genome.fa.s3923.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003923.1 Hibiscus syriacus cultivar Beakdansim tig00008481_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75714

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2123--2191	19	3.5	20	71	13	63	31	20	11	36	1.88
7285--7328	13	3.4	13	93	0	79	34	20	13	31	1.92
7339--7506	85	2.0	83	89	6	259	30	20	16	32	1.95
7549--7587	2	19.5	2	100	0	78	48	0	0	51	1.00
8782--8829	16	3.0	16	100	0	96	68	12	12	6	1.37
9614--9685	33	2.2	32	78	11	74	52	5	2	38	1.39
14321--14358	14	2.7	14	100	0	76	42	21	0	36	1.53
14313--14358	7	6.4	7	79	20	51	41	21	0	36	1.54
21857--21898	6	6.8	6	89	5	66	69	0	0	30	0.89
21857--21903	18	2.6	19	83	10	71	70	0	0	29	0.88
21842--21905	27	2.4	27	80	15	71	68	0	0	31	0.90
21911--22249	37	8.8	36	74	16	206	42	9	5	43	1.59
21983--22061	23	3.4	23	94	3	133	40	10	5	44	1.60
21942--22100	83	1.9	84	89	5	250	40	10	5	44	1.60
22030--22248	110	2.0	110	83	8	273	41	10	5	43	1.61
28749--28858	55	2.0	55	100	0	220	40	23	16	20	1.91
29221--29571	95	3.9	89	78	13	353	38	7	14	38	1.76
29271--29443	81	2.1	81	91	2	276	39	8	15	36	1.76
29287--29417	26	4.9	26	71	13	86	38	9	15	36	1.79
31308--31341	2	17.0	2	100	0	68	50	0	0	50	1.00
32007--32061	20	2.6	21	85	5	67	70	1	3	23	1.12
31974--32091	51	2.3	51	80	13	120	69	1	6	22	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32006--32088	22	4.0	22	73	17	70	68	2	4	24	1.21
33140--33221	38	2.2	38	88	2	121	35	35	6	23	1.80
33959--34858	106	8.6	106	86	6	1228	23	17	25	33	1.97
34518--34795	91	2.9	92	84	10	310	23	18	24	33	1.97
34412--34795	197	1.9	197	90	3	612	23	18	25	33	1.97
37082--37235	31	5.0	31	93	1	256	37	20	20	22	1.95
37414--37460	23	2.0	24	91	4	78	34	21	0	44	1.52
37973--38017	21	2.1	21	87	0	63	15	24	28	31	1.96
40917--41070	31	5.0	31	93	1	256	37	20	20	22	1.95
41249--41295	23	2.0	24	91	4	78	34	21	0	44	1.52
41808--41852	21	2.1	21	87	0	63	15	24	28	31	1.96
44964--45025	22	2.9	22	73	21	69	69	3	6	20	1.25
46080--46162	38	2.2	38	91	0	130	33	36	7	22	1.82
46317--46373	23	2.6	21	82	15	71	70	0	0	29	0.88
46317--46371	20	2.7	22	86	13	75	69	0	0	30	0.89
46336--46378	20	2.2	20	87	8	61	69	0	0	30	0.88
46515--46560	2	23.0	2	100	0	92	50	0	0	50	1.00
48372--48437	21	3.1	21	77	0	78	54	18	3	24	1.57
48437--48546	25	4.2	25	76	12	105	46	18	2	32	1.63
49165--49947	390	2.0	392	89	1	1192	27	17	17	37	1.92
50658--50724	12	6.1	11	72	20	52	11	13	0	74	1.07
50658--50700	14	3.3	13	87	9	61	13	9	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54986--55126	69	2.0	69	100	0	282	20	19	23	36	1.95
62627--62811	2	92.5	2	82	0	208	49	44	4	2	1.34
63311--63351	17	2.4	17	100	0	82	31	12	4	51	1.60
72435--73664	614	2.0	614	99	0	2451	28	18	22	30	1.97

Tables:   1

The End!