Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000392.1 Hibiscus syriacus cultivar Beakdansim tig00000720_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113515

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2184--2225
18
2.3
18
88
12
50
71
2
4
21
1.16
3370--3421
27
1.9
27
84
0
68
48
0
0
51
1.00
3471--3507
10
3.5
11
82
10
51
21
5
5
67
1.31
6650--6695
23
2.0
23
91
0
74
17
23
26
32
1.97
8440--8489
14
3.5
14
75
21
50
74
0
6
20
1.03
9223--9401
95
1.9
95
92
2
306
29
19
18
32
1.96
13167--13215
16
3.0
17
75
19
50
73
0
4
22
1.00
20659--20698
17
2.4
17
95
0
71
45
2
25
27
1.66
24840--24882
20
2.1
21
87
8
63
18
13
0
67
1.23
24839--24888
20
2.5
20
75
15
59
18
18
0
64
1.30
29118--29162
22
2.0
22
95
0
81
24
33
22
20
1.97
29760--29805
23
2.0
23
91
0
74
30
26
26
17
1.97
31502--31553
22
2.4
22
96
0
95
40
23
1
34
1.66
32010--32129
64
1.9
63
89
3
188
29
21
15
33
1.95
41943--41992
25
2.0
26
84
11
68
46
2
16
36
1.58
42239--42267
15
1.9
15
100
0
58
20
0
17
62
1.33
45912--45952
13
3.2
13
92
0
73
48
24
0
26
1.51
45937--46018
45
2.0
41
84
15
107
43
24
4
26
1.74
74109--74178
36
2.0
36
88
8
108
34
20
24
21
1.97
75246--75315
36
2.0
36
88
8
108
34
18
24
22
1.96
75760--75784
2
12.5
2
100
0
50
48
0
0
52
1.00
76954--77023
35
2.0
36
88
8
108
20
24
21
34
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82258--82348
43
2.1
43
91
0
146
31
28
4
35
1.77
87910--87934
12
2.1
12
100
0
50
40
24
16
20
1.91
96285--96427
29
4.9
28
84
5
187
48
13
4
33
1.61
97480--97659
65
2.8
62
80
8
193
28
18
23
30
1.98
97500--97707
65
3.2
63
79
8
199
26
17
23
32
1.97
97670--97707
20
1.9
20
88
0
58
21
15
31
31
1.94
100332--100412
22
3.6
22
76
6
83
25
22
25
25
2.00
106218--106275
20
2.9
20
97
0
107
18
15
34
31
1.93
106091--106255
65
2.6
65
80
13
189
26
17
24
31
1.97

Tables:   1

The End!