Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01003914.1 Hibiscus syriacus cultivar Beakdansim tig00008465_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 254784
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


File 2 of 2

Found at i:251196 original size:12 final size:12

Alignment explanation


    Indices: 251179--251203  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

     251169 TGAAGCCTTT

                        
     251179 AAACCGAACCGA
          1 AAACCGAACCGA

                        
     251191 AAACCGAACCGA
          1 AAACCGAACCGA

             
     251203 A
          1 A

     251204 CCGTTTTACT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.52, C:0.32, G:0.16, T:0.00


Consensus pattern (12 bp):   
AAACCGAACCGA

Done.