genome.fa.s3911.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003911.1 Hibiscus syriacus cultivar Beakdansim tig00008460_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121441

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7766--7813	19	2.6	18	77	12	53	77	0	20	2	0.88
8524--9293	105	7.4	105	93	1	1246	33	24	17	24	1.96
9796--9835	8	5.1	8	88	11	57	25	0	0	75	0.81
9796--9835	15	2.5	17	84	15	59	25	0	0	75	0.81
11181--11223	3	14.3	3	81	18	54	34	2	0	62	1.08
11182--11231	15	3.3	15	94	5	84	38	2	0	60	1.09
11181--11229	18	2.8	18	93	3	82	36	2	0	61	1.08
11507--11542	19	1.9	19	88	5	56	13	11	2	72	1.23
13058--13133	37	2.1	36	85	2	98	26	22	18	32	1.97
14364--14505	35	4.0	35	87	1	212	34	20	25	19	1.96
14359--14503	71	2.0	71	92	2	238	36	20	24	18	1.95
14754--14779	12	2.2	12	100	0	52	23	19	26	30	1.98
15543--15573	9	3.4	9	95	0	53	35	19	32	12	1.90
15835--15974	36	3.9	35	85	4	183	35	19	25	20	1.96
28323--28393	31	2.3	31	87	2	108	33	23	2	39	1.70
35167--35237	31	2.3	31	92	2	117	35	25	1	38	1.65
35641--35683	21	2.0	21	90	0	68	16	23	27	32	1.96
44132--44208	21	3.6	21	89	1	109	29	22	24	23	1.99
47246--47287	19	2.2	19	87	8	59	76	2	4	16	1.07
47351--47401	25	2.2	24	83	16	65	66	0	9	23	1.21
47496--47542	14	3.4	14	79	8	51	61	0	2	36	1.08
47710--47777	28	2.4	28	76	9	68	64	1	4	29	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47680--47861	85	2.2	79	79	13	183	63	2	6	28	1.30
48296--48336	19	2.3	18	87	8	57	26	29	17	26	1.97
48237--48446	65	3.2	63	83	7	226	30	23	17	28	1.97
54230--54285	22	2.7	21	83	10	62	30	23	17	28	1.97
55768--55811	21	2.1	21	86	0	61	9	36	15	38	1.80
56831--56871	19	2.3	18	87	8	57	26	29	17	26	1.97
56772--56981	65	3.2	63	83	7	226	30	23	17	28	1.97
58049--58134	38	2.3	38	83	2	102	32	9	15	43	1.78
60537--60588	21	2.5	21	81	3	61	38	19	25	17	1.93
60577--60691	20	5.7	20	75	9	99	33	23	18	24	1.96
61165--61223	20	3.0	20	87	0	73	16	18	22	42	1.89
61360--61414	25	2.2	24	78	15	58	20	9	18	52	1.71
62542--62586	18	2.5	18	88	0	72	26	44	15	13	1.83
62969--63011	12	3.2	13	83	16	52	9	0	18	72	1.11
63125--63192	20	3.5	19	84	6	73	16	23	22	38	1.93
63137--63192	20	2.8	19	86	7	76	16	25	23	35	1.94
65061--65096	14	2.6	14	90	0	54	30	0	22	47	1.52
65267--65342	20	3.8	20	72	6	73	17	19	21	42	1.90
65255--65358	40	2.9	34	76	15	109	15	22	22	40	1.91
65630--65681	20	2.5	21	81	3	61	21	21	17	40	1.91
66460--66519	24	2.5	24	80	0	75	26	16	18	38	1.92
66659--66725	21	3.2	21	68	4	55	19	20	35	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66659--66865	42	4.9	42	77	2	184	24	18	35	21	1.95
66689--66864	84	2.1	84	96	0	325	25	17	36	21	1.94
67083--67267	91	2.0	90	91	6	300	47	18	12	21	1.82
68953--69093	19	7.8	19	70	17	95	43	20	24	12	1.86
68978--69076	33	3.0	33	87	1	144	39	23	26	11	1.88
69106--69160	19	2.8	19	86	2	83	10	18	23	47	1.80
69670--69722	20	2.7	20	87	0	79	28	20	26	24	1.99
69835--69875	21	2.0	21	85	0	55	34	31	17	17	1.93
77549--77608	31	1.9	31	100	0	120	38	16	13	31	1.87
80364--80435	36	2.0	36	94	0	126	47	16	16	19	1.83
92784--92818	2	17.5	2	100	0	70	48	0	0	51	1.00
102312--102353	21	2.0	21	95	0	75	26	28	21	23	1.99
102390--102427	20	1.9	20	100	0	76	15	28	42	13	1.85
102455--102532	20	4.2	20	79	15	94	14	28	37	20	1.91
102477--102506	15	2.0	15	100	0	60	13	26	33	26	1.93
102457--102526	35	2.0	35	91	0	113	15	28	34	21	1.94
102838--102884	22	2.1	22	96	0	85	34	2	8	55	1.42
103959--104006	19	2.5	20	82	3	62	29	12	6	52	1.63
104858--104927	34	2.1	32	84	5	86	22	30	14	32	1.94
105211--105252	21	2.0	21	95	0	75	26	28	21	23	1.99
105289--105350	20	3.1	20	100	0	124	14	29	41	14	1.85
105376--105455	21	4.1	21	76	18	91	12	27	40	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105399--105428	15	2.0	15	100	0	60	13	26	33	26	1.93
105378--105449	36	2.0	36	91	0	117	13	27	37	20	1.91
109164--109199	15	2.3	16	90	4	56	5	0	19	75	1.00
111849--111900	15	3.2	17	72	22	58	38	19	0	42	1.51
119607--119652	10	4.6	10	77	17	51	82	0	6	10	0.83
119594--119656	13	4.5	13	73	24	56	84	0	4	11	0.77

Tables:   1

The End!