genome.fa.s3912.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003912.1 Hibiscus syriacus cultivar Beakdansim tig00008461_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69281

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1347--2541	594	2.0	604	92	3	2028	36	12	13	36	1.84
4271--4389	31	4.0	31	86	11	169	38	22	18	20	1.93
5966--6046	24	3.4	24	98	0	153	30	17	28	23	1.97
13293--13395	21	5.0	21	69	4	75	38	18	18	24	1.93
13330--13484	20	7.7	20	67	13	84	41	20	16	21	1.90
13293--13504	41	5.2	41	84	4	241	39	21	16	22	1.92
13353--13525	20	8.6	20	76	4	143	38	23	17	20	1.93
13319--13525	81	2.6	80	82	3	238	38	22	17	21	1.93
13618--13743	20	6.3	20	83	1	139	38	18	18	25	1.93
14604--14657	24	2.2	24	93	0	90	20	18	20	40	1.91
17095--17183	20	4.4	20	81	2	108	35	22	21	20	1.96
17105--17181	40	1.9	41	91	2	129	37	19	20	22	1.94
17188--17273	19	4.7	19	78	16	101	45	19	20	13	1.85
17155--17273	52	2.2	53	86	2	168	42	20	22	14	1.88
17439--17475	14	2.6	14	86	0	56	48	21	0	29	1.50
19419--19505	20	4.3	20	88	0	120	37	20	19	21	1.94
19550--19625	14	5.1	14	71	20	55	10	19	22	47	1.80
19568--19641	33	2.3	31	86	9	96	12	21	21	44	1.84
19576--19641	31	2.1	32	88	5	98	12	22	19	45	1.83
19580--19641	14	3.7	17	79	16	67	11	22	20	45	1.83
19729--20108	94	4.1	94	93	1	620	47	18	12	22	1.81
21806--21861	20	2.8	20	75	20	62	41	19	23	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21797--21947	33	4.3	37	83	9	130	45	19	22	13	1.85
21846--21901	14	3.6	14	76	21	58	44	23	23	8	1.81
21846--21947	33	3.1	33	94	0	177	46	20	21	11	1.83
21952--22044	33	2.8	33	88	1	123	11	17	24	46	1.81
22604--22776	20	8.6	20	77	5	177	20	17	24	36	1.94
22606--22776	40	4.2	40	89	1	243	20	17	24	37	1.94
22604--22837	101	2.3	100	80	8	235	20	17	23	38	1.93
22611--22818	81	2.6	80	84	4	231	20	17	24	37	1.94
22603--22837	20	11.6	20	72	12	140	20	17	23	38	1.93
54709--54821	60	1.9	60	81	3	138	30	23	6	39	1.79
60403--60432	3	10.0	3	100	0	60	33	0	0	66	0.92
60961--61039	29	2.6	31	78	6	90	45	8	6	39	1.61
61054--61105	23	2.3	22	93	6	95	38	7	15	38	1.76

Tables:   1

The End!