genome.fa.s3915.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003915.1 Hibiscus syriacus cultivar Beakdansim tig00008466_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104029

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10--54	20	2.5	17	85	10	54	31	13	6	48	1.68
1360--1419	20	3.3	19	71	20	65	16	26	40	16	1.90
1361--1431	35	2.0	36	94	2	126	16	28	35	19	1.94
1625--1663	19	2.1	19	90	9	62	53	7	0	38	1.30
6521--6554	17	2.1	16	88	5	50	58	5	20	14	1.57
13036--13092	26	2.1	27	83	3	71	52	3	1	42	1.28
15191--15229	14	2.6	15	84	12	53	46	0	0	53	1.00
23700--23729	15	1.9	16	93	6	53	16	3	26	53	1.59
28062--28131	24	2.9	24	100	0	140	25	17	11	45	1.81
30670--30714	2	22.5	2	100	0	90	51	0	0	48	1.00
30626--30732	20	5.5	19	73	15	51	47	0	7	43	1.37
30993--31108	57	2.0	57	98	0	223	35	17	15	31	1.91
31566--31628	33	1.9	33	87	6	92	41	14	20	23	1.89
36204--36232	15	1.9	15	100	0	58	41	31	0	27	1.56
38318--38355	18	2.1	18	95	0	67	15	0	52	31	1.43
44486--44531	20	2.3	20	100	0	92	45	17	15	21	1.85
48544--48659	60	1.9	62	85	3	164	37	14	12	36	1.84
50496--50540	3	16.0	3	86	13	69	66	0	0	33	0.92
63614--63752	21	6.8	20	72	8	82	36	25	17	20	1.94
63719--63873	40	3.8	40	82	4	186	37	26	18	18	1.93
63719--63872	20	7.7	20	80	7	168	37	26	18	18	1.93
64251--64321	33	2.2	33	92	0	115	11	22	18	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64400--64477	41	1.9	41	97	0	147	44	16	25	12	1.83
64401--64476	21	3.7	21	83	3	109	46	17	25	11	1.82
64517--64605	14	5.7	14	71	21	70	10	23	22	43	1.83
64500--64613	33	3.5	33	95	2	212	10	22	20	46	1.81
66309--66962	93	7.1	93	99	0	1276	22	12	19	46	1.83
67009--67137	19	7.3	19	75	17	125	45	28	17	8	1.77
67045--67137	33	2.8	32	91	4	150	46	27	18	7	1.76
67009--67137	52	2.5	52	74	14	140	45	28	17	8	1.77
67133--67267	19	7.6	19	75	16	128	11	19	23	45	1.82
67155--67211	14	3.7	14	77	20	60	10	21	22	45	1.82
67138--67230	33	2.8	33	95	0	168	10	20	21	47	1.80
69188--69223	14	2.6	14	95	0	63	33	0	22	44	1.53
69330--69427	19	5.4	19	84	13	143	45	17	22	14	1.84
69330--69446	53	2.2	53	96	1	218	43	17	24	13	1.86
69436--69586	19	8.7	19	72	21	143	15	21	18	45	1.86
69436--69555	52	2.3	52	95	1	213	15	22	17	45	1.85
69493--69600	33	3.2	33	87	7	173	12	21	19	46	1.83
71829--71853	12	2.1	12	100	0	50	0	28	0	72	0.86
72028--72074	24	2.0	24	87	8	69	38	21	14	25	1.92
72756--73025	20	13.5	20	87	1	290	20	17	25	37	1.94
72992--73090	21	4.8	20	75	6	81	21	18	22	38	1.93
72992--73090	42	2.4	43	77	11	100	21	18	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73999--74025	14	1.9	14	100	0	54	44	25	14	14	1.84
74323--74684	188	1.9	187	80	2	422	35	15	8	40	1.79
75315--75984	231	2.9	230	81	4	767	35	17	8	37	1.81
75342--75969	77	8.2	77	81	3	674	34	17	9	38	1.82
77344--77457	20	5.7	20	87	4	158	32	21	27	18	1.97
77335--77457	41	3.0	41	88	5	162	30	23	26	18	1.98
77478--77598	42	2.9	43	80	9	151	24	21	33	20	1.97
77479--77598	21	5.7	21	79	8	120	25	21	32	20	1.98
77604--77796	80	2.3	83	89	6	286	33	23	17	26	1.96
78540--78776	36	6.5	37	82	11	244	46	3	5	44	1.43
78577--78776	36	5.4	37	84	8	246	46	3	5	45	1.41
78713--78767	28	1.9	29	88	3	85	47	3	5	43	1.44
78757--78831	2	38.5	2	79	15	68	50	0	2	46	1.15
78685--78868	93	2.0	90	92	3	305	47	1	4	46	1.32
78771--78966	39	4.9	40	78	15	194	45	1	5	47	1.35
78771--78966	79	2.5	79	87	9	274	45	1	5	47	1.35
78773--78989	38	5.5	38	72	13	145	44	1	5	48	1.34
78972--79003	12	2.7	12	95	0	55	31	0	6	62	1.20
78995--79044	12	4.2	12	80	10	59	26	0	2	72	0.96
81700--81727	12	2.3	12	100	0	56	39	7	0	53	1.28
91950--92052	9	11.2	9	68	19	61	46	2	1	48	1.28
92006--92080	20	3.6	21	80	5	71	48	2	4	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92204--92237	13	2.6	13	85	0	50	52	5	0	41	1.25
92202--92277	18	4.6	18	73	20	67	46	5	2	46	1.39
92270--92318	13	3.3	15	80	16	57	44	6	8	40	1.59
92287--92455	77	2.1	81	87	6	240	47	1	7	43	1.41
92287--92397	15	7.3	15	70	11	55	48	2	6	42	1.42
92309--92485	79	2.3	78	81	7	191	48	2	6	42	1.44
92563--92632	7	10.0	7	71	4	52	42	25	1	30	1.64
92801--92900	22	4.7	21	75	16	73	37	6	9	48	1.60
92861--92909	22	2.1	22	88	7	71	36	2	8	53	1.43
92882--93093	15	13.9	15	67	18	82	43	3	3	49	1.37
92840--93019	88	2.0	87	83	7	204	41	5	5	48	1.46
92962--93022	31	2.0	31	90	6	97	40	4	3	50	1.40
93042--93110	6	12.3	6	71	22	53	46	0	1	52	1.09
93008--93088	31	2.6	30	80	18	85	48	1	1	49	1.17
93061--93113	15	4.0	14	74	20	60	43	0	0	56	0.99
93008--93135	63	2.0	63	82	8	154	47	0	0	50	1.12
93068--93135	24	2.8	25	84	6	95	47	0	0	52	1.00
93744--93778	18	2.1	16	89	10	52	57	2	0	40	1.14
93773--93899	48	2.6	49	83	6	159	46	4	4	44	1.45
94294--94386	46	2.0	46	91	0	150	35	18	21	24	1.95
98376--98426	19	2.7	19	85	8	70	25	17	33	23	1.96
98270--98476	65	3.2	64	80	14	230	27	17	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101270--101330	29	2.1	29	100	0	122	36	6	9	47	1.63

Tables:   1

The End!