Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000393.1 Hibiscus syriacus cultivar Beakdansim tig00000721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 145374
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Found at i:3707 original size:16 final size:16
Alignment explanation
Indices: 3686--3716 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
3676 CACCTTTTAG
3686 GTGTAGAAAACAGACT
1 GTGTAGAAAACAGACT
3702 GTGTAGAAAACAGAC
1 GTGTAGAAAACAGAC
3717 ATGTTGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.13, G:0.26, T:0.16
Consensus pattern (16 bp):
GTGTAGAAAACAGACT
Found at i:6014 original size:51 final size:51
Alignment explanation
Indices: 5938--6038 Score: 175
Period size: 51 Copynumber: 2.0 Consensus size: 51
5928 TAAGGAAAGG
* * *
5938 ATAGGCTGTAAAGAAATATCGGTTTGAACATGTTGAAATTCCTTGTAACTA
1 ATAGGCTGTAAAGAAATATCGGTTTGAACAGGCTAAAATTCCTTGTAACTA
5989 ATAGGCTGTAAAGAAATATCGGTTTGAACAGGCTAAAATTCCTTGTAACT
1 ATAGGCTGTAAAGAAATATCGGTTTGAACAGGCTAAAATTCCTTGTAACT
6039 CTCCCCCTGA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.32
Consensus pattern (51 bp):
ATAGGCTGTAAAGAAATATCGGTTTGAACAGGCTAAAATTCCTTGTAACTA
Found at i:9128 original size:54 final size:55
Alignment explanation
Indices: 9015--9181 Score: 182
Period size: 54 Copynumber: 3.0 Consensus size: 55
9005 CTTAGGTCTG
* *
9015 AGACACTGGTGCAAGTGTCCGACAGGGAGGTTCAAGATCA-AGT-TTCGTGCTTGCCA
1 AGACACTGGTGCAAGTGTCCGACAAGGAGG-TCAAGAT-AGAGTATT-GAGCTTGCCA
* *
9071 AGACAGTGGTGCAAGTGTCCGACAAGGA-GTCAAGATAGAGTATTGGGCTTGCCA
1 AGACACTGGTGCAAGTGTCCGACAAGGAGGTCAAGATAGAGTATTGAGCTTGCCA
* ** *
9125 AGACATTGGTGCAAGTGTCCGA-AAGGGAATCTCAAGATAGA-TATCGAGCTTGCCA
1 AGACACTGGTGCAAGTGTCCGACAA-GG-AGGTCAAGATAGAGTATTGAGCTTGCCA
9180 AG
1 AG
9182 GCCACTAGAC
Statistics
Matches: 99, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
53 3 0.03
54 42 0.42
55 18 0.18
56 36 0.36
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.22
Consensus pattern (55 bp):
AGACACTGGTGCAAGTGTCCGACAAGGAGGTCAAGATAGAGTATTGAGCTTGCCA
Found at i:17397 original size:210 final size:210
Alignment explanation
Indices: 17022--17621 Score: 895
Period size: 210 Copynumber: 2.9 Consensus size: 210
17012 TTGATCTTTT
* * * *
17022 AATTTTGTCAAT--GACCACTAAACTATTTAATTGGATCCAATCAAACCACAAAGGCTAAAATTT
1 AATTTTGTCAATCAGACCACTAAATTATTTAATTGTATCCAATCAAACCACCAACGCTAAAATTT
* * *
17085 AATAGAAGTGTTGACATGACAGTTAATAAATATTTGTATTAAGATTTAATCATCTAACTAAATTA
66 AATAGAAGTATCGACATGACAGTTAATAAATATTTGTATTAAGATTTAATCATCTAACCAAATTA
17150 TGACACATCTTACCGATCTTGAAGTGCTTATGACACATCTTACCAAGTATTATCATCTGGTTGGA
131 TGACACATCTTACCGATCTTGAAGTGCTTATGACACATCTTACCAAGTATTATCATCTGGTTGGA
17215 GTTAAAAATAATAAC
196 GTTAAAAATAATAAC
* *
17230 AATTTTATCAATCAGACCACTAAATTATTTAATTGTATCCAATCAAACCACCGACGCTAAAATTT
1 AATTTTGTCAATCAGACCACTAAATTATTTAATTGTATCCAATCAAACCACCAACGCTAAAATTT
* *
17295 AATAGAAATATCGACATGACAGTTAATAAATATTTGTATCAAGATTTAATCATCTAACCAAATTA
66 AATAGAAGTATCGACATGACAGTTAATAAATATTTGTATTAAGATTTAATCATCTAACCAAATTA
* * *
17360 TGACACATCTTACCGATCTTAAAGTGCTCAGGACACATCTTACCAAGTATTATCATCTGGTTGGA
131 TGACACATCTTACCGATCTTGAAGTGCTTATGACACATCTTACCAAGTATTATCATCTGGTTGGA
*
17425 GTTAAAACTAATAAC
196 GTTAAAAATAATAAC
17440 AATTTTGTCAATCAGACCACTAAATTATTTAATTGTATCCAATCAAACCACCAACGCTAAAATTT
1 AATTTTGTCAATCAGACCACTAAATTATTTAATTGTATCCAATCAAACCACCAACGCTAAAATTT
* * ** *
17505 AACAGAAGTA-CTAACAT-AGCAGTTTCCT-AATATTTGTATTAAGATTTAATAATCTAACCAAA
66 AATAGAAGTATC-GACATGA-CAG-TTAATAAATATTTGTATTAAGATTTAATCATCTAACCAAA
* * * * * * *
17567 TTATGACATATATTACCGGTTTTGAATTGTTTATGACACATATTACCAAGTATTA
128 TTATGACACATCTTACCGATCTTGAAGTGCTTATGACACATCTTACCAAGTATTA
17622 CTAGAGATGG
Statistics
Matches: 353, Mismatches: 34, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
208 11 0.03
209 2 0.01
210 337 0.95
211 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (210 bp):
AATTTTGTCAATCAGACCACTAAATTATTTAATTGTATCCAATCAAACCACCAACGCTAAAATTT
AATAGAAGTATCGACATGACAGTTAATAAATATTTGTATTAAGATTTAATCATCTAACCAAATTA
TGACACATCTTACCGATCTTGAAGTGCTTATGACACATCTTACCAAGTATTATCATCTGGTTGGA
GTTAAAAATAATAAC
Found at i:17800 original size:32 final size:33
Alignment explanation
Indices: 17785--17850 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 33
17775 GGTGATTATT
17785 GGATCAGTTG-TTTTTCGGTTCGGGTCAATATC
1 GGATCAGTTGATTTTTCGGTTCGGGTCAATATC
* * *
17817 GGATCGGTTGATTTTT-TGATCGGGTCAATATC
1 GGATCAGTTGATTTTTCGGTTCGGGTCAATATC
17849 GG
1 GG
17851 GCCGGGTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 25 0.83
33 5 0.17
ACGTcount: A:0.17, C:0.14, G:0.30, T:0.39
Consensus pattern (33 bp):
GGATCAGTTGATTTTTCGGTTCGGGTCAATATC
Found at i:25301 original size:16 final size:15
Alignment explanation
Indices: 25279--25325 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
25269 ATATTTTAAA
25279 TAAATAAATATATTT
1 TAAATAAATATATTT
*
25294 TAAA-ATAATATGATTA
1 TAAATA-AATAT-ATTT
*
25310 TAATTAAATATATTT
1 TAAATAAATATATTT
25325 T
1 T
25326 GAATTTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
14 1 0.04
15 13 0.50
16 11 0.42
17 1 0.04
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
TAAATAAATATATTT
Found at i:25785 original size:13 final size:12
Alignment explanation
Indices: 25769--25815 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 12
25759 CTTTCAATTT
25769 TTTTTACTTATTA
1 TTTTTA-TTATTA
25782 TTTTTATATATTA
1 TTTTTAT-TATTA
25795 TTATTTATTATT-
1 TT-TTTATTATTA
25807 TTATTTATT
1 TT-TTTATT
25816 CAAGAATTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
12 10 0.31
13 17 0.53
14 5 0.16
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTTATTATTA
Found at i:27259 original size:22 final size:20
Alignment explanation
Indices: 27229--27268 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
27219 GCATTTGTAT
27229 TTTGCATTTGTACATTTTTACG
1 TTTGCA-TT-TACATTTTTACG
*
27251 TTTGTATTTACATTTTTA
1 TTTGCATTTACATTTTTA
27269 AATTTACATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 2 0.12
22 5 0.29
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.60
Consensus pattern (20 bp):
TTTGCATTTACATTTTTACG
Found at i:30340 original size:2 final size:2
Alignment explanation
Indices: 30333--30358 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
30323 TTATCCTTTA
30333 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
30359 CCTTTGTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:30670 original size:13 final size:13
Alignment explanation
Indices: 30652--30691 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
30642 CTCATCCAGC
*
30652 AAAGAAAGAAGAA
1 AAAGAAAAAAGAA
30665 AAAGAAAAAAGAA
1 AAAGAAAAAAGAA
*
30678 AAA-AAAAAGGAA
1 AAAGAAAAAAGAA
30690 AA
1 AA
30692 TTGAATAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 10 0.40
13 15 0.60
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAGAA
Found at i:35260 original size:54 final size:54
Alignment explanation
Indices: 35126--35263 Score: 170
Period size: 54 Copynumber: 2.6 Consensus size: 54
35116 AGAAATCTTG
** *
35126 GCAGAAGCCACAGAAAAGGATGAATGTGTTGTCAAACGCTTTATGAACGTCTGA
1 GCAGAAGCCACAGAAAAGGATGAATGTGTTGTCAAACGCTTTACAAACATCTGA
* ** * *
35180 GCAAAAAACACA-AGAAAGGATGAATGTGTTGTCAAATGTTTTACAAACATCTGA
1 GCAGAAGCCACAGA-AAAGGATGAATGTGTTGTCAAACGCTTTACAAACATCTGA
* *
35234 GCAGAAGCCACAGAAAAAGATAAATGTGTT
1 GCAGAAGCCACAGAAAAGGATGAATGTGTT
35264 TTACAAACCA
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
53 1 0.01
54 67 0.97
55 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.22
Consensus pattern (54 bp):
GCAGAAGCCACAGAAAAGGATGAATGTGTTGTCAAACGCTTTACAAACATCTGA
Found at i:35669 original size:22 final size:22
Alignment explanation
Indices: 35638--35692 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
35628 ATCTACACTC
*
35638 TTCAAAGATGATAGATTCCCTT
1 TTCAAAGATGACAGATTCCCTT
* *
35660 TTTAAAGATGACAGATTCTCTT
1 TTCAAAGATGACAGATTCCCTT
35682 TTCAAAGATGA
1 TTCAAAGATGA
35693 AAGCTTTATC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (22 bp):
TTCAAAGATGACAGATTCCCTT
Found at i:36431 original size:112 final size:112
Alignment explanation
Indices: 36108--36840 Score: 932
Period size: 112 Copynumber: 6.5 Consensus size: 112
36098 CCATCATTCA
** *
36108 ATGGATCAACA-TTCCAG-GTCGAGTTTATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAA
1 ATGGATCAACATTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAA-GAAGAAGAAA
* *
36171 TTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCA-TTCG
64 TTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATTCATCACTT-G
* * *
36220 ATGGATCAGCATTTCCAGAGAAAGTTCATAATGGGAAGAACTCATCTGAAGAAGGAAGAAGAAGT
1 ATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA-GAAGAAGAAAT
* * *
36285 TCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCATTTG
65 TCATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATTCATCACTTG
* * ** * * *
36333 ATGGATCATCATTACCAGTTAGAGTTCATAATGAGAAGAACTCATTTGAAGAAGAAGAAGAAGTT
1 ATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAATT
* * * *
36398 CATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCAATGG
66 CATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATTCATCACTTG
* * * ** * * *
36445 ATGGATCAGCAGTGCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAATAAATT
1 ATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAATT
* * *
36510 CATAATGAGAAGAATTTGTTCAACCTTTTCCCTGAATTCATCACTTG
66 CATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATTCATCACTTG
* * *** * * *
36557 ATGAATTATTTTTTCCAGAGAAAGTTCATAATAAGAAGAACTTATCTGAAGAGGAAGAAGAAATT
1 ATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAATT
* **
36622 CATAATGAGAAGAATTTGTTTAACCTTTTGCTCGAATTCATCACTTG
66 CATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATTCATCACTTG
* * *
36669 ATGGATTAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAATT
1 ATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAATT
* * *
36734 CATAATGAGAAGAATTTGTTTAACCTTTTGCCTGAATTCATCACTTG
66 CATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATTCATCACTTG
* * *
36781 ATGGATTAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATATGAAGAAGAAGAAG
1 ATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAG
36841 TGCATAATGG
Statistics
Matches: 557, Mismatches: 61, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
112 421 0.76
113 133 0.24
114 3 0.01
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.29
Consensus pattern (112 bp):
ATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAATT
CATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATTCATCACTTG
Found at i:38757 original size:2 final size:2
Alignment explanation
Indices: 38750--38775 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
38740 AGTAATGTAA
38750 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
38776 TTGTTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38939 original size:16 final size:15
Alignment explanation
Indices: 38917--38963 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
38907 ATATTTTAAA
38917 TAAATAAATATATTT
1 TAAATAAATATATTT
*
38932 TAAA-ATAATATGATTA
1 TAAATA-AATAT-ATTT
*
38948 TAATTAAATATATTT
1 TAAATAAATATATTT
38963 T
1 T
38964 GAATTTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
14 1 0.04
15 13 0.50
16 11 0.42
17 1 0.04
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
TAAATAAATATATTT
Found at i:42771 original size:96 final size:96
Alignment explanation
Indices: 42600--42795 Score: 275
Period size: 96 Copynumber: 2.0 Consensus size: 96
42590 ATTCCTTTAA
* * * *
42600 AGGTGCAAAGGCCAAGATGTTGACTCAAGATATAGATACTGTCATACCAAGGAGGAGAAGTCCCT
1 AGGTGCAAAGGCCAAGATGTTGACTCAAGAGATAGATACAGTAATACCAAGGAGGAGAAGACCCT
* * * * *
42665 TCACAGAGACATGAAGATCGCTTCGCATTGG
66 TCACAAAGACACGAAGACCACTTCACATTGG
* *
42696 AGGTGCAAAGGCTAAGATGTTGACTCAAGAGATAGATACAGTAATACCAAGGATGAGAAGACCCT
1 AGGTGCAAAGGCCAAGATGTTGACTCAAGAGATAGATACAGTAATACCAAGGAGGAGAAGACCCT
* *
42761 TTATAAAGACACGAAGACCACTTCACATTGG
66 TCACAAAGACACGAAGACCACTTCACATTGG
42792 AGGT
1 AGGT
42796 AAGAATGGAG
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 87 1.00
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.20
Consensus pattern (96 bp):
AGGTGCAAAGGCCAAGATGTTGACTCAAGAGATAGATACAGTAATACCAAGGAGGAGAAGACCCT
TCACAAAGACACGAAGACCACTTCACATTGG
Found at i:50067 original size:22 final size:21
Alignment explanation
Indices: 50025--50064 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
50015 GAGTTTATTT
*
50025 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
50046 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
50065 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:52085 original size:45 final size:46
Alignment explanation
Indices: 51999--52087 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 46
51989 GGTACACTAA
** * * *
51999 GAGTGCATTGATGCATGGTCTTGTGCATTGATGCATCAAATGCACT
1 GAGTGCATCAATGCATGGTCATGTGCATCGATACATCAAATGCACT
52045 GAGTGCATCAATGCATGGT-ATGTGCATCGATACA-CAAAATGCA
1 GAGTGCATCAATGCATGGTCATGTGCATCGATACATC-AAATGCA
52088 TTCGATGTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
44 1 0.03
45 19 0.51
46 17 0.46
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (46 bp):
GAGTGCATCAATGCATGGTCATGTGCATCGATACATCAAATGCACT
Found at i:52132 original size:20 final size:20
Alignment explanation
Indices: 52107--52144 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
52097 TGAAAAATTA
52107 ATTGGTGCATCGATGCATAG
1 ATTGGTGCATCGATGCATAG
* *
52127 ATTGGTGTATCGGTGCAT
1 ATTGGTGCATCGATGCAT
52145 CACTTTGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (20 bp):
ATTGGTGCATCGATGCATAG
Found at i:52772 original size:12 final size:12
Alignment explanation
Indices: 52755--52798 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
52745 TTCAAGCTTG
52755 AATCGAGCTCAA
1 AATCGAGCTCAA
**
52767 AATCGAGCT-TT
1 AATCGAGCTCAA
52778 AATCGAGCTCAA
1 AATCGAGCTCAA
*
52790 AATTGAGCT
1 AATCGAGCT
52799 TTAATCGAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (12 bp):
AATCGAGCTCAA
Found at i:52781 original size:11 final size:11
Alignment explanation
Indices: 52767--52820 Score: 54
Period size: 11 Copynumber: 4.8 Consensus size: 11
52757 TCGAGCTCAA
52767 AATCGAGCTTT
1 AATCGAGCTTT
**
52778 AATCGAGCTCAA
1 AATCGAGCT-TT
*
52790 AATTGAGCTTT
1 AATCGAGCTTT
*
52801 AATCGAGCTTC
1 AATCGAGCTTT
*
52812 AATTGAGCT
1 AATCGAGCT
52821 CCTGATTTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
11 26 0.76
12 8 0.24
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (11 bp):
AATCGAGCTTT
Found at i:52781 original size:23 final size:23
Alignment explanation
Indices: 52749--52809 Score: 104
Period size: 23 Copynumber: 2.7 Consensus size: 23
52739 GGTGAGTTCA
*
52749 AGCTTGAATCGAGCTCAAAATCG
1 AGCTTTAATCGAGCTCAAAATCG
*
52772 AGCTTTAATCGAGCTCAAAATTG
1 AGCTTTAATCGAGCTCAAAATCG
52795 AGCTTTAATCGAGCT
1 AGCTTTAATCGAGCT
52810 TCAATTGAGC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (23 bp):
AGCTTTAATCGAGCTCAAAATCG
Found at i:64405 original size:48 final size:46
Alignment explanation
Indices: 64341--64441 Score: 157
Period size: 48 Copynumber: 2.2 Consensus size: 46
64331 CAAAAAGAGA
*
64341 GAGACTCATTGGGGAAAAGAGGAAGCTCGCCAGAGTGAGAGAAAAACT
1 GAGACTCATTGGGGAAAAGAGGAAACTCGCCAGAGT--GAGAAAAACT
* *
64389 GAGATTCATTGGGGAAAAGAGGAAACTCGCTAGAGTGAGAAAAACT
1 GAGACTCATTGGGGAAAAGAGGAAACTCGCCAGAGTGAGAAAAACT
64435 GAGACTC
1 GAGACTC
64442 TTTGTTAGGT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
46 16 0.33
48 33 0.67
ACGTcount: A:0.40, C:0.14, G:0.32, T:0.15
Consensus pattern (46 bp):
GAGACTCATTGGGGAAAAGAGGAAACTCGCCAGAGTGAGAAAAACT
Found at i:64910 original size:11 final size:12
Alignment explanation
Indices: 64886--64914 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
64876 TTTATTTTAT
64886 AAATTTTAAAAA
1 AAATTTTAAAAA
64898 AAATTTTAAAAA
1 AAATTTTAAAAA
64910 AAATT
1 AAATT
64915 AAACTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
AAATTTTAAAAA
Found at i:66753 original size:9 final size:9
Alignment explanation
Indices: 66741--66825 Score: 52
Period size: 10 Copynumber: 9.3 Consensus size: 9
66731 GTTTTTTAGT
66741 TTTTATTTA
1 TTTTATTTA
*
66750 TTTTATGTA
1 TTTTATTTA
66759 -TTTATTTA
1 TTTTATTTA
*
66767 -TTTACCATT-
1 TTTTA--TTTA
*
66776 TTTTACTTA
1 TTTTATTTA
66785 -TTTATTTA
1 TTTTATTTA
**
66793 TCTTTGCTTA
1 T-TTTATTTA
66803 CTTTTATTATA
1 -TTTTATT-TA
66814 TTTTATTTA
1 TTTTATTTA
66823 TTT
1 TTT
66826 ATTATGTTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
8 20 0.34
9 13 0.22
10 23 0.39
11 3 0.05
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.69
Consensus pattern (9 bp):
TTTTATTTA
Found at i:66803 original size:22 final size:22
Alignment explanation
Indices: 66760--66805 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
66750 TTTTATGTAT
*
66760 TTATTTATTTACCATTTTTTAC
1 TTATTTATTTACCATTTCTTAC
*
66782 TTATTTATTTATC-TTTGCTTAC
1 TTATTTATTTACCATTT-CTTAC
66804 TT
1 TT
66806 TTATTATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.20, C:0.13, G:0.02, T:0.65
Consensus pattern (22 bp):
TTATTTATTTACCATTTCTTAC
Found at i:66828 original size:18 final size:18
Alignment explanation
Indices: 66741--66830 Score: 60
Period size: 18 Copynumber: 4.9 Consensus size: 18
66731 GTTTTTTAGT
*
66741 TTTTATTTA-TT-TTATG
1 TTTTATTTATTTATTATA
** *
66757 TATTTATTTATTTACCATT
1 T-TTTATTTATTTATTATA
*
66776 TTTTACTTATTTATT-TA
1 TTTTATTTATTTATTATA
**
66793 TCTTTGCTTACTTTTATTATA
1 T-TTTATTTA--TTTATTATA
66814 TTTTATTTATTTATTAT
1 TTTTATTTATTTATTAT
66831 GTTGATATTT
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
16 1 0.02
17 10 0.18
18 28 0.49
19 3 0.05
20 12 0.21
21 3 0.05
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.69
Consensus pattern (18 bp):
TTTTATTTATTTATTATA
Found at i:68062 original size:36 final size:36
Alignment explanation
Indices: 68015--68092 Score: 156
Period size: 36 Copynumber: 2.2 Consensus size: 36
68005 ATGCTTGTAG
68015 TGAACCATAAAATGTTCACCCTAGGTAGAGCTATAC
1 TGAACCATAAAATGTTCACCCTAGGTAGAGCTATAC
68051 TGAACCATAAAATGTTCACCCTAGGTAGAGCTATAC
1 TGAACCATAAAATGTTCACCCTAGGTAGAGCTATAC
68087 TGAACC
1 TGAACC
68093 TCTATCCTTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (36 bp):
TGAACCATAAAATGTTCACCCTAGGTAGAGCTATAC
Found at i:71874 original size:29 final size:29
Alignment explanation
Indices: 71765--71891 Score: 103
Period size: 29 Copynumber: 4.3 Consensus size: 29
71755 TGTATTTTGA
* * * *
71765 TAAAATGTCCAATGTGGTTCTTTTACTTT
1 TAAAATGTCTAATGTGGTACATGTACTTT
* * *
71794 TAAAATGTTTAATATAGTACATGTA-TTT
1 TAAAATGTCTAATGTGGTACATGTACTTT
* * *
71822 TGACACGATGTCTTATGTGATACATGTACTTT
1 T-A-A-AATGTCTAATGTGGTACATGTACTTT
*
71854 TAAAATATCTAATGTGGTACATGTACTTT
1 TAAAATGTCTAATGTGGTACATGTACTTT
* *
71883 GACAATGTC
1 TAAAATGTC
71892 CAATTTGATA
Statistics
Matches: 74, Mismatches: 20, Indels: 8
0.73 0.20 0.08
Matches are distributed among these distances:
28 4 0.05
29 47 0.64
30 2 0.03
31 17 0.23
32 4 0.05
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.43
Consensus pattern (29 bp):
TAAAATGTCTAATGTGGTACATGTACTTT
Found at i:90739 original size:17 final size:18
Alignment explanation
Indices: 90717--90750 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
90707 GTTATAAGGT
*
90717 AAGTGACATATG-ATTTC
1 AAGTGAAATATGCATTTC
90734 AAGTGAAATATGCATTT
1 AAGTGAAATATGCATTT
90751 GAATATGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (18 bp):
AAGTGAAATATGCATTTC
Found at i:90884 original size:21 final size:21
Alignment explanation
Indices: 90837--90935 Score: 111
Period size: 21 Copynumber: 5.0 Consensus size: 21
90827 AGTCGAGGGT
*
90837 TACAGTGGTCCTTTGGGAC-A
1 TACAGTGGTCCTTCGGGACAA
90857 T--AGTGGTCCTTCGGGACAA
1 TACAGTGGTCCTTCGGGACAA
*
90876 TACAGTGGTCCTTCGAGACAA
1 TACAGTGGTCCTTCGGGACAA
* **
90897 TACAGTGGTCCTACTAGAC-A
1 TACAGTGGTCCTTCGGGACAA
90917 T--AGTGGTCCTTCGGGACAA
1 TACAGTGGTCCTTCGGGACAA
90936 ATTTCAGTGC
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
18 28 0.41
19 3 0.04
20 3 0.04
21 34 0.50
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (21 bp):
TACAGTGGTCCTTCGGGACAA
Found at i:92502 original size:187 final size:185
Alignment explanation
Indices: 92261--93314 Score: 1138
Period size: 187 Copynumber: 5.6 Consensus size: 185
92251 TAGGTTGTTC
* * *
92261 CGAAAATATTATCAGAGTTTAAGTTGACGGAGCGTTGTATTATCCCAA-TATAAGAAAATAAGTT
1 CGAAAATGTTATCAGAGTTTAAGTTGATGGAGCATTGTATTAT-CCAAGTATAAGAAAATAAGTT
* * * * * * * *
92325 TAAAATTAAAAATGTTACGATCATGTATAAGAAATACGGTTGCACCCAATAATGCGACGATTCGA
65 TAAAACTGAAAATGTTATGAACATATATAAGAAATACGGTTGCACCCAATAATGC-ATGGTTCAA
* *
92390 TAATAAAAAATGTTGTAATCTGGAATGTTAATACTTTTAATAATAAAACAGGTTACGT
129 TAATAAAAAA-GTTGTAATCTAGAATGTTAATACTTTTAATAATAAAATAGGTTACGT
92448 CGAAAATGTTATCAGAGTTTAAGTTGATGGAGTC-TTAG-ATTATCCAAGTATAAGAAAATAAGT
1 CGAAAATGTTATCAGAGTTTAAGTTGATGGAG-CATT-GTATTATCCAAGTATAAGAAAATAAGT
* * * * *
92511 TTAAAACTGAAAATGTTATGAATATATATAAGAAATA-TGTTGCATCTAATAATTTCATGGTTCA
64 TTAAAACTGAAAATGTTATGAACATATATAAGAAATACGGTTGCACCCAATAA-TGCATGGTTCA
* * *
92575 ATAATAAAAAATGTTGTAATCTAGAATGTTAATATTTTTAATAATAAAGTAGGTTACGC
128 ATAATAAAAAA-GTTGTAATCTAGAATGTTAATACTTTTAATAATAAAATAGGTTACGT
* * * *
92634 CAAAAATATTATCAGAGTTTAAGTTGATGGAGCCTTGTATTATTCC-ATTATAAGAAAATAAGTT
1 CGAAAATGTTATCAGAGTTTAAGTTGATGGAGCATTGTATTA-TCCAAGTATAAGAAAATAAGTT
* * * *
92698 TAAAACTGAAAATGTTATGAATATATATAAAAAATACGGTTGCACCCAATAATATCATGATTCAA
65 TAAAACTGAAAATGTTATGAACATATATAAGAAATACGGTTGCACCCAATAAT-GCATGGTTCAA
* * * *
92763 TAATAAAAGAGATTGTAATAT-GAAATGTTAATACTTTTAATAATAAAATAGGTTATGC
129 TAATAAAAAAG-TTGTAATCTAG-AATGTTAATACTTTTAATAATAAAATAGGTTACGT
* ** * * * * *
92821 CAAAAATGTTATTTGAGTTTAAGGTAATGGAGCCTTGGATTATCCTAA-TATAAGAAAATAAATT
1 CGAAAATGTTATCAGAGTTTAAGTTGATGGAGCATTGTATTATCC-AAGTATAAGAAAATAAGTT
* * * *
92885 TAAAACTGAAAATGTTATGAACATATATAAGAAATACGATTGCGCTCAATAATATCATGGTTCAA
65 TAAAACTGAAAATGTTATGAACATATATAAGAAATACGGTTGCACCCAATAAT-GCATGGTTCAA
* * * * *
92950 TAATAAAAGAGATTGTAATATAGAATGTTAATTCTTTTAGTAATAAAACAGGGTT--GT
129 TAATAAAAAAG-TTGTAATCTAGAATGTTAATACTTTTAATAATAAAATA-GGTTACGT
* * * * *
93007 GCTGAAAATGTTATTAGATTTTAAGCTGATGGAGCATTGAATTATCCCAGTATAAGAAAATAAGT
1 -C-GAAAATGTTATCAGAGTTTAAGTTGATGGAGCATTGTATTATCCAAGTATAAGAAAATAAGT
* * * * ** * * *
93072 TTGAAAAATTAAAATGTTATGAACATATATAATAAATATGGTTGCACAAAAAAATGTAATGGTTA
64 TT-AAAACTGAAAATGTTATGAACATATATAAGAAATACGGTTGCACCCAATAATG-CATGGTTC
* * * * * * *
93137 AAAAATAAAACAGGTTCTAATCTAGAATATTAATATTTTTAATAATAAAATTGGTTAAGT
127 AATAATAAAA-AAGTTGTAATCTAGAATGTTAATACTTTTAATAATAAAATAGGTTACGT
* * * * *
93197 CGAAAATGTTATCAAAGTTTAAG-CGAATGGGGCATTGGATTATCCGAGTATAAGAAAATAAGTT
1 CGAAAATGTTATCAGAGTTTAAGTTG-ATGGAGCATTGTATTATCCAAGTATAAGAAAATAAGTT
* * *
93261 TAAAACTGAAAATATTATGAACATATATAAAAAATACGGTTGCACCCATTAATG
65 TAAAACTGAAAATGTTATGAACATATATAAGAAATACGGTTGCACCCAATAATG
93315 TAATAGGTCA
Statistics
Matches: 745, Mismatches: 98, Indels: 48
0.84 0.11 0.05
Matches are distributed among these distances:
185 2 0.00
186 170 0.23
187 361 0.48
188 120 0.16
189 89 0.12
190 3 0.00
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.33
Consensus pattern (185 bp):
CGAAAATGTTATCAGAGTTTAAGTTGATGGAGCATTGTATTATCCAAGTATAAGAAAATAAGTTT
AAAACTGAAAATGTTATGAACATATATAAGAAATACGGTTGCACCCAATAATGCATGGTTCAATA
ATAAAAAAGTTGTAATCTAGAATGTTAATACTTTTAATAATAAAATAGGTTACGT
Found at i:93218 original size:376 final size:371
Alignment explanation
Indices: 92252--93304 Score: 1279
Period size: 373 Copynumber: 2.8 Consensus size: 371
92242 TGAACATTTT
* * *
92252 AGGTTGTTCCGAAAATATTATCAGAGTTTAAGTTGACGGAGCGTTGTATTATCCCAATATAAGAA
1 AGGTTGTGCCGAAAATATTATCAGAGTTTAAGTTGATGGAGCATTGTATTATCCCAATATAAGAA
* * * * **
92317 AATAAGTTT-AAAATTAAAAATGTTACGATCATGTATAAGAAATACGGTTGCACCCAATAATGCG
66 AATAAGTTTAAAAATT-AAAATGTTATGAACATATATAAAAAATACGGTTGCACCCAATAATGTA
* * * * *
92381 ACGATTCGATAATAAAAAATGTTGTAATCTGGAATGTTAATACTTTTAATAATAAAACAGGTTAC
130 ATGATTCAATAATAAAAAAGGTTGTAATCT-GAATGTTAATACTTTTAATAATAAAATAGGTTAA
* * * *
92446 GTCGAAAATGTTATCAGAGTTTAAGTTGATGGAGTCTTAGATTATCCAAGTATAAGAAAATAAGT
194 GTCGAAAATGTTATCAGAGTTTAAGGTAATGGAGCCTTGGATTATCCAA-TATAAGAAAATAAGT
* * *
92511 TTAAAACTGAAAATGTTATGAATATATATAAGAAATATGTTGCATCTAATAATTTCATGGTTCAA
258 TTAAAACTGAAAATGTTATGAACATATATAAGAAATACGTTGCATCTAATAATATCATGGTTCAA
* **
92576 TAATAAAAAATGTTGTAATCTAGAATGTTAATATTTTTAATAATAAAGT
323 TAATAAAAAATGTTGTAATATAGAATGTTAATATTTTTAATAATAAAAC
** * * * *
92625 AGGTTACGCCAAAAATATTATCAGAGTTTAAGTTGATGGAGCCTTGTATTATTCCATTATAAGAA
1 AGGTTGTGCCGAAAATATTATCAGAGTTTAAGTTGATGGAGCATTGTATTATCCCAATATAAGAA
* * * * *
92690 AATAAGTTTAAAACTGAAAATGTTATGAATATATATAAAAAATACGGTTGCACCCAATAATATCA
66 AATAAGTTTAAAAATTAAAATGTTATGAACATATATAAAAAATACGGTTGCACCCAATAATGTAA
* * * *
92755 TGATTCAATAATAAAAGAGATTGTAATATGAAATGTTAATACTTTTAATAATAAAATAGGTTATG
131 TGATTCAATAATAAAAAAGGTTGTAATCTG-AATGTTAATACTTTTAATAATAAAATAGGTTAAG
* * ** *
92820 CCAAAAATGTTATTTGAGTTTAAGGTAATGGAGCCTTGGATTATCCTAATATAAGAAAATAAATT
195 TCGAAAATGTTATCAGAGTTTAAGGTAATGGAGCCTTGGATTATCC-AATATAAGAAAATAAGTT
*
92885 TAAAACTGAAAATGTTATGAACATATATAAGAAATACGATTGC-GCTCAATAATATCATGGTTCA
259 TAAAACTGAAAATGTTATGAACATATATAAGAAATACG-TTGCATCT-AATAATATCATGGTTCA
* *
92949 ATAATAAAAGA-GATTGTAATATAGAATGTTAAT-TCTTTTAGTAATAAAAC
322 ATAATAAAAAATG-TTGTAATATAGAATGTTAATAT-TTTTAATAATAAAAC
* * * * * * *
92999 AGGGTTGTGCTGAAAATGTTATTAGATTTTAAGCTGATGGAGCATTGAATTATCCCAGTATAAGA
1 A-GGTTGTGCCGAAAATATTATCAGAGTTTAAGTTGATGGAGCATTGTATTATCCCAATATAAGA
* * ** *
93064 AAATAAGTTTGAAAAATTAAAATGTTATGAACATATATAATAAATATGGTTGCACAAAAAAATGT
65 AAATAAGTTT-AAAAATTAAAATGTTATGAACATATATAAAAAATACGGTTGCACCCAATAATGT
* * * * * * * *
93129 AATGGTTAAAAAATAAAACAGGTTCTAATCTAGAATATTAATATTTTTAATAATAAAATTGGTTA
129 AATGATTCAATAATAAAAAAGGTTGTAATCT-GAATGTTAATACTTTTAATAATAAAATAGGTTA
* * * *
93194 AGTCGAAAATGTTATCAAAGTTTAAGCG-AATGGGGCATTGGATTATCCGAGTATAAGAAAATAA
193 AGTCGAAAATGTTATCAGAGTTTAAG-GTAATGGAGCCTTGGATTATCC-AATATAAGAAAATAA
* *
93258 GTTTAAAACTGAAAATATTATGAACATATATAAAAAATACGGTTGCA
256 GTTTAAAACTGAAAATGTTATGAACATATATAAGAAATAC-GTTGCA
93305 CCCATTAATG
Statistics
Matches: 578, Mismatches: 89, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
372 1 0.00
373 255 0.44
374 68 0.12
375 61 0.11
376 190 0.33
377 3 0.01
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.33
Consensus pattern (371 bp):
AGGTTGTGCCGAAAATATTATCAGAGTTTAAGTTGATGGAGCATTGTATTATCCCAATATAAGAA
AATAAGTTTAAAAATTAAAATGTTATGAACATATATAAAAAATACGGTTGCACCCAATAATGTAA
TGATTCAATAATAAAAAAGGTTGTAATCTGAATGTTAATACTTTTAATAATAAAATAGGTTAAGT
CGAAAATGTTATCAGAGTTTAAGGTAATGGAGCCTTGGATTATCCAATATAAGAAAATAAGTTTA
AAACTGAAAATGTTATGAACATATATAAGAAATACGTTGCATCTAATAATATCATGGTTCAATAA
TAAAAAATGTTGTAATATAGAATGTTAATATTTTTAATAATAAAAC
Found at i:93895 original size:18 final size:18
Alignment explanation
Indices: 93874--93909 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
93864 AGATCCCAAT
93874 AAAATATTGGCAATGAAA
1 AAAATATTGGCAATGAAA
93892 AAAATATTGGCAATGAAA
1 AAAATATTGGCAATGAAA
93910 GGTTCCGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.06, G:0.17, T:0.22
Consensus pattern (18 bp):
AAAATATTGGCAATGAAA
Found at i:94595 original size:13 final size:13
Alignment explanation
Indices: 94577--94610 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
94567 GTAACTTAGT
94577 CGACCAAGTTTGG
1 CGACCAAGTTTGG
94590 CGACCAAGTTTGG
1 CGACCAAGTTTGG
*
94603 CAACCAAG
1 CGACCAAG
94611 GGACAACCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.29, C:0.26, G:0.26, T:0.18
Consensus pattern (13 bp):
CGACCAAGTTTGG
Found at i:96321 original size:99 final size:99
Alignment explanation
Indices: 96144--96347 Score: 236
Period size: 99 Copynumber: 2.1 Consensus size: 99
96134 ATGTATACGA
* * * *
96144 TTTCAGCCTATAACTTAACCAGTTAACATAACAAGAAGGTGCAACCTATAATGTTATAGTGGAAA
1 TTTCAGCCTAAAACTTAACAAGTTAACATAACAACAAGGTGCAACCTATAATGTTATAAT-GAAA
* * *
96209 CCATGTTTGTTTTACT-TTTT-GATAATATACACT-G
65 CCAAGTTTATTTTA-TATTTTCCATAATATACA-TGG
* * *
96243 TTTCAGCCTAAAACTTAACAAGTTAACCTAAGAACAAGGTGCAACTTATAATGTTATCAAAT-AA
1 TTTCAGCCTAAAACTTAACAAGTTAACATAACAACAAGGTGCAACCTATAATGTTAT--AATGAA
*
96307 ATCAAGTTTATTTTATATTTTCCATAATATACATGG
64 ACCAAGTTTATTTTATATTTTCCATAATATACATGG
96343 TTTCA
1 TTTCA
96348 TGGGTCAATA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
98 1 0.01
99 70 0.79
100 16 0.18
101 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.36
Consensus pattern (99 bp):
TTTCAGCCTAAAACTTAACAAGTTAACATAACAACAAGGTGCAACCTATAATGTTATAATGAAAC
CAAGTTTATTTTATATTTTCCATAATATACATGG
Found at i:97044 original size:12 final size:12
Alignment explanation
Indices: 97027--97055 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
97017 ATATTGATAT
97027 CATAAAAGTGAG
1 CATAAAAGTGAG
97039 CAT-AAAGTGAG
1 CATAAAAGTGAG
97050 CATAAA
1 CATAAA
97056 TTGAAAGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.52, C:0.10, G:0.21, T:0.17
Consensus pattern (12 bp):
CATAAAAGTGAG
Found at i:99242 original size:99 final size:98
Alignment explanation
Indices: 99063--99250 Score: 227
Period size: 99 Copynumber: 1.9 Consensus size: 98
99053 CCCTATAACA
* * * * * *
99063 TAAACGGTTAACAATATAAGCAGGCTCTACATGTATTGTTATAAATATAATCCTGTTTTGTCTTA
1 TAAACGGTTAACAAAATAAGAAGACACTACATGTATTGTTATAAATATAATCATGTTTTCTCTTA
*
99128 CATAATCATAGTAAAAAAGGTTTCACACACAACT
66 CATAATCATAATAAAAAA-GTTTCACACACAACT
* * *
99162 TAAACGGTTAGCAAAATAAGAAGACACTACTTGTATTGTTATAAATTTACA-CATGTTTTCTCTT
1 TAAACGGTTAACAAAATAAGAAGACACTACATGTATTGTTATAAATATA-ATCATGTTTTCTCTT
* *
99226 ACA-ATTTCTTAATAAAAAAGTTTCA
65 ACATA-ATCATAATAAAAAAGTTTCA
99251 AACTTATCAT
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
98 7 0.09
99 67 0.89
100 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (98 bp):
TAAACGGTTAACAAAATAAGAAGACACTACATGTATTGTTATAAATATAATCATGTTTTCTCTTA
CATAATCATAATAAAAAAGTTTCACACACAACT
Found at i:99306 original size:100 final size:98
Alignment explanation
Indices: 99188--99729 Score: 290
Period size: 100 Copynumber: 5.4 Consensus size: 98
99178 TAAGAAGACA
99188 CTACTTGTATTGTTATAAATTTACACATGTTTTCTCTTACAATTTCTTAATAAAAAAGTTTCAAA
1 CTACTTGTATTGTTATAAATTTA-ACATGTTTT-TCTTACAATTTCTTAATAAAAAAGTTTCAAA
*
99253 CTTATCATGTAAATGGTTGACAATA-AAAAAAGAAG
64 CATATCATGTAAATGGTTGACAATATAAAAAAG-AG
* * * * * ** * * *
99288 CTACTTGTGTTGTTATAAATATAACGTGTTTAGTCTTATACGTTCATAATGAAAAAGATTTCACA
1 CTACTTGTATTGTTATAAATTTAACATGTTT-TTCTTACAATTTCTTAATAAAAAAG-TTTCAAA
* * * *
99353 CATATAACT-TAAATGATTAACAATATAAAAAAGTG
64 CATATCA-TGTAAATGGTTGACAATATAAAAAAGAG
* * * * * **
99388 CTACTTGTATTGTTATGAATTTAAACCTGTTTTTCTTACAATGTATTAGTAAAAAAAGGTTTTGA
1 CTACTTGTATTGTTATAAATTT-AACATGTTTTTCTTACAATTTCTTAAT-AAAAAA-GTTTCAA
* * * *
99453 ACATATCACGTAAATGGTTGATACTATAAAAAAGCG
63 ACATATCATGTAAATGGTTGACAATATAAAAAAGAG
* * * * ** * * * *
99489 TTAC-CGATATTGTTATAAATATAACCTTGTTTTGTCTTAC-ATAACCGTCATGAAAAATGTTTG
1 CTACTTG-TATTGTTATAAATTTAA-CATGTTTT-TCTTACAAT-TTCTTAAT-AAAAAAGTTTC
* *** * **
99552 ACACATAT-A-GCTTAAAACAATTAACAATATAAAAAAGTT
61 AAACATATCATG--T-AAATGGTTGACAATATAAAAAAGAG
* * * * * * * * *
99591 CTAGC-TATAATGTTATAAATTTAAACTTGTTTATGTTATAGTTTCTTAATAATAAAGGTTTCTA
1 CTA-CTTGTATTGTTATAAATTT-AACATGTTTTTCTTACAATTTCTTAATAA-AAAAGTTTCAA
* * * **
99655 TCATATCAAGTAAATAGTTGACAATATAAGGAAGCA-
63 ACATATCATGTAAATGGTTGACAATATAAAAAAG-AG
* *
99691 CTACTTGTATTGTTATAAATATAACCCTGTTTTGTCTTA
1 CTACTTGTATTGTTATAAATTTAA-CATGTTTT-TCTTA
99730 TATATCCATA
Statistics
Matches: 325, Mismatches: 92, Indels: 49
0.70 0.20 0.11
Matches are distributed among these distances:
99 30 0.09
100 123 0.38
101 113 0.35
102 55 0.17
103 4 0.01
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.38
Consensus pattern (98 bp):
CTACTTGTATTGTTATAAATTTAACATGTTTTTCTTACAATTTCTTAATAAAAAAGTTTCAAACA
TATCATGTAAATGGTTGACAATATAAAAAAGAG
Found at i:99481 original size:101 final size:98
Alignment explanation
Indices: 99188--99529 Score: 271
Period size: 101 Copynumber: 3.4 Consensus size: 98
99178 TAAGAAGACA
* * * *
99188 CTACTTGTATTGTTATAAATTTACACATGTTTTCTCTTACAATTTCTTA-ATAAAAAAGTTTCAA
1 CTACTTGTATTGTTATAAATATA-ACCTGTTTTCTCTTACAATGT-TTATA-AAAAAAGTTTTAA
* *
99252 ACTTATCATGTAAATGGTTGACAATA-AAAAAAGAAG
63 ACATATCACGTAAATGGTTGACAATATAAAAAAG-AG
* * ** * * * * *
99288 CTACTTGTGTTGTTATAAATATAACGTGTTTAGTCTTA-TACGTTCATAATGAAAAAGATTTCAC
1 CTACTTGTATTGTTATAAATATAACCTGTTTTCTCTTACAATGTTTATAA--AAAAAG-TTTTAA
* * * * *
99352 ACATATAACTTAAATGATTAACAATATAAAAAAGTG
63 ACATATCACGTAAATGGTTGACAATATAAAAAAGAG
* * *
99388 CTACTTGTATTGTTATGAATTTAAACCTGTTTT-TCTTACAATGTATTAGTAAAAAAAGGTTTTG
1 CTACTTGTATTGTTATAAATAT-AACCTGTTTTCTCTTACAATGT-TTA-TAAAAAAA-GTTTTA
* * *
99452 AACATATCACGTAAATGGTTGATACTATAAAAAAGCG
62 AACATATCACGTAAATGGTTGACAATATAAAAAAGAG
* * *
99489 TTAC-CGATATTGTTATAAATATAACCTTGTTTTGTCTTACA
1 CTACTTG-TATTGTTATAAATATAACC-TGTTTTCTCTTACA
99530 TAACCGTCAT
Statistics
Matches: 190, Mismatches: 39, Indels: 24
0.75 0.15 0.09
Matches are distributed among these distances:
97 3 0.02
98 3 0.02
99 18 0.09
100 76 0.40
101 77 0.41
102 10 0.05
103 3 0.02
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (98 bp):
CTACTTGTATTGTTATAAATATAACCTGTTTTCTCTTACAATGTTTATAAAAAAAGTTTTAAACA
TATCACGTAAATGGTTGACAATATAAAAAAGAG
Found at i:99662 original size:202 final size:202
Alignment explanation
Indices: 99095--99767 Score: 517
Period size: 202 Copynumber: 3.4 Consensus size: 202
99085 GGCTCTACAT
* * * * *
99095 GTATTGTTATAAATATAATCCTGTTTTGTCTTACATAATCAT-AGTAAAAAAGGTTTCACAC--A
1 GTATTGTTATAAATATAACCCTGTTTTGTCTTACATAACCGTCA-TGAAAAAGATTTCACACATA
* ** * * * ** * * * *
99157 CAACTTAAACGGTTAGCAAAAT-AAGAAGACACTACTTGTATTGTTATAAATTTACACATGTTTT
65 TAACTTAAACAATTAACAATATAAAAAAG-TGCTACTTATAATGTTATAAATTTAAACCTG-TTT
* * * ** * * *
99221 CTCTTACAATTTCTTAAT-AAAAAA-GTTTCAAACTTATCATGTAAATGGTTGACAATA-AAAAA
128 ATCTTACAATGTATTAATAAAAAAAGGTTTTGAACATATCAAGTAAATAGTTGACAATATAAAAA
* *
99283 AGAAGCTACTT
193 AGCA-CTACTC
* * * * **** * *
99294 GTGTTGTTATAAATATAA-CGTGTTTAGTCTTATACGTTCATAATGAAAAAGATTTCACACATAT
1 GTATTGTTATAAATATAACCCTGTTTTGTCTTACATAACCGTCATGAAAAAGATTTCACACATAT
** * * * *
99358 AACTTAAATGATTAACAATATAAAAAAGTGCTACTTGTATTGTTATGAATTTAAACCTGTTTTTC
66 AACTTAAACAATTAACAATATAAAAAAGTGCTACTTATAATGTTATAAATTTAAACCTGTTTATC
* * * * *
99423 TTACAATGTATTAGTAAAAAAAGGTTTTGAACATATCACGTAAATGGTTGATACTATAAAAAAGC
131 TTACAATGTATTAATAAAAAAAGGTTTTGAACATATCAAGTAAATAGTTGACAATATAAAAAAGC
**
99488 GTTAC-C
196 ACTACTC
* *
99494 GATATTGTTATAAATATAACCTTGTTTTGTCTTACATAACCGTCATGAAAAATG-TTTGACACAT
1 G-TATTGTTATAAATATAACCCTGTTTTGTCTTACATAACCGTCATGAAAAA-GATTTCACACAT
* * *
99558 ATAGCTTAAAACAATTAACAATATAAAAAAGTTCTAGC-TATAATGTTATAAATTTAAACTTGTT
64 ATAACTT-AAACAATTAACAATATAAAAAAGTGCTA-CTTATAATGTTATAAATTTAAACCTGTT
* * * * * * * *
99622 TATGTTATAGTTTCTTAAT-AATAAAGGTTTCT-ATCATATCAAGTAAATAGTTGACAATATAAG
127 TATCTTACAATGTATTAATAAAAAAAGGTTT-TGAACATATCAAGTAAATAGTTGACAATATAAA
* *
99685 GAAGCACTACTT
191 AAAGCACTACTC
* * * * * * * *
99697 GTATTGTTATAAATATAACCCTGTTTTGTCTTATATATCCATAATGACACATATTTCACATATAT
1 GTATTGTTATAAATATAACCCTGTTTTGTCTTACATAACCGTCATGAAAAAGATTTCACACATAT
99762 AACTTA
66 AACTTA
99768 CACGGTTGAC
Statistics
Matches: 377, Mismatches: 82, Indels: 28
0.77 0.17 0.06
Matches are distributed among these distances:
198 32 0.08
199 35 0.09
200 51 0.14
201 52 0.14
202 144 0.38
203 62 0.16
204 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.37
Consensus pattern (202 bp):
GTATTGTTATAAATATAACCCTGTTTTGTCTTACATAACCGTCATGAAAAAGATTTCACACATAT
AACTTAAACAATTAACAATATAAAAAAGTGCTACTTATAATGTTATAAATTTAAACCTGTTTATC
TTACAATGTATTAATAAAAAAAGGTTTTGAACATATCAAGTAAATAGTTGACAATATAAAAAAGC
ACTACTC
Found at i:104516 original size:6 final size:6
Alignment explanation
Indices: 104505--104562 Score: 55
Period size: 6 Copynumber: 9.7 Consensus size: 6
104495 TAAGGTAAAG
* * ** *
104505 AAAATA AAAAT- AAAATG AAGATA AATAGGA TAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AA-AATA AAAATA AAAATA AAAATA
104553 AAAATA AAAA
1 AAAATA AAAA
104563 AAGATATAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
5 5 0.12
6 34 0.83
7 2 0.05
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:104537 original size:40 final size:41
Alignment explanation
Indices: 104453--104530 Score: 106
Period size: 40 Copynumber: 1.9 Consensus size: 41
104443 ATGAAAATAA
*
104453 ATAAGTTAAAAAACAATAAAAAAACAAATGAAATAAATGAG
1 ATAAGGTAAAAAACAATAAAAAAACAAATGAAATAAATGAG
* *
104494 ATAAGGTAAAGAA-AATAAAAATA-AAATGAAGATAAAT
1 ATAAGGTAAAAAACAATAAAAAAACAAATGAA-ATAAAT
104531 AGGATAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 7 0.21
40 15 0.45
41 11 0.33
ACGTcount: A:0.68, C:0.03, G:0.12, T:0.18
Consensus pattern (41 bp):
ATAAGGTAAAAAACAATAAAAAAACAAATGAAATAAATGAG
Found at i:104552 original size:36 final size:34
Alignment explanation
Indices: 104433--104555 Score: 104
Period size: 36 Copynumber: 3.3 Consensus size: 34
104423 TTAGAAGGGA
* *
104433 AAAAATAATAATGAAAATAAATAAGTTAAAAAACAAT
1 AAAAATAA-AATG-AAATAAATAGGATAAAAAA-AAT
*
104470 AAAAAAACAAATGAAATAAAT-GAGATAAGGTAAAGAAAAT
1 AAAAATA-AAATGAAATAAATAG-GAT-A---AAA-AAAAT
104510 AAAAATAAAATGAAGATAAATAGGATAAATAAAAAT
1 AAAAATAAAATGAA-ATAAATAGGATAAA-AAAAAT
104546 AAAAATAAAA
1 AAAAATAAAA
104556 ATAAAAAAAG
Statistics
Matches: 72, Mismatches: 4, Indels: 21
0.74 0.04 0.22
Matches are distributed among these distances:
36 27 0.38
37 12 0.17
38 1 0.01
39 8 0.11
40 21 0.29
41 3 0.04
ACGTcount: A:0.71, C:0.02, G:0.10, T:0.18
Consensus pattern (34 bp):
AAAAATAAAATGAAATAAATAGGATAAAAAAAAT
Found at i:104577 original size:22 final size:22
Alignment explanation
Indices: 104534--104578 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
104524 GATAAATAGG
*
104534 ATAAATAAAAATAAAAATAAAA
1 ATAAATAAAAATAAAAAGAAAA
*
104556 ATAAA-AAAAGATATAAAGAAAA
1 ATAAATAAAA-ATAAAAAGAAAA
104578 A
1 A
104579 AGAAAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (22 bp):
ATAAATAAAAATAAAAAGAAAA
Found at i:104581 original size:76 final size:77
Alignment explanation
Indices: 104433--104586 Score: 174
Period size: 76 Copynumber: 2.0 Consensus size: 77
104423 TTAGAAGGGA
* *
104433 AAAAATAATAATGAAAATAAATAAGTTAAAAAACAATAAAAAAACAAATGAAATAAATGAGATAA
1 AAAAATAATAATGAAAATAAATAAGATAAAAAACAATAAAAAAACAAATGAAATAAAAGAGATAA
**
104498 GGTAAAGAAAAT
66 GAAAAAGAAAAT
* * *
104510 AAAAATAA-AATGAAGATAAATAGGATAAATAAA-AATAAAAATAA-AAAT-AAA-AAAAGATAT
1 AAAAATAATAATGAAAATAAATAAGATAAA-AAACAATAAAAA-AACAAATGAAATAAAAGAGAT
104570 AAAGAAAAAAGAAAAT
64 -AAG-AAAAAGAAAAT
104586 A
1 A
104587 TATACGTTAA
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
74 7 0.11
75 6 0.09
76 40 0.61
77 13 0.20
ACGTcount: A:0.72, C:0.01, G:0.10, T:0.17
Consensus pattern (77 bp):
AAAAATAATAATGAAAATAAATAAGATAAAAAACAATAAAAAAACAAATGAAATAAAAGAGATAA
GAAAAAGAAAAT
Found at i:104727 original size:22 final size:23
Alignment explanation
Indices: 104674--104725 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 23
104664 ATAAACAAAG
*
104674 TAATATAAAAAAGAAATAAAATAA
1 TAATA-AAAAAACAAATAAAATAA
104698 TAATAAAACAAACAAATAAAAATAA
1 TAATAAAA-AAACAAAT-AAAATAA
104723 TAA
1 TAA
104726 AATAATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 3 0.12
24 12 0.48
25 10 0.40
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (23 bp):
TAATAAAAAAACAAATAAAATAA
Found at i:104799 original size:16 final size:15
Alignment explanation
Indices: 104780--104829 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
104770 ATAATATTGT
104780 ATAAAAAATAAAAAAA
1 ATAAAAAAT-AAAAAA
*
104796 ATAAGAAAT---AAA
1 ATAAAAAATAAAAAA
104808 ATAAAAAATAAGAAAA
1 ATAAAAAATAA-AAAA
104824 ATAAAA
1 ATAAAA
104830 GGATTAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 11 0.39
16 17 0.61
ACGTcount: A:0.82, C:0.00, G:0.04, T:0.14
Consensus pattern (15 bp):
ATAAAAAATAAAAAA
Found at i:104810 original size:21 final size:21
Alignment explanation
Indices: 104784--104829 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
104774 TATTGTATAA
*
104784 AAAATAAAAAA-AATAAGAAAT
1 AAAATAAAAAATAAGAA-AAAT
104805 AAAATAAAAAATAAGAAAAAT
1 AAAATAAAAAATAAGAAAAAT
104826 AAAA
1 AAAA
104830 GGATTAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.83, C:0.00, G:0.04, T:0.13
Consensus pattern (21 bp):
AAAATAAAAAATAAGAAAAAT
Found at i:104815 original size:28 final size:28
Alignment explanation
Indices: 104780--104853 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
104770 ATAATATTGT
104780 ATAAAAAATAAAAAAAATAAGAA-ATAAA
1 ATAAAAAATAAAAAAAATAA-AAGATAAA
* *
104808 ATAAAAAATAAGAAAAATAAAAGGATTAA
1 ATAAAAAATAAAAAAAATAAAA-GATAAA
* *
104837 ATTAAAAAGAAAAAAAA
1 ATAAAAAATAAAAAAAA
104854 ATTAGGGGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 2 0.05
28 19 0.49
29 18 0.46
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (28 bp):
ATAAAAAATAAAAAAAATAAAAGATAAA
Found at i:106187 original size:67 final size:66
Alignment explanation
Indices: 105983--106196 Score: 223
Period size: 67 Copynumber: 3.2 Consensus size: 66
105973 CAGATGATGC
* ** * * * * *
105983 TTCAAGAGAAGTTGTCTCAAAAGAGACATAATTCGTTTCAAGGGAAACGATCTCAATGATATTTG
1 TTCAAGAGAA-ATGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAATTTCAAAGAT-TTTG
106048 TTGT
64 -TGT
* * * * * *
106052 TTCATGAGAAATGGTCTCATGGGAAACAAAATTTTGTTTTAAGGGAAATAAATTCAAAGATTTTG
1 TTCAAGAGAAAT-GTCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAACAATTTCAAAGATTTTG
106117 TGT
64 TGT
* *
106120 TTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAAGGAAACAATTTCAAAGGTTTTGT
1 TTCAAGAGAAA-TGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAATTTCAAAGATTTTGT
106185 GT
65 GT
106187 TTCAAG-GAAA
1 TTCAAGAGAAA
106197 ACAATTTCAA
Statistics
Matches: 120, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
66 4 0.03
67 37 0.31
68 30 0.25
69 27 0.22
70 22 0.18
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (66 bp):
TTCAAGAGAAATGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAATTTCAAAGATTTTGTG
T
Found at i:106258 original size:34 final size:31
Alignment explanation
Indices: 106153--106277 Score: 173
Period size: 31 Copynumber: 3.9 Consensus size: 31
106143 AGACAAAATT
106153 TGTTTCAA-AGGAAACAATTTCAAAGGTTTTG
1 TGTTTCAAGA-GAAACAATTTCAAAGGTTTTG
106184 TGTTTCAAG-GAAAACAATTTCAAAGGTTTTG
1 TGTTTCAAGAG-AAACAATTTCAAAGGTTTTG
* *
106215 TGTTTCAAGAGAAACATTTTCAAAGGTTTTTTTA
1 TGTTTCAAGAGAAACAATTTCAAAGG---TTTTG
106249 TGTTTCAAGAGAAACAATTTCAAAGGTTT
1 TGTTTCAAGAGAAACAATTTCAAAGGTTT
106278 CTTTTTGTGT
Statistics
Matches: 85, Mismatches: 3, Indels: 12
0.85 0.03 0.12
Matches are distributed among these distances:
30 1 0.01
31 54 0.64
32 1 0.01
34 29 0.34
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.38
Consensus pattern (31 bp):
TGTTTCAAGAGAAACAATTTCAAAGGTTTTG
Found at i:106277 original size:65 final size:62
Alignment explanation
Indices: 106153--106277 Score: 173
Period size: 65 Copynumber: 2.0 Consensus size: 62
106143 AGACAAAATT
*
106153 TGTTTCAAAGGAAACAATTTCAAAGGTTTTGTGTTTCAAGGAAAACAATTTCAAAGGTTTTG
1 TGTTTCAAAGGAAACAATTTCAAAGGTTTTATGTTTCAAGGAAAACAATTTCAAAGGTTTTG
*
106215 TGTTTC-AAGAGAAACATTTTCAAAGGTTTTTTTATGTTTCAA-GAGAAACAATTTCAAAGGTTT
1 TGTTTCAAAG-GAAACAATTTCAAAGG---TTTTATGTTTCAAGGA-AAACAATTTCAAAGGTTT
106278 CTTTTTGTGT
Statistics
Matches: 56, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
61 3 0.05
62 21 0.38
64 2 0.04
65 30 0.54
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.38
Consensus pattern (62 bp):
TGTTTCAAAGGAAACAATTTCAAAGGTTTTATGTTTCAAGGAAAACAATTTCAAAGGTTTTG
Found at i:106335 original size:37 final size:37
Alignment explanation
Indices: 106285--106355 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
106275 TTTCTTTTTG
* *
106285 TGTTTCAAGAGAAACTGTCTCAAGGGAGGCAAAATTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTT
106322 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
106356 ACTTCCAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (37 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTT
Found at i:106457 original size:66 final size:65
Alignment explanation
Indices: 106365--106533 Score: 187
Period size: 66 Copynumber: 2.6 Consensus size: 65
106355 AACTTCCAAA
* ** * *
106365 AGAAACTGTCTCAAGGGAGATGAAATTTGTTT-AATGTAAAACATATTCAAAGATTTTTGTTTCA
1 AGAAACTATCTCAAGGGAGAAAAAATTTGTTTCAA-GGAAAACATATTCAAAG-TTTATGTTTCA
106429 AG
64 AG
* * ** * * * *
106431 AGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATATTTTCAATGTTTATGTTTCAAG
1 AGAAACTATCTCAAGGGAGAAAAAATTTGTTTCAAGGAAAACATATTCAAAGTTTATGTTTCAAG
106496 AGAAACTATCTCAAGGGAGAAAAAATTTTGTTTCAAGG
1 AGAAACTATCTCAAGGGAGAAAAAA-TTTGTTTCAAGG
106534 GAACCTATCT
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
65 35 0.41
66 48 0.56
67 2 0.02
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.32
Consensus pattern (65 bp):
AGAAACTATCTCAAGGGAGAAAAAATTTGTTTCAAGGAAAACATATTCAAAGTTTATGTTTCAAG
Found at i:106542 original size:37 final size:37
Alignment explanation
Indices: 106487--106574 Score: 113
Period size: 37 Copynumber: 2.4 Consensus size: 37
106477 TCAATGTTTA
* * *
106487 TGTTTCAAGAGAAACTATCTCAAGGGAGAAAAAATTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGAAAAAACTT
* *
106524 TGTTTCAAGGGAACCTATCTCAAGAGAGACAAAACTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGAAAAAACTT
**
106561 CATTTCAAGGGAAA
1 TGTTTCAAGGGAAA
106575 TTTTTTTAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.25
Consensus pattern (37 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGAAAAAACTT
Found at i:106542 original size:102 final size:103
Alignment explanation
Indices: 106419--106637 Score: 361
Period size: 103 Copynumber: 2.1 Consensus size: 103
106409 ATTCAAAGAT
106419 TTTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAA-TTCATTTCAAGGGAAATATTTTCAATG
1 TTTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAACTTCATTTCAAGGGAAATATTTTCAATG
106483 TTTATGTTTCAAGAGAAACTATCTCAAGGGAGAAAAAA
66 TTTATGTTTCAAGAGAAACTATCTCAAGGGAGAAAAAA
* * * *
106521 TTTTGTTTCAAGGGAACCTATCTCAAGAGAGACAAAACTTCATTTCAAGGGAAATTTTTTTAATG
1 TTTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAACTTCATTTCAAGGGAAATATTTTCAATG
* **
106586 TTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACGAAA
66 TTTATGTTTCAAGAGAAACTATCTCAAGGGAGAAAAAA
106624 -TTTGTTTCAAGAGA
1 TTTTGTTTCAAGAGA
106638 GACGAGATTT
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
102 48 0.44
103 60 0.56
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.32
Consensus pattern (103 bp):
TTTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAACTTCATTTCAAGGGAAATATTTTCAATG
TTTATGTTTCAAGAGAAACTATCTCAAGGGAGAAAAAA
Found at i:106633 original size:21 final size:21
Alignment explanation
Indices: 106609--106658 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
106599 AGAAACTGTC
*
106609 TCAAGGGAGACGAAATTTGTT
1 TCAAGAGAGACGAAATTTGTT
*
106630 TCAAGAGAGACGAGATTTGTT
1 TCAAGAGAGACGAAATTTGTT
106651 TCAAGAGA
1 TCAAGAGA
106659 AACTATCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.36, C:0.10, G:0.28, T:0.26
Consensus pattern (21 bp):
TCAAGAGAGACGAAATTTGTT
Found at i:106862 original size:52 final size:52
Alignment explanation
Indices: 106784--106886 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
106774 ATCTTGAGTA
*
106784 AAATAAATCTTCTTCCGAGTAAAACAGTCTCAAGTGAGACAAAGTCTGTTTG
1 AAATAAATCTTCTTCCGAGTAAAACAGTCTCAAGTGAGACAAAGTATGTTTG
* *
106836 AAATAAATCTTGTTTCGAGTAAAACAGTCTCAAGTGAGACAAAGTATGTTT
1 AAATAAATCTTCTTCCGAGTAAAACAGTCTCAAGTGAGACAAAGTATGTTT
106887 TAAGAAAAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (52 bp):
AAATAAATCTTCTTCCGAGTAAAACAGTCTCAAGTGAGACAAAGTATGTTTG
Found at i:108365 original size:183 final size:183
Alignment explanation
Indices: 108057--108410 Score: 602
Period size: 183 Copynumber: 1.9 Consensus size: 183
108047 ATCAGGTTTA
108057 ACTGAAGGGTTCGTCTCATCACAAAGTCTTCAGACTGACAAAAGCAGTGGAGCAAACACCGAATT
1 ACTGAAGGGTTCGTCTCATCACAAAGTCTTCAGACTGACAAAAGCAGTGGAGCAAACACCGAATT
* ** *
108122 GCCAAGTTTTTGAGCAATTCCATGGTTTGAATGCAATCTATTCATAAAGCCAGGGCTTTCGAGTT
66 GCCAAGTGTCCGAGCAATTCCATGGTTTAAATGCAATCTATTCATAAAGCCAGGGCTTTCGAGTT
*
108187 TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATC
131 TCCTCTATAACCAATTGACTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATC
** *
108240 ACTGAAGGGTTCGTCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATT
1 ACTGAAGGGTTCGTCTCATCACAAAGTCTTCAGACTGACAAAAGCAGTGGAGCAAACACCGAATT
* *
108305 GCCAAGTGTCCGAGCAGTGT-CATGGTTTAAATGTAATCTATTCATAAAGCCAGGGCTTTCGAGT
66 GCCAAGTGTCCGAGCAAT-TCCATGGTTTAAATGCAATCTATTCATAAAGCCAGGGCTTTCGAGT
108369 TTCCTCTATAACCAATTGACTTAGTGGAATAGCTCAGCTTTA
130 TTCCTCTATAACCAATTGACTTAGTGGAATAGCTCAGCTTTA
108411 CGGATTTAAT
Statistics
Matches: 160, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
183 159 0.99
184 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (183 bp):
ACTGAAGGGTTCGTCTCATCACAAAGTCTTCAGACTGACAAAAGCAGTGGAGCAAACACCGAATT
GCCAAGTGTCCGAGCAATTCCATGGTTTAAATGCAATCTATTCATAAAGCCAGGGCTTTCGAGTT
TCCTCTATAACCAATTGACTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATC
Found at i:111537 original size:7 final size:7
Alignment explanation
Indices: 111519--111547 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
111509 AATAAATAAA
111519 TTAAAA-
1 TTAAAAT
111525 TTAAAAT
1 TTAAAAT
111532 TTAAAAT
1 TTAAAAT
111539 TTAAAAT
1 TTAAAAT
111546 TT
1 TT
111548 TCGCATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
TTAAAAT
Found at i:112047 original size:40 final size:40
Alignment explanation
Indices: 111964--112040 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
111954 ATGAAAATAA
*
111964 ATAAGTTAAAAAAAATAAAAAAACAAATGAAATAAATGAG
1 ATAAGGTAAAAAAAATAAAAAAACAAATGAAATAAATGAG
* *
112004 ATAAGGTAAAGAAAATAAAAATA-AAATGAAGATAAAT
1 ATAAGGTAAAAAAAATAAAAAAACAAATGAA-ATAAAT
112041 AGGATAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 7 0.21
40 26 0.79
ACGTcount: A:0.69, C:0.01, G:0.12, T:0.18
Consensus pattern (40 bp):
ATAAGGTAAAAAAAATAAAAAAACAAATGAAATAAATGAG
Found at i:112137 original size:2 final size:2
Alignment explanation
Indices: 112130--112168 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
112120 ATTATAATAA
112130 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
112169 AATAAGTATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:112237 original size:22 final size:23
Alignment explanation
Indices: 112190--112244 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
112180 ATAAACAAAG
*
112190 TAATATAAAAAAGAAATAAAATAA
1 TAATA-AAAAAACAAATAAAATAA
112214 TAATAAAACAAACAAAT-AAA-AA
1 TAATAAAA-AAACAAATAAAATAA
112236 TAATAAAAA
1 TAATAAAAA
112245 TAATAAAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 1 0.03
22 10 0.34
23 6 0.21
24 12 0.41
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.18
Consensus pattern (23 bp):
TAATAAAAAAACAAATAAAATAA
Found at i:112341 original size:20 final size:20
Alignment explanation
Indices: 112302--112345 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
112292 TATTATATAA
*
112302 AAAATAAAAAAATAAGAAAT
1 AAAATAAAAAAATAAAAAAT
112322 AAAATAAAAAAA-AGAAAAAT
1 AAAATAAAAAAATA-AAAAAT
112342 AAAA
1 AAAA
112346 GGATTAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.11
Consensus pattern (20 bp):
AAAATAAAAAAATAAAAAAT
Found at i:112353 original size:29 final size:26
Alignment explanation
Indices: 112298--112370 Score: 76
Period size: 27 Copynumber: 2.6 Consensus size: 26
112288 ATAATATTAT
112298 ATAAAAAATAAAAAAATAAGAAATAAA
1 ATAAAAAA-AAAAAAATAAGAAATAAA
112325 ATAAAAAAAAGAAAAATAA-AAGGATTAAA
1 ATAAAAAAAA-AAAAATAAGAA--A-TAAA
*
112354 TTAAAAAGAAAAAAAAT
1 ATAAAAA-AAAAAAAAT
112371 TAGGGGTGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
26 4 0.10
27 16 0.40
28 1 0.03
29 16 0.40
30 3 0.08
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (26 bp):
ATAAAAAAAAAAAAATAAGAAATAAA
Found at i:115861 original size:31 final size:32
Alignment explanation
Indices: 115800--115861 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 32
115790 TGAAGAAATG
**
115800 AGAGAGAGAAAAGAAAAAGTTAAAGTTAAAAA
1 AGAGAGAGAAAAGAAAAAGTTAAAAATAAAAA
115832 AGAGAGA-AAAAGAAAAAGTTAAAAATAAAA
1 AGAGAGAGAAAAGAAAAAGTTAAAAATAAAA
115862 GAGAAATGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 21 0.75
32 7 0.25
ACGTcount: A:0.69, C:0.00, G:0.19, T:0.11
Consensus pattern (32 bp):
AGAGAGAGAAAAGAAAAAGTTAAAAATAAAAA
Found at i:123925 original size:21 final size:21
Alignment explanation
Indices: 123899--123942 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
123889 AAGCAAAATT
123899 GTGCATCGACGCACTGCTACA
1 GTGCATCGACGCACTGCTACA
123920 GTGCATCGACGCACTGCTACA
1 GTGCATCGACGCACTGCTACA
123941 GT
1 GT
123943 ACTGCTACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (21 bp):
GTGCATCGACGCACTGCTACA
Found at i:124742 original size:31 final size:31
Alignment explanation
Indices: 124720--125077 Score: 547
Period size: 31 Copynumber: 11.5 Consensus size: 31
124710 ATACATTCCA
* * *
124720 AAGAACCTAGGTAATCAGTCCATATGTCCCA
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
*
124751 AAGAACATAGGTAAACAGTCCATATGTCCCA
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
*
124782 AAGAACATAGGTAAACAGTCCATATGTCCCA
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
* * *
124813 AAGAACTTAGGTAAAC-GACCCATATATCCCG
1 AAGAACATAGGTAAACAG-TCCATATGTCCCG
*
124844 AAGAACATAGGTAAATAGTCCATATGTCCCG
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
* * * * *
124875 AAGAACATAGTTAAACAATCCATATATCTCA
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
124906 AAGAACATAGGTAAACAGTCCATATGTCCCG
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
* * *
124937 AAGAACATAGGTAAACAGTCCATCTATCCTG
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
124968 AAGAACATAGGTAAACAGTCCATATGTCCCG
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
124999 AAGAACATAGGTAAACAGTCCATATGTCCCG
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
125030 AAGAACATAGGTAAACAGTCCATATGTCCCG
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
125061 AAGAACATAGGTAAACA
1 AAGAACATAGGTAAACA
125078 CTCGACCCTT
Statistics
Matches: 298, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
30 1 0.00
31 296 0.99
32 1 0.00
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (31 bp):
AAGAACATAGGTAAACAGTCCATATGTCCCG
Found at i:129063 original size:21 final size:21
Alignment explanation
Indices: 129039--129083 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
129029 AAGCAAAATT
129039 GTGCATCG-ATGCACTACTACA
1 GTGCATCGAAT-CACTACTACA
*
129060 GTGCATCGAATCACTGCTACA
1 GTGCATCGAATCACTACTACA
129081 GTG
1 GTG
129084 ACTTTCGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (21 bp):
GTGCATCGAATCACTACTACA
Found at i:129885 original size:31 final size:31
Alignment explanation
Indices: 129847--130207 Score: 515
Period size: 31 Copynumber: 11.6 Consensus size: 31
129837 TCCATAGATT
* * *
129847 CCGAAGAACCTAGGTAATCAGTCTATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
* *
129878 CCGAAGAACATAGGTAAACAATCTATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
* *
129909 CCGAAGAACATAGGTAAACATTTCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
* *
129940 CCGAAGAACATAGGTAAACGGCCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
* *
129971 CCAAAGAACATAGGTAAATAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
* *
130002 CCGAAGAACATAGATAAACAGTTCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
* * * *
130033 CCAAAGAACATAGGTAAACAATTCATATATC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
* *
130064 CCGAAGAACATAGGTAAACAATCCATATATC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
130095 CCGAAGAACATAGGTAAACAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
*
130126 CCGAAGAACATAGGTAAACAGTCCATATATC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
130157 CCGAAGAACATAGGTAAACAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
* **
130188 CCAAAGATTATAGGTAAACA
1 CCGAAGAACATAGGTAAACA
130208 CTCGTCCCTT
Statistics
Matches: 299, Mismatches: 31, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 299 1.00
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.21
Consensus pattern (31 bp):
CCGAAGAACATAGGTAAACAGTCCATATGTC
Found at i:132253 original size:16 final size:16
Alignment explanation
Indices: 132215--132246 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
132205 TTTGGAAGCT
*
132215 CTCATATATTCATGTG
1 CTCATATATTCACGTG
132231 CTCATATATTCACGTG
1 CTCATATATTCACGTG
132247 TGCATATGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.41
Consensus pattern (16 bp):
CTCATATATTCACGTG
Found at i:132760 original size:21 final size:21
Alignment explanation
Indices: 132734--132774 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
132724 CCGTAAATAG
*
132734 TGCTACAGTGCATCGATGCAT
1 TGCTACAGTGCACCGATGCAT
132755 TGCTACAGTGCACCGATGCA
1 TGCTACAGTGCACCGATGCA
132775 CTAACATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (21 bp):
TGCTACAGTGCACCGATGCAT
Found at i:133632 original size:31 final size:31
Alignment explanation
Indices: 133594--133953 Score: 605
Period size: 31 Copynumber: 11.6 Consensus size: 31
133584 TCCATAGATA
* * *
133594 CCGAAGAACCTAGGTAATCAGTCAATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
*
133625 CCGAAGAACATAGGTAAACAGTCTATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
133656 CCGAAGAACATAGGTAAACAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
* *
133687 CCGAAGAACATAGGTAAACGGCCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
*
133718 CCGAAGAACATAGGTAAATAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
*
133749 CCGAAGAACATAGGTAAACAGTTCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
*
133780 CCGAAGAACATAGGTAAACAGTCCATATATC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
*
133811 CCGAAGAACATAGGTAAACAGTCCATATATC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
133842 CCGAAGAACATAGGTAAACAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
* *
133873 CCGAAGAACATAGGTAAACAATCCATATATC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
133904 CCGAAGAACATAGGTAAACAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
133935 CCGAA-AACATAGGTAAACA
1 CCGAAGAACATAGGTAAACA
133954 CTCGACCCTT
Statistics
Matches: 311, Mismatches: 18, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
30 14 0.05
31 297 0.95
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (31 bp):
CCGAAGAACATAGGTAAACAGTCCATATGTC
Found at i:141583 original size:24 final size:24
Alignment explanation
Indices: 141556--141677 Score: 156
Period size: 24 Copynumber: 5.1 Consensus size: 24
141546 TCGATTTGAT
141556 TTCTGATCTGATACTTGACATGGA
1 TTCTGATCTGATACTTGACATGGA
141580 TTCTGATCTGATA-TCTGACATGGA
1 TTCTGATCTGATACT-TGACATGGA
*
141604 TTCTGATCTGATACTTGACTTGGA
1 TTCTGATCTGATACTTGACATGGA
* *
141628 TTCTGATCTGTTACTTGACCTGGA
1 TTCTGATCTGATACTTGACATGGA
* * * * *
141652 TTTTGATATGATGCCTGACCTGGA
1 TTCTGATCTGATACTTGACATGGA
141676 TT
1 TT
141678 ATGTTTTGAT
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 1 0.01
24 86 0.98
25 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.40
Consensus pattern (24 bp):
TTCTGATCTGATACTTGACATGGA
Found at i:143977 original size:101 final size:99
Alignment explanation
Indices: 143684--143987 Score: 255
Period size: 98 Copynumber: 3.1 Consensus size: 99
143674 TATTTTTTTG
* * * * *
143684 TACATAACCATAA-GAAAAAGGTTTTAGACATATAACTTAAACT-GTGGACAATATAAGAAGGAA
1 TACATAACCATAATGAAAAAGGTTTCAAACATATAAATTAAA-TGGTTGA-AATATAAAAAGG-A
* *
143747 CTACTTGTATTGTTATAAATTTCAACTTGTTTTCTCT
63 CTACATGTATTGTTATAAATTTAAACTTGTTTTCTCT
** * * * * *
143784 TACAGT-TTCTTAAT-AAAAAGGTTTCAAACTTAT-CATATAAACGGTT--TATAGTAAAAAGGA
1 TACA-TAACCATAATGAAAAAGGTTTCAAACATATAAAT-TAAATGGTTGAAATA-TAAAAAGGA
* * **
143844 GCTACATGTATTGTTATAAATATAAGCTTGTTTAGTCT
63 -CTACATGTATTGTTATAAATTTAAACTTGTTTTCTCT
* *
143882 TACATAAGCATAATGAAAAAGGTTTCACACATATAAATTAAATGGTTGAAAATATAAAAAGGCAC
1 TACATAACCATAATGAAAAAGGTTTCAAACATATAAATTAAATGGTTG-AAATATAAAAAGG-AC
* * *
143947 TATC-TGTATTGCTATAAATTTAAACATGTTTTTTCT
64 TA-CATGTATTGTTATAAATTTAAACTTGTTTTCTCT
143983 TACAT
1 TACAT
143988 TGTATTAATA
Statistics
Matches: 158, Mismatches: 32, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
97 5 0.03
98 47 0.30
99 26 0.16
100 32 0.20
101 43 0.27
102 5 0.03
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.36
Consensus pattern (99 bp):
TACATAACCATAATGAAAAAGGTTTCAAACATATAAATTAAATGGTTGAAATATAAAAAGGACTA
CATGTATTGTTATAAATTTAAACTTGTTTTCTCT
Found at i:144174 original size:203 final size:199
Alignment explanation
Indices: 143711--144568 Score: 746
Period size: 203 Copynumber: 4.3 Consensus size: 199
143701 AAGGTTTTAG
* * * * ** * *
143711 ACATATAACTTAAACTGTGGACAATATAAGAAGGAACTACTTGTATTGTTATAAATTTCAACTTG
1 ACATATAACTTACACGGTTGACAATATAAAAAGGCGCTACCTGTATTGTTATAAATTTAAACTTG
* * ** *
143776 TTTTCTCTTACAGTT-TCTTAAT-AA-AAAGGTTTCAAACTTATCATATAAACGGTT--TA-TAG
66 TTTT-TTTTACA-TTGT-TTAATAAATAAAGGTTTCAAACATATCACGTAAACGGTTGACACTA-
* * * * * * * * * **
143835 TAAAAAGGAGCTACATGTATTGTTATAAATATAAGCTTGTTTAGTCTTACATAAGCATAATGAAA
127 TAAAAAGGCGCAAC-TTTATTGTTATAAATAAAACCCTATTTTGTCATACAT-TTCATAATGAAA
* *
143900 AAGGTTTCAC
190 CATGTTTCAC
* * * * * * * *
143910 ACATATAAATTAAATGGTTGAAAATATAAAAAGGCACTATCTGTATTGCTATAAATTTAAACATG
1 ACATATAACTTACACGGTTGACAATATAAAAAGGCGCTACCTGTATTGTTATAAATTTAAACTTG
* * * **
143975 TTTTTTCTTACATTGTATTAATAAAAAAAAGGTTTCAAACATATCACATAAGCAATTGACACTAT
66 TTTTTT-TTACATTGT-TTAAT-AAATAAAGGTTTCAAACATATCACGTAAACGGTTGACACTAT
* * * * *
144040 AAAAAGGCGCAACTTGTATTGTTATATATATAACCCTATTTTCTCATCCATTTTATAATGAAACA
128 AAAAAGGCGCAACTT-TATTGTTATAAATAAAACCCTATTTTGTCATACATTTCATAATGAAACA
*
144105 TGTTTCGC
192 TGTTTCAC
* * * ** *
144113 ACATATAACTCACACGGTTGTCAATATAAAAAGGCGCAACCTAAATTGTTATAAGTTTAAACTTG
1 ACATATAACTTACACGGTTGACAATATAAAAAGGCGCTACCTGTATTGTTATAAATTTAAACTTG
* * *
144178 TTTTCTGTTACATTTTCTTAAT-AATAAAGGTTTCAAACACATCACGTAAACGGTTGACACTATA
66 TTTT-TTTTACATTGT-TTAATAAATAAAGGTTTCAAACATATCACGTAAACGGTTGACACTATA
* ** * *
144242 AAAAGGCGCTACCTTTATTGTTATAAATAAAAACCCTATTTTGTTTTACATGTCCATAATGACAC
129 AAAAGGCGC-AACTTTATTGTTATAAAT-AAAACCCTATTTTGTCATACAT-TTCATAATGAAAC
***
144307 ATGTTTTGT
191 ATGTTTCAC
* *
144316 ACATATAACTTACACGGTTGACAATATAAAAAGGCGCTACTTGTGTTGTTATAAATTTAAACTTG
1 ACATATAACTTACACGGTTGACAATATAAAAAGGCGCTACCTGTATTGTTATAAATTTAAACTTG
* ** * * *
144381 TTTTCTTTTAGA--GTTTCGTACAATAAAGGTTTCAATCATATCATGTAAACGGTTGACATTATA
66 TTTT-TTTTACATTGTTTAATA-AATAAAGGTTTCAAACATATCACGTAAACGGTTGACACTATA
* * ** * * * *
144444 AAAATGCGCTACCAATATTGTTACAAATAAAACTCT-TTTTGTCGTACATGTCATTAATGAAACA
129 AAAAGGCGC-AACTTTATTGTTATAAATAAAACCCTATTTTGTCATACATTTCA-TAATGAAACA
*
144508 TGTTTCAT
192 TGTTTCAC
* *
144516 ACATATAACTTACACGGTTGACAATATAAAAAGACGCTACATGTATTGTTATA
1 ACATATAACTTACACGGTTGACAATATAAAAAGGCGCTACCTGTATTGTTATA
144569 TAAAATCGCG
Statistics
Matches: 539, Mismatches: 104, Indels: 31
0.80 0.15 0.05
Matches are distributed among these distances:
198 3 0.01
199 70 0.13
200 79 0.15
201 67 0.12
202 108 0.20
203 169 0.31
204 41 0.08
205 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.36
Consensus pattern (199 bp):
ACATATAACTTACACGGTTGACAATATAAAAAGGCGCTACCTGTATTGTTATAAATTTAAACTTG
TTTTTTTTACATTGTTTAATAAATAAAGGTTTCAAACATATCACGTAAACGGTTGACACTATAAA
AAGGCGCAACTTTATTGTTATAAATAAAACCCTATTTTGTCATACATTTCATAATGAAACATGTT
TCAC
Found at i:144262 original size:101 final size:100
Alignment explanation
Indices: 143692--144568 Score: 511
Period size: 100 Copynumber: 8.7 Consensus size: 100
143682 TGTACATAAC
* * * * * * * * **
143692 CATAAGAAAAAGGTTTTAGACATATAACTTAAACTGTGGACAATATAAGAAGGAACTA-CTTGTA
1 CATAATAAAAAGGTTTCAAACATATCACATAAACGGTTGACAATATAAAAAGGCGCTACCTT-TA
* *
143756 TTGTTATAAATTTCAACTTGTTTTCTCTTACAGTTT
65 TTGTTATAAATTTAAACTTGTTTTCTCTTACATTTT
* * * * * * *
143792 CTTAATAAAAAGGTTTCAAACTTATCATATAAACGGTT---TATAGTAAAAAGGAGCTACATGTA
1 CATAATAAAAAGGTTTCAAACATATCACATAAACGGTTGACAATA-TAAAAAGGCGCTACCTTTA
* * ** ***
143854 TTGTTATAAATATAAGCTTGTTTAGTCTTACATAAG
65 TTGTTATAAATTTAAACTTGTTTTCTCTTACATTTT
* * * * * * *
143890 CATAATGAAAAAGGTTTCACACATAT-AAATTAAATGGTTGAAAATATAAAAAGGCACTATCTGT
1 CATAAT-AAAAAGGTTTCAAACATATCACA-TAAACGGTTGACAATATAAAAAGGCGCTACCTTT
* * *
143954 ATTGCTATAAATTTAAACATGTTTTTTCTTACATTGTATT
64 ATTGTTATAAATTTAAACTTGTTTTCTCTTACA-T-T-TT
* * * ** * *
143994 AATAAAAAAAAGGTTTCAAACATATCACATAAGCAATTGACACTATAAAAAGGCGC-AACTTGTA
1 CATAATAAAAAGGTTTCAAACATATCACATAAACGGTTGACAATATAAAAAGGCGCTACCTT-TA
* * * * * * *
144058 TTGTTATATATATAACCCTATTTTCTCATCCATTTT
65 TTGTTATAAATTTAAACTTGTTTTCTCTTACATTTT
* * ** * * * * **
144094 -ATAATGAAACATGTTTCGCACATATAAC-TCACACGGTTGTCAATATAAAAAGGCGCAACCTAA
1 CATAAT-AAAAAGGTTTCAAACATATCACAT-AAACGGTTGACAATATAAAAAGGCGCTACCTTT
* *
144157 ATTGTTATAAGTTTAAACTTGTTTTCTGTTACATTTT
64 ATTGTTATAAATTTAAACTTGTTTTCTCTTACATTTT
* * * *
144194 CTTAATAATAAAGGTTTCAAACACATCACGTAAACGGTTGACACTATAAAAAGGCGCTACCTTTA
1 CATAATAA-AAAGGTTTCAAACATATCACATAAACGGTTGACAATATAAAAAGGCGCTACCTTTA
** * * * * * *
144259 TTGTTATAAATAAAAACCCTATTTTGTTTTACATGTC
65 TTGTTATAAATTTAAA-CTTGTTTTCTCTTACATTTT
* * * *** * * *
144296 CATAATGACACATGTTTTGTACATATAACTTACACGGTTGACAATATAAAAAGGCGCTA-CTTGT
1 CATAAT-AAAAAGGTTTCAAACATATCACATAAACGGTTGACAATATAAAAAGGCGCTACCTT-T
* * * *
144360 GTTGTTATAAATTTAAACTTGTTTTCTTTTAGAGTTT
64 ATTGTTATAAATTTAAACTTGTTTTCTCTTACATTTT
* * * ** * * **
144397 CGTACA-ATAAAGGTTTCAATCATATCATGTAAACGGTTGACATTATAAAAATGCGCTACCAATA
1 CATA-ATAAAAAGGTTTCAAACATATCACATAAACGGTTGACAATATAAAAAGGCGCTACCTTTA
* * * * *
144461 TTGTTACAAA-TAAAACTCT-TTTTGTCGTACA-TGT
65 TTGTTATAAATTTAAACT-TGTTTTCTCTTACATTTT
* * * * * * * * *
144495 CATTAATGAAACATGTTTCATACATATAACTTACACGGTTGACAATATAAAAAGACGCTACATGT
1 CA-TAAT-AAAAAGGTTTCAAACATATCACATAAACGGTTGACAATATAAAAAGGCGCTACCTTT
144560 ATTGTTATA
64 ATTGTTATA
144569 TAAAATCGCG
Statistics
Matches: 576, Mismatches: 174, Indels: 54
0.72 0.22 0.07
Matches are distributed among these distances:
97 3 0.01
98 51 0.09
99 47 0.08
100 197 0.34
101 124 0.22
102 84 0.15
103 64 0.11
104 6 0.01
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.36
Consensus pattern (100 bp):
CATAATAAAAAGGTTTCAAACATATCACATAAACGGTTGACAATATAAAAAGGCGCTACCTTTAT
TGTTATAAATTTAAACTTGTTTTCTCTTACATTTT
Found at i:144453 original size:100 final size:97
Alignment explanation
Indices: 143721--144455 Score: 335
Period size: 101 Copynumber: 7.3 Consensus size: 97
143711 ACATATAACT
* * * ** * *
143721 TAAACTGTGGACAATATAAGAAGGAACTACTTGTATTGTTATAAATTTCAACTTGTTTTCTCTTA
1 TAAACGGTTGACAATATAAAAAGGCGCTACTT-TATTGTTATAAATTTAAACTTGTTTTCTTTTA
* * *
143786 CAGTTTCT-TAATAAAAAGGTTTCAAACTTATCATA
65 CA-TTTCTATAAT--AAAGGTTTCAATCATATCATG
* * * * * ** *
143821 TAAACGGTT---TATAGTAAAAAGGAGCTACATGTATTGTTATAAATATAAGCTTGTTTAGTCTT
1 TAAACGGTTGACAATA-TAAAAAGGCGCTAC-TTTATTGTTATAAATTTAAACTTGTTTTCTTTT
** *
143883 ACATAAGC-ATAATGAAAAAGGTTTCACA-CATATAAAT-
64 ACAT-TTCTATAAT---AAAGGTTTCA-ATCATAT-CATG
* * * * * *
143920 TAAATGGTTGAAAATATAAAAAGGCACTATCTGTATTGCTATAAATTTAAACATGTTTT-TTCTT
1 TAAACGGTTGACAATATAAAAAGGCGCTA-CTTTATTGTTATAAATTTAAACTTGTTTTCTT-TT
* * * **
143984 ACATTGTATTAATAAAAAAAAGGTTTCAAACATATCACA
64 ACATT-T-CT-AT--AATAAAGGTTTCAATCATATCATG
* ** * * * * * * * ** *
144023 TAAGCAATTGACACTATAAAAAGGCGCAACTTGTATTGTTATATATATAACCCTATTTTCTCATC
1 TAAACGGTTGACAATATAAAAAGGCGCTACTT-TATTGTTATAAATTTAAACTTGTTTTCTTTTA
* * *
144088 CATTT-TATAATGAAACATGTTTCGCA-CATATAACT-
65 CATTTCTATAAT--AA-AGGTTTC-AATCATATCA-TG
* * * * ** * *
144123 CACACGGTTGTCAATATAAAAAGGCGCAACCTAAATTGTTATAAGTTTAAACTTGTTTTCTGTTA
1 TAAACGGTTGACAATATAAAAAGGCGCTA-CTTTATTGTTATAAATTTAAACTTGTTTTCTTTTA
* * *
144188 CATTTTCTTAATAATAAAGGTTTCAAACACATCACG
65 CA-TTTC-T-ATAATAAAGGTTTCAATCATATCATG
* ** * * *
144224 TAAACGGTTGACACTATAAAAAGGCGCTACCTTTATTGTTATAAATAAAAACCCTATTTTGTTTT
1 TAAACGGTTGACAATATAAAAAGGCGCTA-CTTTATTGTTATAAATTTAAA-CTTGTTTTCTTTT
* * * ** *
144289 ACATGTCCATAATGACACATGTTT-TGTACATATAACT-
64 ACATTTCTATAAT-A-A-AGGTTTCAAT-CATATCA-TG
* *
144326 TACACGGTTGACAATATAAAAAGGCGCTACTTGTGTTGTTATAAATTTAAACTTGTTTTCTTTTA
1 TAAACGGTTGACAATATAAAAAGGCGCTACTT-TATTGTTATAAATTTAAACTTGTTTTCTTTTA
* *
144391 GAGTTTCGTACAATAAAGGTTTCAATCATATCATG
65 CA-TTTC-TATAATAAAGGTTTCAATCATATCATG
* *
144426 TAAACGGTTGACATTATAAAAATGCGCTAC
1 TAAACGGTTGACAATATAAAAAGGCGCTAC
144456 CAATATTGTT
Statistics
Matches: 471, Mismatches: 119, Indels: 90
0.69 0.17 0.13
Matches are distributed among these distances:
97 6 0.01
98 46 0.10
99 35 0.07
100 110 0.23
101 119 0.25
102 79 0.17
103 66 0.14
104 8 0.02
106 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (97 bp):
TAAACGGTTGACAATATAAAAAGGCGCTACTTTATTGTTATAAATTTAAACTTGTTTTCTTTTAC
ATTTCTATAATAAAGGTTTCAATCATATCATG
Found at i:144566 original size:403 final size:401
Alignment explanation
Indices: 143711--144568 Score: 893
Period size: 403 Copynumber: 2.1 Consensus size: 401
143701 AAGGTTTTAG
* * * * * * *
143711 ACATATAACTTAAACTGTGGACAATATAAGAAGGA-ACTACTTGTATTGTTATAAATTTCAACTT
1 ACATATAACTTACACGGTTGACAATATAA-AAAGACGCTACATGTATTGTTATAAATTTAAACTT
** * *
143775 GTTTTCTCTTACAGTTTCTTAATAAAAAGGTTTCAAACTTATCATATAAACGGTTTATAGTAAAA
65 GTTTTCTCTTACAGTTTCTTAATAAAAAGGTTTCAAACACATCACATAAACGGTTCATAGTAAAA
* * * * *
143840 AGGAGCTACATGTATTGTTATAAATATAAGCTTGTTTAGTCTTACATAAGCATAATGAAAAAGGT
130 AGGAGCTACATGTATTGTTATAAATAAAACCCTATTTAGTCTTACATAACCATAATGAAAAAGGT
*
143905 TTCACACATATAAATTAAATGGTTGAAAATATAAAAAGGCACTATCTGTATTGCTATAAATTTAA
195 TTCACACATATAAATTAAACGGTTGAAAATATAAAAAGGCACTATCTGTATTGCTATAAATTTAA
*
143970 ACATGTTTTTTCTTACATTGTATTAATAAAAAAAAGGTTTCAAACATATCACATAAGCAATTGAC
260 ACATGTTTTTTCTTACA-TGTATTAATAAAAAAAAGGTTTCAAACATATCACATAAACAATTGAC
*** * * * * * *
144035 ACTATAAAAAGGCGCAACTTGTATTGTTATATATATAACCCTATTTTCTCATCCATTTTATAATG
324 ACTATAAAAAGGCGCAACCAATATTGTTACAAATAAAACCCTATTTTCTCATACATGTCATAATG
*
144100 AAACATGTTTCGC
389 AAACATGTTTCAC
* * * * * ** *
144113 ACATATAACTCACACGGTTGTCAATATAAAAAGGCGCAACCTAAATTGTTATAAGTTTAAACTTG
1 ACATATAACTTACACGGTTGACAATATAAAAAGACGCTACATGTATTGTTATAAATTTAAACTTG
* * *
144178 TTTTCTGTTACATTTTCTTAATAATAAAGGTTTCAAACACATCACGTAAACGGTTGACACTA-TA
66 TTTTCTCTTACAGTTTCTTAATAA-AAAGGTTTCAAACACATCACATAAACGGTT--CA-TAGTA
* * * * * ** * *
144242 AAAAGGCGCTACCTTTATTGTTATAAATAAAAACCCTATTTTGTTTTACATGTCCATAATGACAC
127 AAAAGGAGCTACATGTATTGTTATAAAT-AAAACCCTATTTAGTCTTACATAACCATAATGAAAA
* *** * * * * * *
144307 ATGTTTTGTACATATAACTTACACGGTTGACAATATAAAAAGGCGCTA-CTTGTGTTGTTATAAA
191 AGGTTTCACACATATAAATTAAACGGTTGAAAATATAAAAAGGCACTATC-TGTATTGCTATAAA
* * ** * * * ** **
144371 TTTAAACTTGTTTTCTT-TTAGA-GT-TTCGTACAATAAAGGTTTCAATCATATCATGTAAACGG
255 TTTAAACATGTTTT-TTCTTACATGTATTAATAAAAAAAAGGTTTCAAACATATCACATAAACAA
* * * * * *
144433 TTGACATTATAAAAATGCGCTACCAATATTGTTACAAATAAAACTCT-TTTTGTCGTACATGTCA
319 TTGACACTATAAAAAGGCGCAACCAATATTGTTACAAATAAAACCCTATTTTCTCATACATGTCA
*
144497 TTAATGAAACATGTTTCAT
384 -TAATGAAACATGTTTCAC
144516 ACATATAACTTACACGGTTGACAATATAAAAAGACGCTACATGTATTGTTATA
1 ACATATAACTTACACGGTTGACAATATAAAAAGACGCTACATGTATTGTTATA
144569 TAAAATCGCG
Statistics
Matches: 365, Mismatches: 82, Indels: 17
0.79 0.18 0.04
Matches are distributed among these distances:
401 3 0.01
402 81 0.22
403 153 0.42
404 2 0.01
405 29 0.08
406 95 0.26
407 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.36
Consensus pattern (401 bp):
ACATATAACTTACACGGTTGACAATATAAAAAGACGCTACATGTATTGTTATAAATTTAAACTTG
TTTTCTCTTACAGTTTCTTAATAAAAAGGTTTCAAACACATCACATAAACGGTTCATAGTAAAAA
GGAGCTACATGTATTGTTATAAATAAAACCCTATTTAGTCTTACATAACCATAATGAAAAAGGTT
TCACACATATAAATTAAACGGTTGAAAATATAAAAAGGCACTATCTGTATTGCTATAAATTTAAA
CATGTTTTTTCTTACATGTATTAATAAAAAAAAGGTTTCAAACATATCACATAAACAATTGACAC
TATAAAAAGGCGCAACCAATATTGTTACAAATAAAACCCTATTTTCTCATACATGTCATAATGAA
ACATGTTTCAC
Done.