genome.fa.s3926.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003926.1 Hibiscus syriacus cultivar Beakdansim tig00008486_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92617

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4408--4440	3	11.0	3	93	0	57	30	3	66	0	1.06
11401--11433	16	2.0	17	88	5	50	36	9	12	42	1.74
11620--11682	24	2.6	24	82	0	63	23	9	14	52	1.71
20217--20274	30	1.9	29	89	6	89	46	0	0	53	1.00
21556--21584	14	2.0	15	93	6	51	0	31	0	68	0.89
22909--22969	23	2.7	23	92	0	95	18	24	26	31	1.97
29866--29925	23	2.6	23	83	0	84	21	28	25	25	1.99
31682--31876	45	4.4	44	81	4	178	24	21	28	25	1.99
37154--37343	43	4.4	44	76	9	169	49	5	15	28	1.68
37544--37576	11	2.8	12	90	9	59	42	6	15	36	1.71
40288--40457	41	4.1	41	73	15	134	34	15	17	32	1.91
40212--40457	124	2.0	124	84	3	325	32	14	21	31	1.93
40918--40965	22	2.2	22	96	0	87	43	10	14	31	1.79
42244--42433	41	4.6	41	80	1	193	28	20	22	28	1.98
42244--42415	82	2.1	82	84	2	220	26	19	22	31	1.98
42256--42433	82	2.2	82	81	2	214	29	20	20	28	1.98
42431--42542	44	2.6	44	78	13	117	19	14	21	44	1.86
42458--42542	44	1.9	44	85	4	118	23	15	21	40	1.91
49952--50032	18	4.3	19	80	14	89	43	0	0	56	0.99
49952--50021	3	24.0	3	77	11	74	41	0	0	58	0.98
50783--50811	9	3.2	9	100	0	58	68	0	31	0	0.89
51628--51679	15	3.3	15	75	20	52	44	1	0	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58935--58979	22	2.0	22	86	4	63	28	31	26	13	1.94
60263--60480	103	2.1	103	93	0	373	26	13	22	37	1.91
60499--60564	23	2.9	23	83	0	78	22	27	24	25	2.00
64608--64684	22	3.5	22	94	0	136	33	10	14	41	1.80
65359--65553	76	2.6	75	91	0	300	25	21	19	34	1.96
65488--65637	45	3.3	45	89	1	219	25	22	18	34	1.96
65578--66156	76	7.4	76	74	14	480	24	19	20	35	1.96
65732--65880	45	3.3	45	90	3	237	24	22	18	34	1.96
65359--66156	243	3.3	242	91	3	1257	24	20	20	34	1.96
65821--66156	152	2.2	153	94	0	602	24	18	21	35	1.96
66319--66399	18	4.3	19	80	14	89	43	0	0	56	0.99
66319--66388	3	24.0	3	77	11	74	41	0	0	58	0.98
67862--67892	13	2.3	14	94	5	55	41	0	0	58	0.98
69171--69228	21	2.8	21	86	0	71	44	17	34	3	1.65
69718--69905	43	4.4	42	81	7	200	34	22	15	26	1.95
69718--69905	85	2.2	86	86	2	254	34	22	15	26	1.95
70667--70756	41	2.1	43	80	13	107	31	6	1	61	1.29
70797--70855	2	29.5	2	100	0	118	50	0	0	49	1.00
72457--72594	60	2.3	60	76	9	147	36	17	15	30	1.91
80111--80199	40	2.2	40	90	2	135	22	16	23	37	1.94
84790--84819	15	1.9	16	93	6	53	40	6	26	26	1.81
84825--84913	40	2.3	39	82	7	108	22	15	23	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87197--87273	20	3.8	19	77	17	75	24	32	16	25	1.96

Tables:   1

The End!