Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003929.1 Hibiscus syriacus cultivar Beakdansim tig00008493_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81941

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1565--1597
2
16.5
2
100
0
66
51
0
0
48
1.00
7997--8053
29
2.0
29
96
0
105
15
33
31
19
1.93
8112--8167
29
1.9
29
92
0
94
14
35
30
19
1.91
8171--8255
33
2.6
33
86
3
109
9
37
27
25
1.87
8237--8283
14
3.4
14
93
0
76
8
29
38
23
1.84
8326--8383
29
2.0
29
89
0
89
22
27
36
13
1.92
10553--10605
20
2.7
20
78
0
70
43
18
16
20
1.88
10593--10641
21
2.3
21
82
0
53
32
28
12
26
1.92
10616--11149
57
9.3
57
74
7
332
34
21
15
28
1.94
10732--10798
20
3.3
20
93
0
107
31
26
14
26
1.95
10752--10931
77
2.3
77
87
1
254
35
22
14
27
1.93
10675--10876
97
2.1
97
94
0
350
34
23
14
27
1.94
10838--10876
20
2.0
20
94
0
69
35
20
15
28
1.93
10849--11128
115
2.4
114
86
2
391
35
20
17
26
1.94
13149--13198
20
2.5
20
83
0
64
46
18
14
22
1.84
13204--13244
21
2.0
21
95
0
73
29
29
9
31
1.89
13272--13339
20
3.4
20
91
0
109
30
22
17
29
1.97
13204--13386
97
1.9
99
85
4
255
32
20
15
30
1.94
13312--13783
172
2.8
172
89
0
705
35
21
15
27
1.93
13312--13783
57
8.3
57
87
0
656
35
21
15
27
1.93
14141--14181
16
2.5
17
78
21
52
48
14
2
34
1.57
14627--14661
2
17.5
2
100
0
70
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15861--15930
33
2.1
33
89
0
104
50
14
7
28
1.69
20787--20827
2
20.5
2
84
0
55
48
7
0
43
1.30
21025--21096
31
2.3
31
100
0
144
40
9
19
30
1.84
21545--21576
2
16.0
2
100
0
64
50
0
0
50
1.00
22705--22851
59
2.5
59
76
7
138
34
16
17
31
1.92
24468--24538
22
3.3
22
75
11
65
19
0
30
49
1.49
25677--25721
2
22.5
2
100
0
90
51
0
0
48
1.00
26882--26912
16
2.0
15
93
6
53
12
25
41
19
1.87
27059--27117
19
3.1
19
87
4
84
71
0
1
27
0.96
27064--27118
3
18.0
3
81
10
67
69
0
1
29
0.99
27240--27471
36
6.1
39
82
10
207
46
5
4
43
1.45
27431--27485
27
2.0
27
92
0
92
49
5
3
41
1.43
27444--27530
35
2.4
36
73
16
90
45
9
1
43
1.43
27446--27532
36
2.3
38
76
9
99
45
8
1
44
1.40
27431--27496
27
2.5
26
85
7
73
48
6
3
42
1.43
27395--27522
63
2.0
64
83
7
163
46
7
3
42
1.51
45735--45796
16
3.8
16
83
14
81
41
6
20
30
1.78
50560--50600
21
2.0
21
85
0
55
39
0
7
53
1.29
60978--61114
59
2.3
60
78
7
145
36
21
5
36
1.76
61377--61409
16
2.1
16
94
0
57
33
0
15
51
1.43
61375--61411
18
2.1
18
89
0
56
32
0
16
51
1.45
64938--65107
59
2.9
59
76
7
148
34
22
5
37
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65241--65399
60
2.7
60
83
7
180
45
5
11
36
1.65
66131--66175
2
22.0
2
95
4
81
48
2
0
48
1.13
69231--69284
2
27.0
2
88
0
81
55
0
0
44
0.99
72268--72303
2
18.0
2
100
0
72
50
0
0
50
1.00
76022--76058
12
3.0
13
84
11
51
48
0
0
51
1.00

Tables:   1

The End!