genome.fa.s3921.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003921.1 Hibiscus syriacus cultivar Beakdansim tig00008477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85048

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1375--1407	14	2.2	16	89	10	52	18	21	33	27	1.96
7972--8018	16	2.9	16	93	0	85	57	21	12	8	1.62
9121--9162	14	3.3	14	75	25	56	50	26	16	7	1.71
9121--9196	24	3.2	24	92	0	116	43	27	17	11	1.84
9128--9210	24	3.5	24	85	6	98	43	25	16	14	1.86
10814--10928	3	37.7	3	89	3	176	35	0	0	63	1.01
12260--12295	15	2.4	16	82	17	51	33	0	0	66	0.92
12397--12708	149	2.1	147	82	9	378	39	6	6	47	1.55
12686--12721	2	18.0	2	100	0	72	50	0	0	50	1.00
13223--13258	18	2.0	18	88	0	54	25	2	0	72	0.98
14786--14829	21	2.2	20	83	4	52	22	15	4	56	1.57
14893--14958	20	3.2	20	75	10	53	16	12	10	60	1.58
15183--15266	42	2.0	42	85	0	114	48	13	19	19	1.80
21707--21838	54	2.4	54	80	5	142	42	15	21	20	1.89
22229--22271	22	2.0	22	95	0	77	32	16	13	37	1.88
22926--23242	45	7.0	45	92	1	499	24	23	19	33	1.97
23599--23642	3	14.7	3	90	0	70	38	0	0	61	0.96
23612--23649	18	2.1	18	90	0	58	50	0	0	50	1.00
24947--25031	6	11.7	7	72	17	52	28	2	3	65	1.21
25001--25043	23	1.9	22	86	13	61	30	0	4	65	1.13
25112--25442	148	2.3	145	82	12	376	40	5	6	47	1.53
25245--25295	22	2.3	22	83	10	59	41	1	0	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29074--29100	13	2.1	13	100	0	54	14	22	33	29	1.94
36555--36661	19	5.3	19	78	13	88	29	28	5	36	1.80
39731--39783	20	2.6	21	75	3	63	15	16	33	33	1.90
40884--41156	85	3.2	85	94	1	467	58	3	13	24	1.51
41156--41240	36	2.4	34	80	18	93	69	1	9	20	1.23
42180--42220	20	2.0	20	100	0	82	14	24	34	26	1.94
43113--43152	21	1.9	21	84	0	53	40	20	17	22	1.92
44880--44933	23	2.4	22	87	6	72	33	20	25	20	1.97
46316--46353	20	1.9	20	100	0	76	13	26	34	26	1.93
48932--48966	18	1.9	18	88	11	54	54	5	17	22	1.64
49859--50164	149	2.1	149	94	1	533	26	16	20	35	1.95
53906--53940	18	1.9	18	88	11	54	54	5	17	22	1.64
54825--55131	149	2.1	149	95	1	553	26	17	21	34	1.95
55832--56084	2	132.5	2	68	21	143	53	5	1	39	1.33
55907--56082	5	36.0	5	70	19	81	53	4	1	40	1.31
55833--56085	66	3.8	63	77	18	185	53	5	1	39	1.33
55823--56073	77	3.5	70	77	20	190	53	4	1	39	1.33
65622--65666	23	2.0	24	87	12	69	4	22	2	71	1.15
68933--68981	2	25.0	2	91	4	82	46	0	2	51	1.12
70713--70750	20	1.9	20	88	0	58	15	7	10	65	1.45

Tables:   1

The End!