA
12467 AAGAAAAAAGAAAAG-AA
1 AAGAAAAAA-AAAAGAAA
12484 AAGAAAA
1 AAGAAAA
12491 GACCAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAAAAAGAAA
Found at i:12498 original size:18 final size:17
Alignment explanation
Indices: 12450--12508 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
12440 TTCTAAGTCG
*
12450 AAGAAGAAA-AAAAGAAA
1 AAGAAAAAACAAAAG-AA
*
12467 AAGAAAAAAGAAAAGAA
1 AAGAAAAAACAAAAGAA
*
12484 AAGAAAAGACCAAAA-AA
1 AAGAAAA-AACAAAAGAA
12501 AGAGAAAA
1 A-AGAAAA
12509 TGTTTAGGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 20 0.56
18 16 0.44
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (17 bp):
AAGAAAAAACAAAAGAA
Found at i:12573 original size:21 final size:21
Alignment explanation
Indices: 12547--12587 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
12537 CCTAAATTGA
12547 AAAAAAAAAGAGAAAAAGAAC
1 AAAAAAAAAGAGAAAAAGAAC
*
12568 AAAAAAATAGAGAAAAAGAA
1 AAAAAAAAAGAGAAAAAGAA
12588 AAATAAGGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.80, C:0.02, G:0.15, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAGAGAAAAAGAAC
Found at i:13750 original size:66 final size:65
Alignment explanation
Indices: 13643--13920 Score: 220
Period size: 66 Copynumber: 4.4 Consensus size: 65
13633 ACAATACTTG
* *
13643 GATTTTAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTTACAACAAAGGGGCCATCCA
1 GATTTTAACTTCACGATGAAGGATATCCAATTCAAGGCTCAACTTCACAACAAA-GGGCCATCCA
13708 C
65 C
* * * * *
13709 TATTTTAACTTCACGATGAATGATATCCAATTCAAGGCTCAACTTCACAACGAATGGTCATCCAC
1 GATTTTAACTTCACGATGAAGGATATCCAATTCAAGGCTCAACTTCACAACAAAGGGCCATCCAC
* * * * * ** * * **
13774 GATTTCAACTCCACGATGGAGGATAT-C--GT----GC-CCACAAC-CAACATA---CAATACTT
1 GATTTTAACTTCACGATGAAGGATATCCAATTCAAGGCTCAACTTCACAACAAAGGGCCAT-CCA
*
13827 G
65 C
* * *
13828 GATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCATCCA
1 GATTTTAACTTCACGATGAAGGATATCCAATTCAAGGCTCAACTTCACAAC-AAAGGGCCATCCA
13893 C
65 C
* * *
13894 GATTTCAACTTCATGACGAAGGATATC
1 GATTTTAACTTCACGATGAAGGATATC
13921 GTGCATACAA
Statistics
Matches: 161, Mismatches: 37, Indels: 28
0.71 0.16 0.12
Matches are distributed among these distances:
53 2 0.01
54 24 0.15
55 1 0.01
56 5 0.03
57 5 0.03
58 2 0.01
61 2 0.01
62 5 0.03
63 4 0.02
64 2 0.01
65 30 0.19
66 76 0.47
67 3 0.02
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (65 bp):
GATTTTAACTTCACGATGAAGGATATCCAATTCAAGGCTCAACTTCACAACAAAGGGCCATCCAC
Found at i:13853 original size:185 final size:186
Alignment explanation
Indices: 13523--13920 Score: 582
Period size: 185 Copynumber: 2.1 Consensus size: 186
13513 AACCAGATTG
13523 TATTTCAACTTCATGATGAATGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGACATCCA
1 TATTTCAACTTCATGATGAATGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGACATCCA
* ** * * * * * ** *
13588 TGATTTTGACTTCATGACGAAGGATATTGTATCCACCAGTAACATACAATACTTGGATTTTAACT
66 CGATTTCAACTCCACGACGAAGGATATCGTACCCACAACCAACATACAATACTTGGATTTCAACT
*
13653 TCACGACGAAGGATATCCAATTCAAGGCTCAACTTTACAACAAAGGGGCCATCCAC
131 TCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACAAAGGGGCCATCCAC
* * * *
13709 TATTTTAACTTCACGATGAATGATATCCAATTCAAGGCTCAACTTCACAACGAA-TGGTCATCCA
1 TATTTCAACTTCATGATGAATGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGACATCCA
* * *
13773 CGATTTCAACTCCACGATGGAGGATATCGTGCCCACAACCAACATACAATACTTGGATTTCAACT
66 CGATTTCAACTCCACGACGAAGGATATCGTACCCACAACCAACATACAATACTTGGATTTCAACT
*
13838 TCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCATCCAC
131 TCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACAAAGGGGCCATCCAC
* * *
13894 GATTTCAACTTCATGACGAAGGATATC
1 TATTTCAACTTCATGATGAATGATATC
13921 GTGCATACAA
Statistics
Matches: 187, Mismatches: 25, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
185 135 0.72
186 52 0.28
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (186 bp):
TATTTCAACTTCATGATGAATGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGACATCCA
CGATTTCAACTCCACGACGAAGGATATCGTACCCACAACCAACATACAATACTTGGATTTCAACT
TCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACAAAGGGGCCATCCAC
Found at i:13977 original size:121 final size:119
Alignment explanation
Indices: 13710--14109 Score: 503
Period size: 121 Copynumber: 3.3 Consensus size: 119
13700 GCCATCCACT
* * * * *
13710 ATTTTAACTTCACGATGAATGATATCCAATTCAAGGCTCAACTTCACAACGAATGGTCATCCACG
1 ATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGCCATCCACG
* * * * *
13775 ATTTCAACTCCACGATGGAGGATATCGTGCCCACAACCAACATACAATACTTGG
66 ATTTCAACTTCACGACGAAGGATATCGTGCCCACAAGCAACATACAACACTTGG
13829 ATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCATCCAC
1 ATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAA-GGGCCATCCAC
* ** * * *
13894 GATTTCAACTTCATGACGAAGGATATCGTGCATACAAGCAGCAATGCAACCCTTGG
65 GATTTCAACTTCACGACGAAGGATATCGTGCCCACAAGCAAC-ATACAACACTTGG
* * *
13950 ATTTCAACTTCACGACGAAGGATATCCAATTTAAGGCTCAACTTCACAATGAATGGGCCATCCAA
1 ATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAA-GGGCCATCCAC
* * * *
14015 GATTTCAACTTCACGACGAAGGATATCGTGCCCACAAGCAATATCCATCTCTAGATTGG
65 GATTTCAACTTCACGACGAAGGATATCGTGCCCACAAGCAACATACA--AC-A-CTTGG
* * *
14074 ATTTCAACTTCACGATGAAGGATAACCAACTCAAGG
1 ATTTCAACTTCACGACGAAGGATATCCAATTCAAGG
14110 AAGGAGTGTC
Statistics
Matches: 242, Mismatches: 33, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
119 50 0.21
120 47 0.19
121 108 0.45
122 1 0.00
124 36 0.15
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.24
Consensus pattern (119 bp):
ATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGCCATCCACG
ATTTCAACTTCACGACGAAGGATATCGTGCCCACAAGCAACATACAACACTTGG
Found at i:14954 original size:14 final size:14
Alignment explanation
Indices: 14935--14962 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14925 GCCCCAATCT
14935 CTTCTGCGCCGCAA
1 CTTCTGCGCCGCAA
14949 CTTCTGCGCCGCAA
1 CTTCTGCGCCGCAA
14963 TAGCCCCCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.43, G:0.21, T:0.21
Consensus pattern (14 bp):
CTTCTGCGCCGCAA
Found at i:16202 original size:6 final size:6
Alignment explanation
Indices: 16191--16218 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
16181 TTGGAATCGT
16191 TTTTAA TTTTAA TTTTAA TTTTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTT
16219 CGCAATTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:17524 original size:20 final size:20
Alignment explanation
Indices: 17430--17797 Score: 440
Period size: 20 Copynumber: 18.4 Consensus size: 20
17420 GATTTTCCAT
* ** *
17430 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
17450 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
17470 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
17490 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
17510 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
17530 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
17550 TATCGCAACGCATATCCGTA
1 AATCGCAACGCGTATCCGTA
17570 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
17590 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
17610 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
17630 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
17650 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
17670 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
17690 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
17710 AATCGCAACG-ATAATCCGT-
1 AATCGCAACGCGT-ATCCGTA
* * *
17729 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
17749 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
17769 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
17789 AATCACAAC
1 AATCGCAAC
17798 ACTGAAATTT
Statistics
Matches: 301, Mismatches: 38, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
19 18 0.06
20 280 0.93
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:20986 original size:19 final size:19
Alignment explanation
Indices: 20964--21267 Score: 361
Period size: 19 Copynumber: 17.3 Consensus size: 19
20954 CGGAAAATAC
*
20964 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
20983 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
20997 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
21017 AATCGCAA--CG--AT-AG
1 AATCGCAATGCGAAATGAA
21031 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
21050 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
21069 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
21083 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
21102 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
21121 AATCGCAA--CGACA-G--
1 AATCGCAATGCGAAATGAA
*
21135 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
21154 AATCGCAATGTGAAATGAA
1 AATCGCAATGCGAAATGAA
21173 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
21192 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
21211 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
21225 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
21244 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
21263 AATCG
1 AATCG
21268 GAACGAGATA
Statistics
Matches: 247, Mismatches: 12, Indels: 52
0.79 0.04 0.17
Matches are distributed among these distances:
14 47 0.19
15 3 0.01
16 16 0.06
17 14 0.06
18 4 0.02
19 150 0.61
20 13 0.05
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:21051 original size:33 final size:34
Alignment explanation
Indices: 20964--21292 Score: 281
Period size: 33 Copynumber: 9.5 Consensus size: 34
20954 CGGAAAATAC
* *
20964 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
*
20997 AATCGCAATGCGGAAATGAAAATCGCAACGAT-AG
1 AATCGCAATGC-GAAATGAAAATCGCAACGATGAA
21031 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
21069 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
* *
21102 AATCGCAATGCGAAATGAAAATCGCAACGA-CAG
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
* *
21135 AATCGCAATGCGAAATTAAAATCGCAATGTGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
21173 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
21211 AATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
* *
21244 AATCGCAATGCGAAATGAAAATCGGAACGA-GAT
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
21277 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
21293 TATAAACGCA
Statistics
Matches: 258, Mismatches: 16, Indels: 44
0.81 0.05 0.14
Matches are distributed among these distances:
33 127 0.49
34 31 0.12
35 13 0.05
36 12 0.05
37 4 0.02
38 71 0.28
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (34 bp):
AATCGCAATGCGAAATGAAAATCGCAACGATGAA
Found at i:21079 original size:52 final size:52
Alignment explanation
Indices: 20992--21267 Score: 364
Period size: 52 Copynumber: 5.2 Consensus size: 52
20982 AAATCCCAAC
20992 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGATAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGATAGAATCGCAATGCGAA
*
21045 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGATAGAATCGCAATGCGAA
*
21097 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGATAGAATCGCAATGCGAA
* * *
21149 ATTAAAATCGCAATGTGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--AT-AGAATCGCAATGCGAA
*
21206 ATGAAAATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--AT-AGAATCGCAATGCGAA
21258 ATGAAAATCG
1 ATGAAAATCG
21268 GAACGAGATA
Statistics
Matches: 210, Mismatches: 8, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
52 159 0.76
53 16 0.08
54 3 0.01
55 4 0.02
56 1 0.00
57 27 0.13
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGATAGAATCGCAATGCGAA
Found at i:21115 original size:71 final size:71
Alignment explanation
Indices: 21031--21267 Score: 358
Period size: 71 Copynumber: 3.3 Consensus size: 71
21021 GCAACGATAG
*
21031 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
21096 AATGAA
66 AATGAA
* *
21102 AATCGCAATGCGAAATGAAAATCGCAA--CGACA-G--AATCGCAATGCGAAATTAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG-AA--AGAATCGCAA
*
21162 TGTGAAATGAA
61 TGCGAAATGAA
21173 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
21238 AATGAA
66 AATGAA
21244 AATCGCAATGCGAAATGAAAATCG
1 AATCGCAATGCGAAATGAAAATCG
21268 GAACGAGATA
Statistics
Matches: 149, Mismatches: 7, Indels: 20
0.85 0.04 0.11
Matches are distributed among these distances:
66 8 0.05
68 3 0.02
69 5 0.03
71 116 0.78
73 6 0.04
74 3 0.02
76 8 0.05
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (71 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
AATGAA
Found at i:21216 original size:142 final size:135
Alignment explanation
Indices: 20964--21302 Score: 491
Period size: 142 Copynumber: 2.4 Consensus size: 135
20954 CGGAAAATAC
* * *
20964 AATCGCAACGCGAAATGAAAATCCCAACATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAT
1 AATCGCAATGCGAAATGAAAATCGCAAC--GAAAATCGCAATGC-GAAATTAAAATCGCAACGAT
* *
21029 AGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGC
63 AAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGC
21094 GAAATGAA
128 GAAATGAA
*
21102 AATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGCGAAATTAAAATCGCAATGTGA
1 AATCGCAATGCGAAATGAAAATCGCAACGA-A-AATCGCAATGCGAAATTAAAATCGCAA--CG-
21167 AATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCA
61 -AT-AAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCA
21232 ATGCGAAATGAA
124 ATGCGAAATGAA
*
21244 AATCGCAATGCGAAATGAAAATCGGAACGAGATAATCGCAATGCGAAATTATAAA-CGCA
1 AATCGCAATGCGAAATGAAAATCGCAACGA-A-AATCGCAATGCGAAATTA-AAATCGCA
21303 TTGCGATTTT
Statistics
Matches: 184, Mismatches: 9, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
136 2 0.01
137 16 0.09
138 37 0.20
139 1 0.01
141 2 0.01
142 123 0.67
143 3 0.02
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (135 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAAAATCGCAATGCGAAATTAAAATCGCAACGATAAA
ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
ATGAA
Found at i:21273 original size:52 final size:55
Alignment explanation
Indices: 20964--21292 Score: 314
Period size: 52 Copynumber: 6.3 Consensus size: 55
20954 CGGAAAATAC
* *
20964 AATCGCAACGCGAAATGAAAATCCCAA--C---ATGAAAATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-GC-GAAATG-A
*
21017 AATCGCAA--CG--AT-AGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCGAAATG-A
*
21069 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCGAAATG-A
* * *
21121 AATCGCAA--CGACA-G--AATCGCAATGCGAAATTAAAATCGCAATGTGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCGAAATG-A
21173 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-CGAAA-G-
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAGCGAAATGA
* *
21225 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGGAA-CGAGAT--
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAGCGAAATGA
21277 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
21293 TATAAACGCA
Statistics
Matches: 253, Mismatches: 9, Indels: 29
0.87 0.03 0.10
Matches are distributed among these distances:
48 8 0.03
49 2 0.01
50 1 0.00
51 2 0.01
52 178 0.70
53 24 0.09
54 7 0.03
55 5 0.02
57 26 0.10
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (55 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAGCGAAATGA
Found at i:21408 original size:19 final size:19
Alignment explanation
Indices: 21299--21400 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
21289 AAATTATAAA
21299 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
21318 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
21338 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
21354 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
21371 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
21390 CGCATTGCGAT
1 CGCATTGCGAT
21401 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:21523 original size:13 final size:14
Alignment explanation
Indices: 21507--21542 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
21497 CATCAATTAC
21507 ACAAATCAAC-TTT
1 ACAAATCAACTTTT
*
21520 ACAAATCATCTTTT
1 ACAAATCAACTTTT
21534 ACAAATCAA
1 ACAAATCAA
21543 TTAAACAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:23539 original size:14 final size:14
Alignment explanation
Indices: 23520--23576 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
23510 GCGAAATGAA
*
23520 AATCGCAACGACAG
1 AATCGCAACGAAAG
23534 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
23551 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
23567 AATCGCAACG
1 AATCGCAACG
23577 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:23547 original size:33 final size:33
Alignment explanation
Indices: 23501--23593 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
23491 GCGAAACCAA
*
23501 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
23534 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
23567 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
23594 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:23558 original size:19 final size:19
Alignment explanation
Indices: 23464--23598 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
23454 TAGTTTACTT
* *
23464 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
23484 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
23503 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
23522 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
23536 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
23555 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
23569 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
23588 TCGCAATGCGA
1 TCGCAACGCGA
23599 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:23616 original size:19 final size:19
Alignment explanation
Indices: 23594--23722 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
23584 AAAATCGCAA
23594 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
23613 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
23627 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
23646 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
23660 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
23679 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
23698 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
23718 TGCGA
1 TGCGA
23723 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:23636 original size:33 final size:33
Alignment explanation
Indices: 23594--23685 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
23584 AAAATCGCAA
23594 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
23627 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
23660 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
23686 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:24775 original size:14 final size:14
Alignment explanation
Indices: 24756--24845 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
24746 TTGAAATGAA
24756 AATCGCAACGAGAG
1 AATCGCAACGAGAG
24770 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
24787 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
24803 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
24822 AATCGCAACGAGAG
1 AATCGCAACGAGAG
24836 AATCGCAACG
1 AATCGCAACG
24846 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:24793 original size:33 final size:33
Alignment explanation
Indices: 24748--24862 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
24738 TCTTTTGGTT
24748 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
24781 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
24814 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
24847 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
24863 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:24794 original size:19 final size:18
Alignment explanation
Indices: 24755--24867 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
24745 GTTGAAATGA
24755 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
24770 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
24787 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
24803 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
24820 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
24836 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
24853 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
24868 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:24911 original size:33 final size:33
Alignment explanation
Indices: 24863--24933 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
24853 AAAATCGCAA
** *
24863 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
24896 TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
24929 TGCGA
1 TGCGA
24934 CAGTCATTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.10, C:0.21, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
Found at i:24941 original size:33 final size:33
Alignment explanation
Indices: 24874--24955 Score: 110
Period size: 33 Copynumber: 2.5 Consensus size: 33
24864 GCGATTTTGG
* ***
24874 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTATCTCGTTGCGACAGTCA
24907 TTTCGCGTTGCGATTATCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTATCTCGTTGCGACAGTCA
*
24940 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
24956 TTCATTTATC
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 31 0.72
34 12 0.28
ACGTcount: A:0.11, C:0.24, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTATCTCGTTGCGACAGTCA
Found at i:24960 original size:20 final size:19
Alignment explanation
Indices: 24890--24974 Score: 72
Period size: 20 Copynumber: 4.6 Consensus size: 19
24880 GTTGCGATTC
24890 TCTCGTTGCGATTTTCATT
1 TCTCGTTGCGATTTTCATT
*
24909 TCGCGTTGCGA--TT-A--
1 TCTCGTTGCGATTTTCATT
***
24923 TCTCGTTGCGACAGTCATT
1 TCTCGTTGCGATTTTCATT
24942 CTCTCGTTGCGATTTTCATTT
1 -TCTCGTTGCGATTTTCA-TT
24963 ATCTCGTTGCGA
1 -TCTCGTTGCGA
24975 CTCTTCTGCA
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
14 10 0.19
16 2 0.04
17 3 0.06
19 10 0.19
20 14 0.27
21 13 0.25
ACGTcount: A:0.13, C:0.24, G:0.20, T:0.44
Consensus pattern (19 bp):
TCTCGTTGCGATTTTCATT
Found at i:25096 original size:33 final size:33
Alignment explanation
Indices: 25054--25124 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
25044 AATACTAACT
*
25054 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
25087 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
25120 TGAAA
1 TGAAA
25125 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:25358 original size:22 final size:22
Alignment explanation
Indices: 25306--25360 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
25296 TGGTTGTGAG
**
25306 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
25328 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
25350 GGATTTCTTCG
1 GGATTTCTTCG
25361 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:25531 original size:20 final size:20
Alignment explanation
Indices: 25506--25698 Score: 219
Period size: 20 Copynumber: 9.6 Consensus size: 20
25496 CTTTAAATAT
25506 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
25526 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
25548 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
25567 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
*
25587 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
25607 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
25627 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
25647 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
25667 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
25687 CGCGTTGCGATT
1 CGCGTTGCGATT
25699 ATGGAAAATC
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
19 2 0.01
20 129 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:25779 original size:20 final size:20
Alignment explanation
Indices: 25754--25805 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
25744 AAGAATCGCG
*
25754 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
25774 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
25794 TTGCGATTCTGG
1 TTGCGATTCTGG
25806 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:26504 original size:5 final size:5
Alignment explanation
Indices: 26488--26586 Score: 129
Period size: 5 Copynumber: 20.4 Consensus size: 5
26478 TTTCACTTGT
26488 ATATA TATATA ATATA ATATA ATAT- A-ATA ATATA ATATA ATAT- ATATA
1 ATATA -ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
26536 ATATA ATA-A TATAATA ATATA ATATA ATAT- ATAT- ATATA ATATA ATATA
1 ATATA ATATA -AT-ATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
26585 AT
1 AT
26587 GAATTAAATT
Statistics
Matches: 86, Mismatches: 0, Indels: 15
0.85 0.00 0.15
Matches are distributed among these distances:
3 2 0.02
4 15 0.17
5 60 0.70
6 8 0.09
7 1 0.01
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:26508 original size:18 final size:18
Alignment explanation
Indices: 26487--26584 Score: 144
Period size: 18 Copynumber: 5.2 Consensus size: 18
26477 CTTTCACTTG
26487 TATATATATATAATATAA
1 TATATATATATAATATAA
26505 TATA-ATATAATAATATAA
1 TATATATAT-ATAATATAA
26523 TATAATATATATAATATAA
1 TAT-ATATATATAATATAA
26542 TAATATAATAATATAATATAA
1 T-ATAT-AT-ATATAATATAA
26563 TATATATATATAATATAA
1 TATATATATATAATATAA
26581 TATA
1 TATA
26585 ATGAATTAAA
Statistics
Matches: 74, Mismatches: 0, Indels: 12
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.05
18 31 0.42
19 15 0.20
20 12 0.16
21 12 0.16
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TATATATATATAATATAA
Found at i:26517 original size:13 final size:13
Alignment explanation
Indices: 26501--26582 Score: 123
Period size: 13 Copynumber: 6.2 Consensus size: 13
26491 TATATATAAT
26501 ATAATATAATATA
1 ATAATATAATATA
26514 ATAATATAATATA
1 ATAATATAATATA
26527 ATATATATAATATA
1 ATA-ATATAATATA
26541 ATAATATAATA-A
1 ATAATATAATATA
26553 TATAATATAATAT-
1 -ATAATATAATATA
26566 ATATATATAATATA
1 ATA-ATATAATATA
26580 ATA
1 ATA
26583 TAATGAATTA
Statistics
Matches: 64, Mismatches: 0, Indels: 9
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.06
13 44 0.69
14 16 0.25
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAATATAATATA
Found at i:26545 original size:35 final size:37
Alignment explanation
Indices: 26490--26586 Score: 173
Period size: 35 Copynumber: 2.7 Consensus size: 37
26480 TCACTTGTAT
26490 ATATATATAATATAATATAATATAATAATATAATATA
1 ATATATATAATATAATATAATATAATAATATAATATA
26527 ATATATATAATAT-A-ATAATATAATAATATAATATA
1 ATATATATAATATAATATAATATAATAATATAATATA
26562 ATATATAT-ATATAATATAATATAAT
1 ATATATATAATATAATATAATATAAT
26587 GAATTAAATT
Statistics
Matches: 58, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
34 4 0.07
35 30 0.52
36 11 0.19
37 13 0.22
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (37 bp):
ATATATATAATATAATATAATATAATAATATAATATA
Found at i:36060 original size:2 final size:2
Alignment explanation
Indices: 36053--36083 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
36043 CGGAGTTATT
36053 TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
36084 GTAATATAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36214 original size:113 final size:104
Alignment explanation
Indices: 36075--36556 Score: 359
Period size: 113 Copynumber: 4.5 Consensus size: 104
36065 TATATATTAT
* *
36075 ATATATATAGTAATATAGTTTGTGAAAATGTTTTTTGACGAAATATAATATATAATTTTCAGAAA
1 ATATATATAAT-ATATAGTTT-TGAAAAT-TTTTTTGA--AAATATAATATATAGTTTT-A-AAA
* * *
36140 ATGATTTTCGAAATTTTATATATTATATAGTTTTTGAAAACATTTTTAAA
59 A--ATTTT-GAAA-ATTATATAATATATAGTTTTTAAAAACATTTTTAAA
* *
36190 ATATATATAATATATAGTTTTGAAAA--TATTT----ATATATTATATAGTTTTTAAAACAATTT
1 ATATATATAATATATAGTTTTGAAAATTTTTTTGAAAATATAATATATAG-TTTTAAAA-AATTT
*
36249 TGAAAACTTATATAATATATAGTTTTTTAAAACATTTTTGAGAA
64 TGAAAA-TTATATAATATATAGTTTTTAAAAACATTTTT-A-AA
* * * *
36293 AT-TATATAATACATCGTTTTAAAAATATTTTTGAAAAAATTATATAATATATAGTTTTAAAAAC
1 ATATATATAATATATAGTTTTGAAAATTTTTTTG---AAA--ATATAATATATAGTTTTAAAAA-
*
36357 ATTTTTGGAAAATTATATAATATATAGTTTTAAAAAACATTTTTAAA
60 A-TTTT-GAAAATTATATAATATATAGTTTTTAAAAACATTTTTAAA
* * *
36404 AAATTATATAATATATAGTTTT-AGAAATATTTTTTGAAAACT-T-ATATATATTTTTAAAACAT
1 ATA-TATATAATATATAGTTTTGA-AAAT-TTTTTTGAAAA-TATAATATATAGTTTTAAAAAAT
* * * * *
36466 TTTGAAAACTATATAATGTATAG-TTTTGAAATC-TTTTTTAA
62 TTTGAAAATTATATAATATATAGTTTTTAAAAACATTTTTAAA
*
36507 A-A-ATAT-A-ATATAG-TTTAAAAATATTTTTTGAAATATATATATTATATAGT
1 ATATATATAATATATAGTTTTGAAAAT-TTTTTTGAAA-ATATA-A-TATATAGT
36557 ATTATTATTT
Statistics
Matches: 310, Mismatches: 27, Indels: 74
0.75 0.07 0.18
Matches are distributed among these distances:
97 19 0.06
98 9 0.03
99 1 0.00
100 5 0.02
101 41 0.13
102 27 0.09
103 15 0.05
104 24 0.08
105 22 0.07
106 4 0.01
107 1 0.00
108 15 0.05
109 2 0.01
110 5 0.02
111 7 0.02
112 11 0.04
113 72 0.23
114 20 0.06
115 10 0.03
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.46
Consensus pattern (104 bp):
ATATATATAATATATAGTTTTGAAAATTTTTTTGAAAATATAATATATAGTTTTAAAAAATTTTG
AAAATTATATAATATATAGTTTTTAAAAACATTTTTAAA
Found at i:36215 original size:25 final size:26
Alignment explanation
Indices: 36182--36242 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 26
36172 TTTGAAAACA
36182 TTTTTAAAATA-TATATAATATATAG
1 TTTTTAAAATATTATATAATATATAG
* *
36207 TTTTGAAAATATTTATATATTATATAG
1 TTTTTAAAATA-TTATATAATATATAG
36234 TTTTTAAAA
1 TTTTTAAAA
36243 CAATTTTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 10 0.32
27 21 0.68
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (26 bp):
TTTTTAAAATATTATATAATATATAG
Found at i:36222 original size:64 final size:63
Alignment explanation
Indices: 36150--36496 Score: 209
Period size: 75 Copynumber: 5.0 Consensus size: 63
36140 ATGATTTTCG
*
36150 AAATTTTATATATTATATAGTTTTTGAAAAC-ATTTTTAAAA-TATATATAATATATAGTTTTGA
1 AAATTTTATATATTATATAGTTTTT-AAAACAATTTTGAAAACT-TATATAATATATAGTTTTGA
*
36213 AAATATTTATATATTATATAGTTTTTAAAACAATTTTGAAAACTTATATAATATATAGTTTTTTA
1 AAAT-TTTATATATTATATAGTTTTTAAAACAATTTTGAAAACTTATATAATATATAG--TTTTG
36278 A
63 A
* * * *
36279 AACATTTTTGAGAAATTATATAATACATCGTTTTAAAA-ATATTTTTGAAAAAATTATATAATAT
1 AA-A-TTTT-ATATA-T-TAT-ATA-GT--TTTTAAAACA-A-TTTTG-AAAACTTATATAATAT
*
36343 ATAGTTTTAAA
54 ATAGTTTT-GA
* * * *
36354 AACATTTTTGGAAAATTATATAATATATAGTTTTAAAAAACATTTTTAAAAAATTATATAATATA
1 AA-A-TTTT-----A-TATAT--TATATAGTTTT-TAAAACAATTTTGAAAACTTATATAATATA
36419 TAGTTTTAGA
55 TAGTTTT-GA
* * * *
36429 AATATTTTTTGAAAACTTATATATATTTTTAAAAC-ATTTTGAAAAC-TATATAATGTATAGTTT
1 AA-ATTTTAT--ATA-TTATATA-GTTTTTAAAACAATTTTGAAAACTTATATAATATATAGTTT
36492 TGA
61 TGA
36495 AA
1 AA
36497 TCTTTTTTAA
Statistics
Matches: 231, Mismatches: 23, Indels: 57
0.74 0.07 0.18
Matches are distributed among these distances:
63 9 0.04
64 44 0.19
65 1 0.00
66 11 0.05
67 21 0.09
68 13 0.06
69 12 0.05
70 9 0.04
71 4 0.02
72 1 0.00
73 1 0.00
74 17 0.07
75 45 0.19
76 26 0.11
77 4 0.02
78 2 0.01
79 5 0.02
80 6 0.03
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (63 bp):
AAATTTTATATATTATATAGTTTTTAAAACAATTTTGAAAACTTATATAATATATAGTTTTGA
Found at i:36231 original size:36 final size:37
Alignment explanation
Indices: 36156--36430 Score: 179
Period size: 38 Copynumber: 7.6 Consensus size: 37
36146 TTCGAAATTT
* *
36156 TATATATTATATAGTTTTTGAAAACATTTTTAAAATA
1 TATATAATATATAGTTTTTGAAAACATTTATAAAATA
36193 TATATAATATATAG-TTTTG-AAA-A--TAT----T-
1 TATATAATATATAGTTTTTGAAAACATTTATAAAATA
*
36220 TATATATTATATAGTTTTT-AAAACAATTT-TGAAAACT-
1 TATATAATATATAGTTTTTGAAAAC-ATTTAT-AAAA-TA
* *
36257 TATATAATATATAGTTTTTTAAAACATTTTTGAGAAAT-
1 TATATAATATATAGTTTTTGAAAACATTTAT-A-AAATA
* * * * * *
36295 TATATAATACATCG-TTTTAAAAATATTTTTGAAAAAA
1 TATATAATATATAGTTTTTGAAAACATTTAT-AAAATA
* *
36332 TTATATAATATATAG-TTTTAAAAACATTTTTGGAAAAT-
1 -TATATAATATATAGTTTTTGAAAACATTTAT--AAAATA
** * *
36370 TATATAATATATAGTTTTAAAAAACATTTTTAAAAAA
1 TATATAATATATAGTTTTTGAAAACATTTATAAAATA
*
36407 TTATATAATATATAGTTTTAGAAA
1 -TATATAATATATAGTTTTTGAAA
36431 TATTTTTTGA
Statistics
Matches: 201, Mismatches: 16, Indels: 41
0.78 0.06 0.16
Matches are distributed among these distances:
27 13 0.06
28 8 0.04
30 1 0.00
31 1 0.00
32 3 0.01
34 1 0.00
35 3 0.01
36 12 0.06
37 66 0.33
38 85 0.42
39 8 0.04
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (37 bp):
TATATAATATATAGTTTTTGAAAACATTTATAAAATA
Found at i:36280 original size:38 final size:37
Alignment explanation
Indices: 36219--36492 Score: 291
Period size: 38 Copynumber: 7.5 Consensus size: 37
36209 TTGAAAATAT
* *
36219 TTATATATTATATAGTTTTTAAAACAATTTTGAAAAC
1 TTATATAATATATAGTTTTTAAAACATTTTTGAAAAC
36256 TTATATAATATATAGTTTTTTAAAACATTTTTGAGAAA-
1 TTATATAATATATAG-TTTTTAAAACATTTTTGA-AAAC
* * * * *
36294 TTATATAATACATCGTTTTAAAAATATTTTTGAAAAAA
1 TTATATAATATATAGTTTTTAAAACATTTTTG-AAAAC
*
36332 TTATATAATATATAGTTTTAAAAACATTTTTGGAAAA-
1 TTATATAATATATAGTTTTTAAAACATTTTT-GAAAAC
* * *
36369 TTATATAATATATAGTTTTAAAAAACATTTTTAAAAAA
1 TTATATAATATATAGTTTT-TAAAACATTTTTGAAAAC
*
36407 TTATATAATATATAG-TTTTAGAAATATTTTTTGAAAAC
1 TTATATAATATATAGTTTTTA-AAACA-TTTTTGAAAAC
36445 ---T-T-ATATATA-TTTTTAAAACA-TTTTGAAAAC
1 TTATATAATATATAGTTTTTAAAACATTTTTGAAAAC
*
36475 -TATATAATGTATAGTTTT
1 TTATATAATATATAGTTTT
36493 GAAATCTTTT
Statistics
Matches: 206, Mismatches: 16, Indels: 32
0.81 0.06 0.13
Matches are distributed among these distances:
30 10 0.05
32 5 0.02
33 13 0.06
34 7 0.03
35 5 0.02
36 1 0.00
37 62 0.30
38 99 0.48
39 4 0.02
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.46
Consensus pattern (37 bp):
TTATATAATATATAGTTTTTAAAACATTTTTGAAAAC
Found at i:36298 original size:75 final size:74
Alignment explanation
Indices: 36219--36556 Score: 298
Period size: 75 Copynumber: 4.7 Consensus size: 74
36209 TTGAAAATAT
* * *
36219 TTATATATTATATAGTTTTTAAAACAATTTTGAAAACTTATATAATATATAGTTTTTTAAAACAT
1 TTATATAATATATAGTTTTAAAAACAATTTTGAAAAATTATATAATATATAG-TTTTTAAAACAT
36284 TTTTGAGAAA
65 TTTTGAGAAA
* * * * *
36294 TTATATAATACATCGTTTTAAAAATATTTTTGAAAAAATTATATAATATATAGTTTTAAAAACAT
1 TTATATAATATATAGTTTTAAAAACAATTTTG-AAAAATTATATAATATATAGTTTTTAAAACAT
36359 TTTTG-GAAAA
65 TTTTGAG-AAA
* * *
36369 TTATATAATATATAGTTTTAAAAAACATTTTTAAAAAATTATATAATATATAG-TTTTAGAAATA
1 TTATATAATATATAGTTTT-AAAAACAATTTTGAAAAATTATATAATATATAGTTTTTA-AAACA
36433 TTTTTTGA-AAA
64 -TTTTTGAGAAA
* * * * *
36444 CT-TAT-ATATAT--TTTT-AAAAC-ATTTTG-AAAACTATATAATGTATAGTTTTGAAATC-TT
1 TTATATAATATATAGTTTTAAAAACAATTTTGAAAAATTATATAATATATAGTTTTTAAAACATT
*
36501 TTTTA-AAA
66 TTTGAGAAA
* * * *
36509 --ATAT-A-ATATAG-TTTAAAAATATTTTTTGAAATA-TATATATTATATAGT
1 TTATATAATATATAGTTTTAAAAACA-ATTTTGAAAAATTATATAATATATAGT
36557 ATTATTATTT
Statistics
Matches: 221, Mismatches: 28, Indels: 36
0.78 0.10 0.13
Matches are distributed among these distances:
63 4 0.02
64 7 0.03
65 13 0.06
67 37 0.17
68 11 0.05
69 5 0.02
71 4 0.02
73 6 0.03
74 8 0.04
75 90 0.41
76 36 0.16
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (74 bp):
TTATATAATATATAGTTTTAAAAACAATTTTGAAAAATTATATAATATATAGTTTTTAAAACATT
TTTGAGAAA
Found at i:37385 original size:17 final size:17
Alignment explanation
Indices: 37358--37396 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
37348 AATTTACAAT
37358 TAATT-TAAATAATATC
1 TAATTATAAATAATATC
37374 TAATTATAAATAATATC
1 TAATTATAAATAATATC
37391 TAATTA
1 TAATTA
37397 ATTTGATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTATAAATAATATC
Found at i:37472 original size:11 final size:11
Alignment explanation
Indices: 37456--37480 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37446 AATATTGATT
37456 TGGGTTTTAAA
1 TGGGTTTTAAA
37467 TGGGTTTTAAA
1 TGGGTTTTAAA
37478 TGG
1 TGG
37481 ATTGGGCCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (11 bp):
TGGGTTTTAAA
Found at i:41043 original size:631 final size:631
Alignment explanation
Indices: 39452--52558 Score: 13723
Period size: 631 Copynumber: 20.7 Consensus size: 631
39442 ATTAACAATT
* * *
39452 GTTAACGTATGAGTTCCCCTGAAATCCTACTAGGCGTGAACATTGTCACCTTCTTCTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
* * **
39517 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCTGGGATGTTTTATTAGGTAGATTCTCTCTCTAT
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
* *
39582 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGCTGTTTCTTATTGTTGGAC
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
39647 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
* *
39712 GAATTAGTACGGCTACAGCCAATAACTCTTCCAACTATAGTTTCTTGCACTGATTGCTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
39777 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
39842 TTCAGAT--A-GAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
39904 CATTTTATATATTAATGTAACACTAGAGCATT-TCTCTTTAACACAGCTCAGTTTAATATACTGG
456 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
**
39968 GTTCCAATAAAAGCCTAGA-TACCGACGTAGGAAAAAAGGGTAATGATATGGGTTCTCGTAAAAG
521 GTTCCAATAAAAGCCTA-ATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAG
* * *
40032 CCTAATTCCAGAGGTAGGTAATAAAGCTTACAATCCTTTTACTTAGG
585 CCTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
* * *
40079 GTTACCGTATGAGTTCCCCTAAAATCCTACTAGGCGTGGAC--TGTCACATTCTTCTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
* * * *
40142 ATC-AAAGAACAGGTGGTGCGGTCTACCTTCCCAGGACGTTTTATTAGGTAGATTCTCTCTCTAC
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
* *
40206 TAC-AACTGAAGCTTTGGTCTTTAGTGACAGAG--AGTTTAATCTGATGTGTCTGATTGTTGGAC
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
*
40268 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCATAAGCTATTTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
* * *
40333 GAATTAGTACAGCTACAACCAATAACTCTTCCAACTACCGTTTCTTGCACTGATTACTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
*
40398 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTTAGCCGATTGGATTCTTGGGAATGCAACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
* * *
40463 TTCAGATAGAGAAGAACTCTCTATTAAAGATAGGATAGACGGCGTAAAAGACTCATCGAGACATT
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
*
40528 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCCGTTTAATATACTGG
456 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
* *
40593 GTTCCAATAAAAGCCTAATTACCGACGTAGGAACGAAGGGTAATGATACGGGTTCTCGTAAAAGC
521 GTTCCAATAAAAGCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAGC
* *
40658 CTAATTCCAGATGTAGGTAACAAGGCTTACAATCCTGTTACTTAGG
586 CTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
*
40704 GTTACTGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
* *
40769 ATCAAAAGAACAGGTGGTGGGGTCTACCTTCTCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
*
40834 TACAAACTGAAGCTTTGGTGTTTAGTGATAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
*
40899 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTATTGTCAAGTCACAAGCTATTTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
40964 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
41029 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
41094 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
* *
41159 CGTTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATATTGG
456 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
* ** * *
41224 GTTCCAATAAAAGCCTAATTACCGACGTATGAAAAAAGGGTAATTATATGGGTTATCGTAAAAGC
521 GTTCCAATAAAAGCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAGC
* *
41289 CTAATTCCAGACGTAGGTAATAAGGCTTATAATCATGTTACTTAGG
586 CTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
* * * *
41335 GTTACCGTATTAGTTCCCCTAAAATCCTGCTAGGCGTGGACAATGTCACCTTCGTCTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
* *
41400 ATCAAAGAACAGAACAGGTGGTGGGGTCCACCTTCACGGGACATTTTATTA-GTAGATTCTCTCT
66 ATC--A-AA-AGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCT
* * *
41464 CTGCTA-TAACTGAAGCTTTGGTCTTTAGTGACAGAGAAAGTTTAATCTGATGTGTCTGATTGTT
127 CTGCTACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTT
*
41528 GGACTTTG-ATCCACTGTTAGTTGACGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGA
192 GGACTTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGA
41592 TTTGGAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTG
257 TTTGGAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTG
41657 AGCCATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGC
322 AGCCATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGC
*
41722 AACTTTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAATACTCATCGAGT
387 AACTTTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGT
* *
41787 CATTCA-TTTATATATTAATGTAACACTAGAGCATTCACTCTTTAACACAGCTCAATTTAATATA
452 CATTCATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATA
* * * *
41851 CT-GGTTCTAATAAAAGCCTAATTACCAACGTATGAA-AAAGGGTAATGATATGGGTTCTCGTAA
517 CTGGGTTCCAATAAAAGCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAA
*
41914 AAGCCTAATTCCAGAGGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
582 AAGCCTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
*
41964 GTTACCGTATGAGTTCCCCTAAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
** * * * *
42029 ATCAAAACTACAGGTGGTGGGGTCCACCTTCCTGCGACGGTTTA-TAGGTAGATTCTCTCTCTAC
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
* *
42093 TACAAACTGAAGCTTTGGTATTTAGTGACAGAGAAAGTTTAATCTGATGTGTCTGATTGTTGGAC
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
42158 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
* *
42223 GAATTAGTACAGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGTGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
*
42288 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATACAACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
* *
42353 TTCAGATAGAGGAAAACTCTCTATTAAAGATAGGATATACGGGGTAAAAGACTCATCGAGTCATT
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
*
42418 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAACTCAGTTTAATATACTGG
456 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
* * * * *
42483 GTTCCAATAAAAGCCAAATTACCGACATAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGA
521 GTTCCAATAAAAGCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAGC
* **
42548 CTAATTCCAGACGTAGGTAATAAGGTTTACAATTTTGTTACTTAGG
586 CTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
* * *
42594 GTTACCGTATAAGTTCCCCTGAAATCCTACTAGGCGTGGACATTGTCACATTCTTCTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
*
42659 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCTCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
* * * *
42724 TATAAACTGAAGCTTTGGTGTTTAGTGAAAGATAAAGTTTAATCTGATGTTTCGGATTGTTGGAC
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
42789 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
*
42854 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTTATTGCTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
* * *
42919 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCGGCCGATTGGATTCTTGGGTAGATTC-T
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGG-A-ATGCAA
* * * * * *** * * * ** ** * *
42983 CTCTCTGCT--A-CA-AACTGAATC-ATTGGTGTTTAGTGACAGA-GAAAGTTTAA-TCTGAT-G
389 CTTTCAGATAGAGGAGAACT--CTCTATTAAAG-ATAG-GATATACG-GCGTAAAAGACTCATCG
* ** * * * * * * *
43040 TGTCTGATT-ATTGGACTTTGAATCCACTGTTAGTTCA-TGGTATACTTTAC-CTCTTGTCAAGT
449 AGTC--ATTCATTTTA-TAT--AT-TAATG-TA--ACACTAG-A-GCATT-CTCTCTT-T-AA--
* * * * ** * *** * * ** *
43102 CACAAGCT-ATTTTGATTTGGAATTAGTACGGCTACAA-CC-AATAACTCTTC-T---AACTACA
498 CAC-AGCTCAGTTTAATAT--ACTGGGTTCCAATAAAAGCCTAATTAC-CGACGTAGGAACCA-A
** ** * * * ** *
43160 GTTTCTTGCACTGATTGCTT-T-G----AGCC--ATCTCGAGTTGGGTTTCTGCTGTCAATAAGG
558 GGGTAATG-A-T-ATGGGTTCTCGTAAAAGCCTAAT-TCCAG--ACG--T-AG--GT-AATAAGG
* * *
43217 TTTTTC-AGCC-GATTGGATTCTT-GG
611 -CTTACAATCCTG-TT--A--CTTAGG
* * *** * ** *** * ** * ***
43241 GAATACAACTTTCAGATAGAGGAGAACTCTCTAATAAAGATAGGATATACGG-CGTATAAGACTC
1 G-TTAC--C-GT---AT-GA-G-TTCCCCTGAAATCCTGCTAGG-CGT--GGACAT-TGTCAC-C
* * *** * * * * *** * * * * **
43305 ATCGAGTCATTCGTTTTAGAT-AATAATGTAACA-CTAGAGCATTCTCTCTTTAACACAGCTCAG
51 TTC--TTC-TT-GAAATGGATCAA-AA-G-AACAGGTGGTGGGGTC-CACCTT--CCCGGGAC-G
* * * * * * * * * *** *
43368 TTAATAATATACTGGGTTAAGGCTTATAATC-CTGTTAATAAAATCCTGCTAGGCGTAGACATTC
105 TT--T--TAT--TAGG-T-A-GATTCT-CTCTCTGCT-A-CAAA--CTG--AAGCTTTGGTGTTT
* ** * * * ** ****** * * * ** * ****** *
43432 ACCTTCTTCTTGA-AATAGATCAA-AAGAACAGGGTGGTGGGGTCCACCTTCCCGGGACGTTTTA
154 A--GT-GAC-AGAGAA-AGTTTAATCTGATGTTTCTGAT-TGTTGGACTTTGAATCCAC-TGTTA
* * * **
43495 -TT-A-GGTAGA--TT-CTCTCTCTG-C---T-ACAA-CTGA---AGCTTTGGTGTT--TA-GTG
212 GTTGATGGTATACTTTAC-CTCT-TGTCAAGTCACAAGCT-ATTTTGATTTGGAATTAGTACG-G
* * * * * * *
43542 ATA-GA--GA-AAGT-TT--AA-TATGATGTTTC-TG-A-TTATTGGACTTTGAATCCA-CT-GT
273 CTACAACCAATAACTCTTCCAACTA-CA-GTTTCTTGCACTGATT-G-CTTTG-AGCCATCTCG-
* * * ** * *
43594 TAGTTGATGGTATACTTTATCT-CTTGTCAAGTCACAAGCTATT---TTGATTTGGAATTAGTAC
332 -AGTTG--GG------TT-TCTGC-TGTCAA-T-A-AGGTTGTTCAGCCGA-TTGG-ATT-CT-T
* ** * ** * * * **
43655 GGCTATAACCAATAACTCTTCCA-ACTATAGTTTCTTGCACTGATTGCT-TT-GAGCCATCTCGA
379 GG-GA-ATGC---AACT-TT-CAGA-TAGAG----GAGAACT--CT-CTATTAAAG--AT-AGGA
**** * * ** ** *
43717 GT-T--GG-GTTTCTG-CTGTCAATAAGGTTGTTCAGCCGATTGGAT-TCTTGGGAATGTAACTT
426 -TATACGGCGTAAAAGAC--TC-AT--CG-AG-TCATTC-ATTTTATATATT---AATGTAA---
* * ** * * ** * *
43776 TCAGATAGAGGAGAACTCTCTATT-A-A-AGAT-AG---GATATAC-GGCG-TAAAAGAATCATC
476 -CA-CTAGAGCA-TTCTCTCT-TTAACACAGCTCAGTTTAATATACTGG-GTTCCAATAA--A-A
** * ** *** ** * * * *
43832 GGGTCATT--C-ATTTTTTATATTAA-TGTAA-CACTA-GAGCATTCTCTCTTTAACACAG-CTA
533 GCCTAATTACCGACGTAGGA-ACCAAGGGTAATGA-TATG-G--GT-TCTC-GTAA-A-AGCCTA
** * * * * ** **
43890 AGTTAATATAC-TGGGTTCAGATTAAAGCTTA-ATTACCGCCGTAGGAACCAAGG
589 A-TT-CCAGACGTAGG-T-A-A-TAAGGCTTACA--A--TCC-T-GTTACTTAGG
* *** * ** * * * * * * * * *
43943 GTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGCCGTAGGTA-ATAG---GC-T-TAC---A
1 GTTACCGTATGAGTTCCCCTGAAATCC---TGCTAGGCGT-GG-ACATTGTCACCTTCTTCTTGA
* ** * * * * * * ***
43999 ATACTGTTACTC-AGGGTTAC-CGT-ATGAGTTCC-CCTGAAATCCTGTTAGG-CGTGGACATT-
61 A-A-TG-GA-TCAAAAG-AACAGGTGGTGGGGTCCACCT----TCCCG---GGACGT-TTTATTA
* * * * ** * ** * *
44058 -GTCGCCTTCT-TCT-TGAAATGGATCAAA-AGAA--TTGGTGGTAGGGTCCACCTTCCCG-GGA
113 GGTAG-ATTCTCTCTCTG--CT--A-CAAACTGAAGCTT--TGGT---GTTTA-GTGACAGAGAA
* * * * ** ** ** **** *
44116 CGTTTTAT-TAAATAGATTCTCT-CTCTACTACAAATTGAAGCTTTGTGTGCTTAG-TGACAGAG
166 AGTTTAATCT-GAT-G-TT-TCTGAT-TGTTGGACTTTGAA---TCCACTG-TTAGTTGA-TG-G
* * * * * ** * * *
44178 -AAAGTTTA-AT-ATG--ATGT-TTATG--ATTGTTGGACTTTGTATCCACTGTTAGTTGATGG-
220 TATACTTTACCTCTTGTCAAGTCACAAGCTATT-TT-GA-TTTGGA---A---TTAG-T-ACGGC
* ** * * * * * ** *
44234 TA-TA-CTTTACCTCTTGTCAAGTCACAAGCTATT-TTG-ATTTGGAATTAGTACGGCTACAACC
274 TACAACCAATAACTCTT-CCAACT-AC-AG-T-TTCTTGCA-CT-G-ATT-G--C--TTTGAGCC
* * *** * * * ** * *
44295 AATAACTCTTCCAACTACAGTTTCT--TG-CACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTC
326 ----A-TC-T-CGAGTTGGGTTTCTGCTGTCAAT-A-AG-GTTG-TTCAGC-CGA-TT-GGATTC
* ** * * *
44357 AGCTGTCAAT--AAGGTTTTCAGCCGATTGGATTCTTGG-GAA-TGCAACT-TTCAGATAGA-AG
377 --TTGGGAATGCAA--CTTTCA---GA-TAGA-----GGAGAACT-C-TCTATT-A-A-AGATAG
* *** * ** *
44416 AGAACTCTCAACTAAAGATATGATATACGACGTAAAAGACTCATCGAGTCATTCGTTTTATATAT
424 -G-A-TAT--AC-GGCG-TA--A-A-A-GAC-TCATCGAGTCAT----TCA----TTTTATATAT
44481 TAATGTAAC-CTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAA
468 TAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAA
* *
44545 GCCTAATTACCGACGTAGGAACCAAGGGTAATGATACGAGTTCTCGTAAAAGCCTAATTCCAGAC
533 GCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAGCCTAATTCCAGAC
*
44610 GTAGGTAATAAGGCTTATAATCCTGTTACTTAGG
598 GTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
* **
44644 GTTACCGTATGAGTTCCCTTGAAATCCTGCTAGGTATGGACATTGTCACCTTCTTCTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
*
44709 ATCAAAAGAACAGGTGGT-GGGTCCACCTTCCCGGGATGTTTTATTAGGTAGATTCTCTCTCTGC
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
* * *
44773 TATAAACTGAAGCTTTGGTGTTTAGTGATAGAGAAAGTTTAATCTGATGTTTTTGATTGTTGGAC
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
*
44838 TTTGAATCCACTGTTAGTTGATGGTATACTTTATCTCTTGTCAAGTCACAAGCTA-TTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
* *
44902 GAATTAGTATGGCTACAACCAATAACTCTTCCAACTATAGTTTCTTGCACTGATTGCTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
* * * **
44967 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAACTGATTGGATTCTTAGGAATAAAACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
* * *
45032 TTCAGATATAGGAGAACTCTCTA-T-AA-ATAGGATATACGTCGT-AAAGGCTCATCGAGTCATT
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
* * *
45093 C-GTTTATATATTAATGT---ACTAGAGCATTCTCTCTTTAACACATCTCAGTTTAATATATTGG
456 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
* * * * *
45154 GTTCCAATGAAAGCTTAATTACCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGT-AAAGC
521 GTTCCAATAAAAGCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAGC
* *
45218 CTAATTCCAGACGTAGGTAATAAGGCTTACAATACTGTTACTCAGG
586 CTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
45264 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
**
45329 ATC-AAAGAACAGGTGGTGGGGTCCACCTTCCCGGGAAATTTTATTAGGTA-ATTCTCTCTCTGC
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
*
45392 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGGAAGTTTAATCTGATGTTTCTGATTGTTGGAC
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
*
45457 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTTTCAAGTCACAAGCTATTTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
45522 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
* * *
45587 ATCTCGAGTTGGGTTTCTACTGTCATTAAGGTTGTTCATCCGATTGGATTCTTGGGAATGCAACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
45652 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGG--ATACGGCGTAAAAGACTCATCGAGTCATT
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
* *
45715 CGTTTTATATATTAATGT-A-ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATGCTGG
456 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
* * * *
45778 GTTCCAATTAAAGCTTAATTACC-ACCGTAAGAACCAAGGGTAAAT-ATATGGGTTATCGTAAAA
521 GTTCCAATAAAAGCCTAATTACCGA-CGTAGGAACCAAGGGT-AATGATATGGGTTCTCGTAAAA
* * *
45841 GCCTAATTCTAG-CTGTAGGTAATAAGGCTTACAATACTGTTACTCAGG
584 GCCTAATTCCAGAC-GTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
* * *
45889 GTTTCCGTATGAGTTCCCTTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTTTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
*
45954 ATC-AAAGAACA---GGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGT
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
*
46015 TACAAACTGAAGCTTTTGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
46080 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
*
46145 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTCTCTTGCACTGATTGCTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
46210 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
* *
46275 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATATGGAGTAAAAGACTCATCGAGTCATT
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
* *
46340 CATTTT-TATATTAA--TAACACCAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATTCTGG
456 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
* * * *
46402 GTTCCAATAAAAGCCTGATTACCGCCGTGGGAACCAAGGGTAATGATATGGGTTCTCCTAAAAGC
521 GTTCCAATAAAAGCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAGC
* * *
46467 CTAAATCCAGACGTAGGTAATAAGACTTACAATCCTGTTCCTTAGG
586 CTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
* * * *
46513 GTTACCGTATGAGTTCCCCTAAAATCCTGCTA-GCGTAGACATTATCACCTTCTTCTTGAACTGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
* *
46577 ATCAAAAGAACAGGTGGTGGGGTCTACCTTCCCGGGACGTTTTATTATGTAGATTCTCTCTCTGC
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
* *
46642 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGTTGTTTCTGATTATTGGAC
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
*
46707 TTTGAATCCACTGTTAGTTGATGGTAGACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
*
46772 GAATTAGTACGGCTACAACCAAT-ACTCTTCCAACTATAGTTTCTTGCACTGATTGCTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
* *
46836 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCGGATTGGATTCTTAGGAATGCAACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
* *
46901 TTCAGATAGAGGAGAACTATCTATTAAAGATAGGATATACGGCATAAAAG-CTCATCGAGTCATT
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
* *
46965 CGTTTTATATATTAATGTAACACAAGAGCATTCTCTCTTT-ACACAGCTCAGTTTAATATACTGG
456 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
* * * * * *
47029 GTTCCAATGAAAGCTTAATTACCGCCGTAGAAACCAAGGGTAATTATATGGGTTATCGT-AAAGC
521 GTTCCAATAAAAGCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAGC
* * *
47093 CTAATTCCAGACGTAGGTAATAAGGCTTATAATACTGTTACTCAGG
586 CTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
* *
47139 GTTACCGTATGAGTTCTCCTGAAATCCTGCTAGGCGTGGACATTGTCACATTCTTCTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
** *
47204 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCC-GGAAATTTTATTAGGTATATTCTCTCTCTGC
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
* * * *
47268 TACAAACTGAAGCTTTGGTGTTCAGTGAAAGAGAAAGTTTAATCTGATATTTCTGATTGTTGGAT
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
*
47333 TTTGAATCCACTGTTAGTTGATGGTATACTCTACCTCTTGTCAAGTCACAAGCTA-TTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
** *
47397 GAATTAGTACAACTACAACCAATAACTCTTCCAACTAGAGTTTCTTGCACTGATTGCTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
* ** *
47462 ATCTCGAGTTGGGTTTCTGTTGTCAATAAGGTTGTTCAGATGATTGGATTCTTGGGAATTCAACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
* *
47527 TTCAGATTGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAAGA-GC-T-GAAGTC-
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGT-AAAAGACTCATCG-AGTCA
* * * ** * **** * * * **
47588 --CA---CA-A-A--CA-G-ATCAGCTAGCCCATT-TAGTGGCCAA-ATACCTGAG-GAAATA-A
454 TTCATTTTATATATTAATGTAACA-CTAGAGCATTCT-CTCTTTAACACAGCTCAGTTTAATATA
* * * * * * * **
47638 CAGAACGGTTATTCAAGGACAACAGCTGGCATTTAGTTA-GGTTC-TATGGTA-C-ATTGTAAAC
517 CTG---GG-T-TCCAA-TA-AA-AGC---C---TAATTACCG-ACGTA-GGAACCAAGGGT-AA-
** * * * * * * * *
47699 AAATAAAT-AGTAATGT-GTAAAGAG-CAAATT--AGGCATATTTGAATGAATTAAGATTCTTTC
564 TGAT--ATGGGT--TCTCGTAAA-AGCCTAATTCCAGACGTA---G-GT-AA-TAAG--GCTTAC
*
47759 -ATCTCTATT-CTACTA--
616 AATC-CTGTTACT--TAGG
* * * ** * * * * * * *
47774 CTTTCTC-TCTGCTTTTCTTCTCTATTTCCAAAT-CTATCTAAGTCAT-TACAATTGCTTTGAGC
1 GTTAC-CGTATG-AGTTC--C-C---CT-GAAATCCT-GCT-AGGCGTGGAC-ATTG---TCA-C
* ** * **** * * *** * *
47836 CATC-TC--GAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGTCGA--TT----GGA----TTC
50 CTTCTTCTTGAAAT-GG-ATCAAAAG--AA-CAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTA
*
47888 TTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGATGTTTAGTGACAGA-AAAGTTTAATC
110 TTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATC
* *
47952 TGATGTGTCTGATTGTTGGACTTTGAATCCACTGTTAGTT-ATGATATACTTTACCTCTTGTCAA
175 TGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAA
*
48016 GTCACAAGCTA-TTTGATTTGGAATTAGTATGGCTACAACCAATAACTCTTCCAACTACAGTTTC
240 GTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTC
* *
48080 TTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGTCGTT
305 TTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGAT
*
48145 TGGATTCTTGGGAATGCAACTTTCATATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCG
370 TGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCG
* * *
48210 TAAAAGACTCATCGAGTCATTCGTTTCATATATTAAAGTAACACTA-AGCATTCTCTCTTTAACA
435 TAAAAGACTCATCGAGTCATTCATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACA
* * ** * *
48274 CAGCTCAGTTAAATATGCTATGTTCCAATAAAAACCTGATGATTACCGCCGTAGGAACCAAGGGT
500 CAGCTCAGTTTAATATACTGGGTTCCAATAAAAGCCT-A--ATTACCGACGTAGGAACCAAGGGT
* * *
48339 AATGATACGGGTTCTCGTAAAAGCCTAATTCTAGAC-TA-GTAATAAGGCTTATAATCCTGTTAC
562 AATGATATGGGTTCTCGTAAAAGCCTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTAC
48402 TTAGG
627 TTAGG
* * *
48407 GTTAGCATATGAGTTCCACTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
* *
48472 ATCAAAAGAACAGGTGGTAGGGTCCACCTTCTCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
* * * *
48537 TACAAACTGAAGCTTTGGTGTTTACTGATATAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAA
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
*
48602 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTTATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
48667 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
* * *
48732 ATCTCGAGTT-GGTTTCTGCTGTCAATAAGGTTGTTCATCCGATTGTATTCTTGGGAATAC-ACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
*
48795 TTCAGAT--A-GAGAACTCTCTATTAAAGATAGGATATACGGCGTAAACGACTCATCG-GTC-TT
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
* * *
48855 C-GTTT-TATATTAATGTAAC-CTA-AGCATTCTCTCTTTAAC-CAGCTCAATTTAATATAAT-G
456 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
* * * ** * * *
48914 GTTCCAGTAAAAGGCTAATTACCGACTTA-GAAAAAAGGGTAATTATAT-GGTTATTGTAAAAGC
521 GTTCCAATAAAAGCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAGC
* *
48977 CTAATTCCATACGTAGGTAATAAGGCTTAC-ATCCTGTCACTTAGG
586 CTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
* * * ** *
49022 GTTACCGTATGAGTTCCTCTGAAATCCTGTTAGGTGTGGACATTGTCATATTCTTCTTGAAATAG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
* * *
49087 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGTGATGTTTTTATTAGGTAGATTATCTCTCT-
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACG-TTTTATTAGGTAGATTCTCTCTCTG
* * *
49151 ATACAAACTGAAGCTTTGGTCTTTAGTGACAGAG--AGTTTAATCTGATGTGTCTGATTGTTGGA
130 CTACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGA
49214 CTTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTT
195 CTTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTT
* *
49279 GGAATTAGTACAGCTACAACCAATAACTCTTCCAACTATAGTTTCTTGCACTGATTGCTTTGAGC
260 GGAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGC
* * *
49344 CGTCACGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATACAAC
325 CATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAAC
* *
49409 TTTCAGATA-TGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGATTCAT
390 TTTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCAT
* *
49473 TCATTTCATATATTAATGT-A-ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATATTG
455 TCATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTG
* * * * *
49536 GATTCCAATAAAATCCAAATTACCGACGTAGGAACCAAGGATAATGATACGGGTTCTCGT-AAAG
520 GGTTCCAATAAAAGCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAG
* * * *
49600 CCAAATTCCATAGGTAGGTAATAAGGCTTAAAATCCTGTTACTTAGG
585 CCTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
* * **
49647 GTTACCATATGAGTTCCCTTG-AATCCTGCTAGGTATGGACATTGTCACCTTCTTCTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
*
49711 ATCAAAAGAACAGGTGGTGGGGTCC-CCTTCCCGGGATGTTTTATTAGGTAGA-T-TCTCTCTGC
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
* *
49773 TATAAACTGAAGCTTTGGTGTTTAGTGATAGAG-AAGTTTAATCTGATGTTT-TGATTGTTGGAC
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
*
49836 TTTGAATCCACTGTTAGTTGAT-GTATACTTTATCTCTTGTCAAGTCACAAGCTATTTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
* *
49900 GAATTAGTATGGCTACAACCAAT-ACTCTTCCAACTATAGTTTCTTGCACTGATTGCTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
* * **
49964 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCA-CTGATTGGATTCTTAGGAATAAAACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
* * *
50028 TTCAGATATAGGAGAACTCTCTATTAAAGATAGGATATACGTCGTAAAAGGCTCATCGAGTCATT
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
* * *
50093 CGTTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACATCTCAGTTTAATATATTGG
456 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
* * * * *
50158 GTTCCAATGAAAGCTTAATTACCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGC
521 GTTCCAATAAAAGCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAGC
* *
50223 CTAATTCCAGACGTAGGTAATAAGGCTTACAATACTGTTACTCAGG
586 CTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
50269 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
**
50334 ATCAAAAG-ACAGGTGGTGGGGTCCACCTTCCCGGGAAATTTTATTAGGTAGATTCTCTCTCTGC
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
50398 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAG-AAGTTTAATCTGATGTTTCTGATTGTTGGAC
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
*
50462 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTTTCAAGTCACAAGCTATTTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
50527 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
* * *
50592 ATCTCGAGTTGGGTTTCTACTGTCATTAAGGTTGTTCATCCGATTGGATTCTTGGGAATGCAACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
50657 TTCAGATAGAGGA-AACTCTCTATTAAAGATAGGATATAC--CGTAAAAG-CTCATCGAGTCATT
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
* *
50718 CGTTTTATAT-TTAATGT-ACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATGCTGG
456 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
* * *
50781 GTTCCAATTAAAG-CTAATTACC-ACCGTAAGAACCAAGGGTAAAT-ATATGGGTTATCGTAAAA
521 GTTCCAATAAAAGCCTAATTACCGA-CGTAGGAACCAAGGGT-AATGATATGGGTTCTCGTAAAA
* * *
50843 GCCTAATTCTAG-CTGTAGGTAATAAGGCTTACAATACTGTTACTCAGG
584 GCCTAATTCCAGAC-GTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
* * *
50891 GTTTCCGTATGAGTTCCCTTGAAATCCTGCTAGGC-TGGACATTGTCACCTTCTTTTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
*
50955 ATCAAAAGAACA---GGTGGGGTCCACCTTCCCGGGACG-TTTATTAGGTAGATTCTCTCTCTGT
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
51016 TACAAACTGAAGCTTT-GTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
51080 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
*
51145 GAATT-GTACGGCTACAACCAATAACTCTTCCAACTACAGTCTCTTGCACTGATTGC-TTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
51208 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
* *
51273 TTCAGATAGAGGAG-ACTCTCTATTAAAGATAGGATATATGGAGTAAAAGACTCATCGAGTCATT
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
*
51337 CATTTTATATATTAATGTAAC-C-AGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATTCTGG
456 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
* * * *
51400 GTTCCAATAAAAGCCTGATTACCGCCGTGGGAACCAAGGGTAATGATA-GGGTTCTCCT-AAAGC
521 GTTCCAATAAAAGCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAGC
* * *
51463 CTAAATCCAGACGTAGGTAATAAGACTTACAATCCTGTTCCTTAGG
586 CTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
* * *
51509 GTTACCGTATGAGTTCCCCT-AAATCCTGCTAGGCGTAGAC-TTATCACCTTCTTCTTGAACTGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
* * *
51572 ATCAAAAGAACATGTGGTGGGGTCTACCTTCCC-GGACGTTTTA-TATGTAGATTCTCTCTCTGC
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
* *
51635 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGTTGTTTCTGA-TATTGGAC
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
*
51699 TTTGAATCCACTGTTAGTTGATGGTAGACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
*
51764 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTATAGTTTCTTGCACTGATTGCTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
*
51829 ATCTCGAGTTGGGTTTCTGC-GTCAATAAGGTTGTTCAG-CG-TTGGATTCTTAGGAATGCAACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
* * *
51891 TTCAGATAGAGGAGAACTATCTA-T-AA-ATAGGATATACGGCATAAAAGGCTCATCGAGTCATT
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
* *
51953 CGTTTTATATATTAATGTAACACAAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
456 CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
* * * * *
52018 GTTCCAATGAAAGCTTAATTACCGCCGTAGAAACCAAGGGTAATTATATGGG-T-TCGTAAAAGC
521 GTTCCAATAAAAGCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAGC
* * *
52081 CTAATTCCAGACGTAGGTAATAAGGCTTA-TATACTGTTACTCAGG
586 CTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
* *
52126 GTTACCGTATGAGTTCTCCTGAAATCCTGCTAGGC-TGGACATTGTCACATTCTTCTTGAAATGG
1 GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
* *
52190 ATCAAAAGAACA-GTGGTGGGGTCCACCTTCCCGGGA-ATTTTATTAGGTATA-T-TCTCTCTGC
66 ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
* * * *
52251 TACAAACTGAAGCTTTGGTGTTCAGTGAAAGAGAAAGTTTAATCTGATATTTCTGATTGTTGGAT
131 TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
*
52316 TTTGAATCCACTGTTAGTTGATGGTATACTCTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
196 TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
** *
52381 GAATTAGTACAACTACAACCAATAACTCTTCCAACTAGAGTTTCTTGCACTGATTGCTTTGAGCC
261 GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
* ** *
52446 ATCTCGAGTTGGGTTTCTGTTGTCAATAAGGTTGTTCAGATGATTGGATTCTTGGGAATTC-ACT
326 ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
*
52510 TTCAGATTGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAA
391 TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAA
52559 AGAGAGCTGA
Statistics
Matches: 10561, Mismatches: 1262, Indels: 1319
0.80 0.10 0.10
Matches are distributed among these distances:
613 166 0.02
614 79 0.01
615 177 0.02
616 269 0.03
617 375 0.04
618 485 0.05
619 566 0.05
620 571 0.05
621 607 0.06
622 339 0.03
623 572 0.05
624 545 0.05
625 586 0.06
626 680 0.06
627 722 0.07
628 305 0.03
629 298 0.03
630 304 0.03
631 923 0.09
632 280 0.03
633 82 0.01
634 33 0.00
635 55 0.01
636 19 0.00
637 7 0.00
638 15 0.00
639 220 0.02
640 73 0.01
641 61 0.01
642 34 0.00
643 32 0.00
644 31 0.00
645 14 0.00
646 10 0.00
647 13 0.00
648 16 0.00
649 3 0.00
650 25 0.00
651 16 0.00
652 9 0.00
653 1 0.00
654 2 0.00
655 3 0.00
656 3 0.00
657 10 0.00
658 1 0.00
659 11 0.00
660 5 0.00
661 9 0.00
662 2 0.00
663 4 0.00
664 7 0.00
665 19 0.00
666 8 0.00
667 19 0.00
668 12 0.00
669 21 0.00
670 19 0.00
671 15 0.00
672 15 0.00
673 7 0.00
674 15 0.00
675 4 0.00
676 12 0.00
677 8 0.00
678 19 0.00
679 30 0.00
680 18 0.00
681 22 0.00
682 28 0.00
683 19 0.00
684 5 0.00
685 28 0.00
686 9 0.00
687 10 0.00
688 16 0.00
689 35 0.00
690 12 0.00
691 13 0.00
692 26 0.00
693 12 0.00
694 11 0.00
695 22 0.00
696 13 0.00
697 27 0.00
698 26 0.00
699 18 0.00
700 17 0.00
701 46 0.00
702 27 0.00
703 36 0.00
704 15 0.00
705 12 0.00
706 19 0.00
707 5 0.00
708 4 0.00
709 11 0.00
710 16 0.00
711 13 0.00
712 7 0.00
713 13 0.00
714 3 0.00
715 13 0.00
716 26 0.00
717 3 0.00
718 4 0.00
719 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (631 bp):
GTTACCGTATGAGTTCCCCTGAAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGG
ATCAAAAGAACAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGC
TACAAACTGAAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAC
TTTGAATCCACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTG
GAATTAGTACGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCC
ATCTCGAGTTGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACT
TTCAGATAGAGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATT
CATTTTATATATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGG
GTTCCAATAAAAGCCTAATTACCGACGTAGGAACCAAGGGTAATGATATGGGTTCTCGTAAAAGC
CTAATTCCAGACGTAGGTAATAAGGCTTACAATCCTGTTACTTAGG
Found at i:47094 original size:626 final size:631
Alignment explanation
Indices: 43408--52558 Score: 13149
Period size: 626 Copynumber: 14.7 Consensus size: 631
43398 CCTGTTAATA
* *
43408 AAATCCTGCTAGGCGTAGACA-T-TCACCTTCTTCTTGAAATAGATCAAAAGAACAGGGTGGTGG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACA-GGTGGTGG
43471 GGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTAC-AACTGAAGCTTTGGTG
65 GGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTG
* * *
43535 TTTAGTGATAGAGAAAGTTTAATATGATGTTTCTGATTATTGGACTTTGAATCCACTGTTAGTTG
130 TTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTG
* *
43600 ATGGTATACTTTATCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTATAACC
195 ATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACC
*
43665 AATAACTCTTCCAACTATAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGC
260 AATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGC
*
43730 TGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGTAACTTTCAGATAGAGGAGAACTCT
325 TGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCT
* * * *
43795 CTATTAAAGATAGGATATACGGCGTAAAAGAATCATCGGGTCATTCATTTTTTATATTAATGTAA
390 CTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAA
* *
43860 CACTAGAGCATTCTCTCTTTAACACAGCTAAG-TTAATATACTGGGTT-CAGATTAAAGCTTAAT
455 CACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCA-ATAAAAGCTTAAT
*
43923 TACCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGCCGTAGGTA
519 TACCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGACGTAGGTA
43988 AT-AGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
584 ATAAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
* * ** *
44035 AAATCCTGTTAGGCGTGGACATTGTCGCCTTCTTCTTGAAATGGATCAAAAGAATTGGTGGTAGG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
** * *
44100 GTCCACCTTCCCGGGACGTTTTATTAAATAGATTCTCTCTCTACTACAAATTGAAGCTTTGTGTG
66 GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTG-GTG
* * * *
44165 CTTAGTGACAGAGAAAGTTTAATATGATGTTTATGATTGTTGGACTTTGTATCCACTGTTAGTTG
130 TTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTG
44230 ATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACC
195 ATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACC
*
44295 AATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCAGC
260 AATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGC
*
44360 TGTCAATAAGGTT-TTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAAGAGAACTCT
325 TGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCT
* * * *
44424 CAACTAAAGATATGATATACGACGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAA
390 CTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAA
*
44489 C-CTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAAGCCTAATT
455 CACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAAGCTTAATT
* * * * *
44553 ACCGACGTAGGAACCAAGGGTAATGATACGAGTTCTCGTAAAAGCCTAATTCCAGACGTAGGTAA
520 ACCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGACGTAGGTAA
* * * *
44618 TAAGGCTTATAATCCTGTTACTTAGGGTTACCGTATGAGTTCCCTTG
585 TAAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
**
44665 AAATCCTGCTAGGTATGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGT-GG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
* *
44729 GTCCACCTTCCCGGGATGTTTTATTAGGTAGATTCTCTCTCTGCTATAAACTGAAGCTTTGGTGT
66 GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
* *
44794 TTAGTGATAGAGAAAGTTTAATCTGATGTTTTTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
131 TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
* *
44859 TGGTATACTTTATCTCTTGTCAAGTCACAAGCTA-TTTGATTTGGAATTAGTATGGCTACAACCA
196 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
*
44923 ATAACTCTTCCAACTATAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
261 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
* * * ** *
44988 GTCAATAAGGTTGTTCAACTGATTGGATTCTTAGGAATAAAACTTTCAGATATAGGAGAACTCTC
326 GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
* *
45053 TA-T-AA-ATAGGATATACGTCGT-AAAGGCTCATCGAGTCATTCG-TTTATATATTAATGT---
391 TATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAAC
* * *
45110 ACTAGAGCATTCTCTCTTTAACACATCTCAGTTTAATATATTGGGTTCCAATGAAAGCTTAATTA
456 ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAAGCTTAATTA
45175 CCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGT-AAAGCCTAATTCCAGACGTAGGTAAT
521 CCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGACGTAGGTAAT
45239 AAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
586 AAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
45285 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATC-AAAGAACAGGTGGTGGG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
**
45349 GTCCACCTTCCCGGGAAATTTTATTAGGTA-ATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
66 GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
*
45413 TTAGTGACAGAGGAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
131 TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
*
45478 TGGTATACTTTACCTCTTTTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
196 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
*
45543 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTACT
261 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
* *
45608 GTCATTAAGGTTGTTCATCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
326 GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
45673 TATTAAAGATAGG--ATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGT-A-
391 TATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAAC
* *
45734 ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATGCTGGGTTCCAATTAAAGCTTAATTA
456 ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAAGCTTAATTA
* * * *
45799 CCACCGTAAGAACCAAGGGTAAATATATGGGTTATCGTAAAAGCCTAATTCTAG-CTGTAGGTAA
521 CCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGAC-GTAGGTAA
* *
45863 TAAGGCTTACAATACTGTTACTCAGGGTTTCCGTATGAGTTCCCTTG
585 TAAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
*
45910 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTTTTGAAATGGATC-AAAGAACA---GGTGGG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
* *
45971 GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGTTACAAACTGAAGCTTTTGTGT
66 GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
46036 TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
131 TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
46101 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
196 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
*
46166 ATAACTCTTCCAACTACAGTCTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
261 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
46231 GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
326 GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
* * *
46296 TATTAAAGATAGGATATATGGAGTAAAAGACTCATCGAGTCATTCATTTT-TATATTAA--TAAC
391 TATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAAC
* * * *
46358 ACCAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATTCTGGGTTCCAATAAAAGCCTGATTA
456 ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAAGCTTAATTA
* * * * *
46423 CCGCCGTGGGAACCAAGGGTAATGATATGGGTTCTCCTAAAAGCCTAAATCCAGACGTAGGTAAT
521 CCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGACGTAGGTAAT
* * * * *
46488 AAGACTTACAATCCTGTTCCTTAGGGTTACCGTATGAGTTCCCCTA
586 AAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
* * *
46534 AAATCCTGCTA-GCGTAGACATTATCACCTTCTTCTTGAACTGGATCAAAAGAACAGGTGGTGGG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
* *
46598 GTCTACCTTCCCGGGACGTTTTATTATGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
66 GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
* *
46663 TTAGTGACAGAGAAAGTTTAATCTGTTGTTTCTGATTATTGGACTTTGAATCCACTGTTAGTTGA
131 TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
*
46728 TGGTAGACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
196 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
*
46793 AT-ACTCTTCCAACTATAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
261 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
* * *
46857 GTCAATAAGGTTGTTCAGCGGATTGGATTCTTAGGAATGCAACTTTCAGATAGAGGAGAACTATC
326 GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
*
46922 TATTAAAGATAGGATATACGGCATAAAAG-CTCATCGAGTCATTCGTTTTATATATTAATGTAAC
391 TATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAAC
* *
46986 ACAAGAGCATTCTCTCTTT-ACACAGCTCAGTTTAATATACTGGGTTCCAATGAAAGCTTAATTA
456 ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAAGCTTAATTA
*
47050 CCGCCGTAGAAACCAAGGGTAATTATATGGGTTATCGT-AAAGCCTAATTCCAGACGTAGGTAAT
521 CCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGACGTAGGTAAT
* *
47114 AAGGCTTATAATACTGTTACTCAGGGTTACCGTATGAGTTCTCCTG
586 AAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
*
47160 AAATCCTGCTAGGCGTGGACATTGTCACATTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
** *
47225 GTCCACCTTCCC-GGAAATTTTATTAGGTATATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
66 GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
* * * *
47289 TCAGTGAAAGAGAAAGTTTAATCTGATATTTCTGATTGTTGGATTTTGAATCCACTGTTAGTTGA
131 TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
* **
47354 TGGTATACTCTACCTCTTGTCAAGTCACAAGCTA-TTTGATTTGGAATTAGTACAACTACAACCA
196 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
* *
47418 ATAACTCTTCCAACTAGAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGTT
261 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
** * *
47483 GTCAATAAGGTTGTTCAGATGATTGGATTCTTGGGAATTCAACTTTCAGATTGAGGAGAACTCTC
326 GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
* * * *
47548 TATTAAAGATAGGATATACGGCGTAAAAAGAGCTGAAGTCCACAAACAGATCAGCTAGCCCATTT
391 TATTAAAGATAGGATATACGGCGT-AAAAGA-CT-CA-T---C---GAG-TCA--T---TCGTTT
* * * * * * * * * **** *
47613 AGTGGCCAAATACCTGAGGAAATAAC-AGAACGGTTAT-TCAAGGACAACAGCTGGCA-TTTAGT
440 --T----ATATA-TTAATGTAA-CACTAGAGC-ATTCTCTCTTTAAC-ACAGCT--CAGTTTA-A
* * * * * * **** * * * *
47675 TAGGTTCTATGG-TACATTGTAAA-C--AAATA-AATAGTAATGTGTA--AAGAGCAAAT-TA-G
492 TA--TACT-GGGTTCCAAT-AAAAGCTTAATTACCGCCGT-A-G-GAACCAAGGGTAATTATATG
** * * * * * *** * ** * * * * **
47731 GCATAT-TTGAATG---AATT-AAGA-TTCTTTCAT--CTCTATTCTACTACT-TTCTCTCTGCT
550 GGTTATCGTAAAAGCCTAATTCCAGACGTAGGTAATAAGGCT-TAC-AATACTGTT-ACTCAGGG
* * *
47787 TTTCTTC-TCT-A-TT-TCC--
612 TTAC--CGTATGAGTTCCCCTG
* * * * * * ** * ****
47803 AAAT-CTATCTAAGTCAT-TACAATTGCTTTGAGCCATC-TC--GAGTTGGGTTTCTGCTGTCAA
1 AAATCCT-GCT-AGGCGTGGAC-ATTG---TCA-CCTTCTTCTTGAAAT-GG-ATCAAAAG--AA
* * *** * *
47863 TAAGGTTGTTCAGTCGA--TT----GGA----TTCTTAGGTAGATTCTCTCTCTGCTACAAACTG
55 -CAGGTGGTGGGGTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTG
* *
47918 AAGCTTTGATGTTTAGTGACAGA-AAAGTTTAATCTGATGTGTCTGATTGTTGGACTTTGAATCC
119 AAGCTTTGGTGTTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCC
*
47982 ACTGTTAGTT-ATGATATACTTTACCTCTTGTCAAGTCACAAGCTA-TTTGATTTGGAATTAGTA
184 ACTGTTAGTTGATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTA
*
48045 TGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGT
249 CGGCTACAACCAATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGT
* * *
48110 TGGGTTTCTGCTGTCAATAAGGTTGTTCAGTCGTTTGGATTCTTGGGAATGCAACTTTCATATAG
314 TGGGTTTCTGCTGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAG
*
48175 AGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTCATA
379 AGGAGAACTCTCTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATA
* * * **
48240 TATTAAAGTAACACTA-AGCATTCTCTCTTTAACACAGCTCAGTTAAATATGCTATGTTCCAATA
444 TATTAATGTAACACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAAT-
* * * * *
48304 AAAACCTGATGATTACCGCCGTAGGAACCAAGGGTAATGATACGGGTTCTCGTAAAAGCCTAATT
508 AAAAGCT--TAATTACCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATT
* * * * * * *
48369 CTAGAC-TA-GTAATAAGGCTTATAATCCTGTTACTTAGGGTTAGCATATGAGTTCCACTG
571 CCAGACGTAGGTAATAAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
*
48428 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTAGG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
*
48493 GTCCACCTTCTCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
66 GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
* * * *
48558 TTACTGATATAGAAAGTTTAATCTGATGTTTCTGATTGTTGGAATTTGAATCCACTGTTAGTTGA
131 TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
*
48623 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTTATTTGGAATTAGTACGGCTACAACCA
196 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
48688 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTT-GGTTTCTGCT
261 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
* * *
48752 GTCAATAAGGTTGTTCATCCGATTGTATTCTTGGGAATAC-ACTTTCAGAT--A-GAGAACTCTC
326 GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
*
48813 TATTAAAGATAGGATATACGGCGTAAACGACTCATCG-GTC-TTCG-TTT-TATATTAATGTAAC
391 TATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAAC
* * *
48874 -CTA-AGCATTCTCTCTTTAAC-CAGCTCAATTTAATATAAT-GGTTCCAGTAAAAGGC-TAATT
456 ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAA-GCTTAATT
* * ** * *
48934 ACCGACTTA-GAAAAAAGGGTAATTATAT-GGTTATTGTAAAAGCCTAATTCCATACGTAGGTAA
520 ACCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGACGTAGGTAA
* * * *
48997 TAAGGCTTAC-ATCCTGTCACTTAGGGTTACCGTATGAGTTCCTCTG
585 TAAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
* * ** *
49043 AAATCCTGTTAGGTGTGGACATTGTCATATTCTTCTTGAAATAGATCAAAAGAACAGGTGGTGGG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
* * * * *
49108 GTCCACCTTCCCGTGATGTTTTTATTAGGTAGATTATCTCTCT-ATACAAACTGAAGCTTTGGTC
66 GTCCACCTTCCCGGGACG-TTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTG
*
49172 TTTAGTGACAGAG--AGTTTAATCTGATGTGTCTGATTGTTGGACTTTGAATCCACTGTTAGTTG
130 TTTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTG
*
49235 ATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACAGCTACAACC
195 ATGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACC
* * *
49300 AATAACTCTTCCAACTATAGTTTCTTGCACTGATTGCTTTGAGCCGTCACGAGTTGGGTTTCTGC
260 AATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGC
* *
49365 TGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATACAACTTTCAGATA-TGGAGAACTCT
325 TGTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCT
* * *
49429 CTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGATTCATTCATTTCATATATTAATGT-A
390 CTATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAA
* * * **
49493 -ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATATTGGATTCCAATAAAATCCAAATT
455 CACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAAGCTTAATT
* * * * * * * *
49557 ACCGACGTAGGAACCAAGGATAATGATACGGGTTCTCGT-AAAGCCAAATTCCATAGGTAGGTAA
520 ACCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGACGTAGGTAA
* * * * *
49621 TAAGGCTTAAAATCCTGTTACTTAGGGTTACCATATGAGTTCCCTTG
585 TAAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
**
49668 -AATCCTGCTAGGTATGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
* *
49732 GTCC-CCTTCCCGGGATGTTTTATTAGGTAGA-T-TCTCTCTGCTATAAACTGAAGCTTTGGTGT
66 GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
*
49794 TTAGTGATAGAG-AAGTTTAATCTGATGTTT-TGATTGTTGGACTTTGAATCCACTGTTAGTTGA
131 TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
* *
49857 T-GTATACTTTATCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTATGGCTACAACCA
196 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
*
49921 AT-ACTCTTCCAACTATAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
261 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
* * ** *
49985 GTCAATAAGGTTGTTCA-CTGATTGGATTCTTAGGAATAAAACTTTCAGATATAGGAGAACTCTC
326 GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
* *
50049 TATTAAAGATAGGATATACGTCGTAAAAGGCTCATCGAGTCATTCGTTTTATATATTAATGTAAC
391 TATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAAC
* * *
50114 ACTAGAGCATTCTCTCTTTAACACATCTCAGTTTAATATATTGGGTTCCAATGAAAGCTTAATTA
456 ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAAGCTTAATTA
50179 CCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGACGTAGGTAAT
521 CCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGACGTAGGTAAT
50244 AAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
586 AAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
50290 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAG-ACAGGTGGTGGG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
**
50354 GTCCACCTTCCCGGGAAATTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
66 GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
50419 TTAGTGACAGAG-AAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
131 TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
*
50483 TGGTATACTTTACCTCTTTTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
196 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
*
50548 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTACT
261 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
* *
50613 GTCATTAAGGTTGTTCATCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGA-AACTCTC
326 GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
50677 TATTAAAGATAGGATATAC--CGTAAAAG-CTCATCGAGTCATTCGTTTTATAT-TTAATGT-AC
391 TATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAAC
* *
50737 ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATGCTGGGTTCCAATTAAAGC-TAATTA
456 ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAAGCTTAATTA
* * * *
50801 CCACCGTAAGAACCAAGGGTAAATATATGGGTTATCGTAAAAGCCTAATTCTAG-CTGTAGGTAA
521 CCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGAC-GTAGGTAA
* *
50865 TAAGGCTTACAATACTGTTACTCAGGGTTTCCGTATGAGTTCCCTTG
585 TAAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
*
50912 AAATCCTGCTAGGC-TGGACATTGTCACCTTCTTTTTGAAATGGATCAAAAGAACA---GGTGGG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
*
50973 GTCCACCTTCCCGGGACG-TTTATTAGGTAGATTCTCTCTCTGTTACAAACTGAAGCTTT-GTGT
66 GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
51036 TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
131 TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
51101 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATT-GTACGGCTACAACCA
196 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
*
51165 ATAACTCTTCCAACTACAGTCTCTTGCACTGATTGC-TTGAGCCATCTCGAGTTGGGTTTCTGCT
261 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
51229 GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAG-ACTCTC
326 GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
* * *
51293 TATTAAAGATAGGATATATGGAGTAAAAGACTCATCGAGTCATTCATTTTATATATTAATGTAAC
391 TATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAAC
* * *
51358 -C-AGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATTCTGGGTTCCAATAAAAGCCTGATTA
456 ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAAGCTTAATTA
* * * * *
51421 CCGCCGTGGGAACCAAGGGTAATGATA-GGGTTCTCCT-AAAGCCTAAATCCAGACGTAGGTAAT
521 CCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGACGTAGGTAAT
* * * *
51484 AAGACTTACAATCCTGTTCCTTAGGGTTACCGTATGAGTTCCCCT-
586 AAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
* * * *
51529 AAATCCTGCTAGGCGTAGAC-TTATCACCTTCTTCTTGAACTGGATCAAAAGAACATGTGGTGGG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
* *
51593 GTCTACCTTCCC-GGACGTTTTA-TATGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
66 GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
* *
51656 TTAGTGACAGAGAAAGTTTAATCTGTTGTTTCTGA-TATTGGACTTTGAATCCACTGTTAGTTGA
131 TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
*
51720 TGGTAGACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
196 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
*
51785 ATAACTCTTCCAACTATAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGC-
261 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
* *
51849 GTCAATAAGGTTGTTCAG-CG-TTGGATTCTTAGGAATGCAACTTTCAGATAGAGGAGAACTATC
326 GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
* *
51912 TA-T-AA-ATAGGATATACGGCATAAAAGGCTCATCGAGTCATTCGTTTTATATATTAATGTAAC
391 TATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAAC
* *
51974 ACAAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATGAAAGCTTAATTA
456 ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAAGCTTAATTA
*
52039 CCGCCGTAGAAACCAAGGGTAATTATATGGG-T-TCGTAAAAGCCTAATTCCAGACGTAGGTAAT
521 CCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGACGTAGGTAAT
* *
52102 AAGGCTTA-TATACTGTTACTCAGGGTTACCGTATGAGTTCTCCTG
586 AAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
*
52147 AAATCCTGCTAGGC-TGGACATTGTCACATTCTTCTTGAAATGGATCAAAAGAACA-GTGGTGGG
1 AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
* *
52210 GTCCACCTTCCCGGGA-ATTTTATTAGGTATA-T-TCTCTCTGCTACAAACTGAAGCTTTGGTGT
66 GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
* * * *
52272 TCAGTGAAAGAGAAAGTTTAATCTGATATTTCTGATTGTTGGATTTTGAATCCACTGTTAGTTGA
131 TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
* **
52337 TGGTATACTCTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACAACTACAACCA
196 TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
* *
52402 ATAACTCTTCCAACTAGAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGTT
261 ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
** * *
52467 GTCAATAAGGTTGTTCAGATGATTGGATTCTTGGGAATTC-ACTTTCAGATTGAGGAGAACTCTC
326 GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
52531 TATTAAAGATAGGATATACGGCGTAAAA
391 TATTAAAGATAGGATATACGGCGTAAAA
52559 AGAGAGCTGA
Statistics
Matches: 7667, Mismatches: 651, Indels: 417
0.88 0.07 0.05
Matches are distributed among these distances:
609 1 0.00
610 10 0.00
611 1 0.00
612 4 0.00
613 168 0.02
614 81 0.01
615 180 0.02
616 276 0.04
617 382 0.05
618 487 0.06
619 559 0.07
620 572 0.07
621 399 0.05
622 354 0.05
623 543 0.07
624 429 0.06
625 349 0.05
626 605 0.08
627 522 0.07
628 403 0.05
629 387 0.05
630 381 0.05
631 83 0.01
632 1 0.00
634 1 0.00
635 1 0.00
636 1 0.00
637 4 0.00
638 9 0.00
639 206 0.03
640 49 0.01
641 51 0.01
642 2 0.00
643 12 0.00
644 8 0.00
645 12 0.00
646 7 0.00
647 24 0.00
648 10 0.00
649 11 0.00
650 21 0.00
651 8 0.00
652 14 0.00
653 8 0.00
654 16 0.00
655 1 0.00
656 9 0.00
657 5 0.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (631 bp):
AAATCCTGCTAGGCGTGGACATTGTCACCTTCTTCTTGAAATGGATCAAAAGAACAGGTGGTGGG
GTCCACCTTCCCGGGACGTTTTATTAGGTAGATTCTCTCTCTGCTACAAACTGAAGCTTTGGTGT
TTAGTGACAGAGAAAGTTTAATCTGATGTTTCTGATTGTTGGACTTTGAATCCACTGTTAGTTGA
TGGTATACTTTACCTCTTGTCAAGTCACAAGCTATTTTGATTTGGAATTAGTACGGCTACAACCA
ATAACTCTTCCAACTACAGTTTCTTGCACTGATTGCTTTGAGCCATCTCGAGTTGGGTTTCTGCT
GTCAATAAGGTTGTTCAGCCGATTGGATTCTTGGGAATGCAACTTTCAGATAGAGGAGAACTCTC
TATTAAAGATAGGATATACGGCGTAAAAGACTCATCGAGTCATTCGTTTTATATATTAATGTAAC
ACTAGAGCATTCTCTCTTTAACACAGCTCAGTTTAATATACTGGGTTCCAATAAAAGCTTAATTA
CCGCCGTAGGAACCAAGGGTAATTATATGGGTTATCGTAAAAGCCTAATTCCAGACGTAGGTAAT
AAGGCTTACAATACTGTTACTCAGGGTTACCGTATGAGTTCCCCTG
Done.