Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003910.1 Hibiscus syriacus cultivar Beakdansim tig00008458_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110940

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1033--1507
112
4.3
112
89
2
680
25
18
22
32
1.97
13234--13315
23
3.6
23
91
0
137
28
25
28
18
1.98
13234--13325
46
2.0
46
91
0
148
31
22
25
20
1.98
16133--16180
20
2.4
20
100
0
96
14
25
0
60
1.34
18260--18303
23
1.9
23
85
0
61
31
25
25
18
1.97
19911--19955
21
2.1
21
83
0
54
13
24
31
31
1.93
27415--27463
20
2.5
20
79
0
62
36
8
6
48
1.58
27551--27592
19
2.2
19
83
8
50
47
0
0
52
1.00
27548--27592
10
4.7
10
76
17
51
46
0
0
53
1.00
29734--29777
21
2.1
21
91
4
72
34
11
4
50
1.59
40165--40202
2
19.5
2
94
5
69
50
0
0
50
1.00
49620--49658
17
2.4
17
95
4
71
51
5
0
43
1.24
53850--53884
16
2.3
15
90
9
54
25
0
8
65
1.21
57816--57842
11
2.5
11
100
0
54
29
7
0
62
1.22
58157--58209
3
17.7
3
88
0
79
33
35
1
28
1.68
60406--60451
22
2.1
22
100
0
92
23
0
50
26
1.50
60411--60463
22
2.4
22
90
0
79
26
0
47
26
1.53
61174--61217
15
2.8
16
79
6
54
61
0
0
38
0.96
61180--61217
15
2.5
15
91
4
58
60
0
0
39
0.97
61722--61769
25
1.9
26
83
8
64
52
0
2
45
1.12
61749--61802
19
2.8
18
80
8
54
68
1
0
29
1.00
66287--66344
2
29.5
2
96
3
109
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66366--66498
40
3.5
36
85
12
169
36
12
15
35
1.85
66374--66491
40
3.0
40
91
1
175
38
11
16
34
1.84
75336--75412
38
2.0
38
100
0
154
48
15
15
20
1.81
81984--82011
2
14.0
2
100
0
56
50
0
0
50
1.00
82349--82414
14
5.0
14
82
14
86
9
9
25
56
1.60
82365--82433
24
2.9
24
86
4
86
14
10
17
57
1.63
83158--83224
16
4.3
16
92
3
102
10
10
19
59
1.58
83156--83216
32
1.9
32
96
0
113
8
13
22
55
1.64
83286--83318
16
2.1
16
100
0
66
6
12
24
57
1.57
88721--88754
15
2.3
15
100
0
68
14
5
11
67
1.39
88728--88761
15
2.3
15
89
0
50
17
5
11
64
1.45
97048--97098
9
6.2
8
76
19
52
13
0
27
58
1.36
97050--97093
17
2.6
17
85
7
63
13
0
29
56
1.38
103997--104085
3
29.7
3
100
0
178
0
32
0
67
0.91
105961--106009
22
2.3
20
76
10
53
71
0
0
28
0.86
108687--108728
22
1.9
22
85
9
59
42
2
4
50
1.36
110660--110937
3
95.0
3
88
10
425
0
34
0
65
0.93

Tables:   1

The End!