Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003919.1 Hibiscus syriacus cultivar Beakdansim tig00008472_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85083

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1664--1710
24
2.0
24
86
0
67
53
14
6
25
1.65
1903--1944
16
2.6
17
77
11
52
40
14
11
33
1.82
8876--8906
3
10.3
3
92
0
53
0
67
3
29
1.06
12228--12292
27
2.4
27
86
0
103
26
41
21
10
1.86
16368--16477
32
3.4
32
78
0
103
35
14
22
27
1.93
19523--19572
20
2.5
20
84
9
59
52
4
12
32
1.57
23184--23212
2
14.5
2
100
0
58
51
0
0
48
1.00
24914--24967
23
2.4
22
84
6
63
20
12
35
31
1.90
24994--25073
3
27.3
3
82
5
101
61
1
1
36
1.12
29229--29333
37
2.8
37
80
5
122
40
13
14
32
1.84
30014--30054
11
3.6
11
87
6
55
24
4
4
65
1.32
32398--32433
18
2.0
19
89
10
58
52
11
5
30
1.59
32233--32792
198
2.8
197
84
3
685
48
10
5
36
1.59
32656--32799
70
2.1
69
79
10
150
52
9
4
34
1.54
32898--32940
19
2.2
19
83
8
50
37
4
11
46
1.61
48419--48495
3
26.7
3
83
12
99
68
0
28
2
1.02
48425--48493
19
3.8
19
85
14
101
69
0
27
2
1.02
48645--48677
2
16.5
2
100
0
66
48
0
0
51
1.00
48679--48725
20
2.3
21
85
3
60
55
0
2
42
1.12
49513--49569
22
2.7
21
75
20
55
71
1
8
17
1.19
49916--49944
2
14.5
2
100
0
58
51
0
0
48
1.00
50139--50193
2
27.5
2
100
0
110
50
0
0
49
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50202--50242
11
3.6
11
87
6
55
65
4
4
24
1.32
50325--50369
12
3.7
12
81
3
54
66
0
4
28
1.11
50934--51030
37
2.6
37
83
0
122
30
12
15
41
1.84
51260--51310
22
2.3
22
93
0
84
1
35
15
47
1.57
51780--53260
106
14.0
106
91
1
2199
23
17
24
34
1.96
54067--54143
22
3.5
22
94
0
136
20
14
27
37
1.91
54749--54828
21
3.6
21
71
21
65
3
13
7
75
1.16
54753--54834
16
5.3
15
72
17
62
3
13
8
74
1.18
54751--54831
22
3.6
22
76
14
85
3
12
8
75
1.16
58195--58232
19
2.0
20
89
5
60
68
0
23
7
1.16
59359--59431
9
7.8
9
75
15
51
78
1
4
16
0.98
59742--59770
2
14.5
2
100
0
58
51
0
0
48
1.00
59865--59896
15
2.1
15
94
0
55
12
9
0
78
0.97
59866--59919
21
2.6
20
83
13
65
14
5
3
75
1.12
59926--59965
9
4.3
10
84
9
50
22
0
2
75
0.93
59864--59967
12
7.9
12
68
20
57
18
4
2
74
1.13
70701--70904
110
1.9
110
88
2
311
35
23
18
22
1.95
72309--72342
3
11.3
3
100
0
68
32
0
0
67
0.91
72340--72374
2
17.5
2
100
0
70
48
0
0
51
1.00
72445--72518
31
2.4
30
82
12
89
33
2
1
62
1.18
72401--72516
39
3.0
39
71
13
96
32
5
1
60
1.29
72526--72557
15
2.1
15
94
0
55
12
9
0
78
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72570--72609
18
2.2
18
86
8
55
20
7
5
67
1.34
72679--72741
29
2.2
29
85
5
83
17
11
1
69
1.25
73951--74003
20
2.7
20
87
0
79
32
20
16
30
1.95
76070--76107
8
4.8
8
81
12
51
71
0
26
2
1.00
78161--78211
19
2.7
19
93
0
84
17
29
25
27
1.98
80018--80054
19
1.9
19
89
10
58
32
29
5
32
1.80
80238--80390
23
6.7
23
96
0
279
27
26
28
16
1.97
80901--80955
2
27.0
2
96
3
101
49
0
1
49
1.11
82984--83018
10
3.5
10
92
0
61
11
22
17
48
1.79
82973--83018
20
2.3
20
92
0
74
15
23
15
45
1.84
84455--84527
36
2.0
37
84
10
96
50
1
4
43
1.29

Tables:   1

The End!