genome.fa.s3930.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003930.1 Hibiscus syriacus cultivar Beakdansim tig00008494_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85520

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266--296	16	1.9	16	93	0	53	70	0	12	16	1.16
7728--7798	26	2.8	25	85	10	99	45	14	12	28	1.81
7739--7798	24	2.4	26	91	8	106	45	15	11	28	1.81
17474--17949	43	11.1	43	89	2	636	31	23	26	18	1.97
20449--20506	18	3.2	17	88	9	80	13	20	48	17	1.81
22494--22969	43	11.1	43	89	3	656	32	24	25	18	1.97
25443--25476	15	2.3	15	94	0	59	26	26	32	14	1.95
25471--25531	18	3.4	17	84	6	77	14	21	44	19	1.86
25489--25513	13	1.9	13	100	0	50	12	24	48	16	1.79
27544--28061	43	12.1	43	90	3	685	31	24	26	17	1.97
27544--28061	86	6.0	86	90	2	765	31	24	26	17	1.97
27544--28061	129	4.0	129	92	1	799	31	24	26	17	1.97
30564--30633	18	4.2	18	75	17	78	15	21	44	18	1.87
30553--30630	31	2.5	30	87	6	111	17	21	43	16	1.88
30579--30615	13	2.8	13	83	0	56	13	21	45	18	1.84
37277--37302	12	2.2	12	100	0	52	42	7	0	50	1.31
37811--37884	20	3.7	20	80	3	94	40	18	22	17	1.91
37828--37895	21	3.3	21	79	4	93	41	17	25	16	1.89
37811--37903	41	2.3	41	98	0	177	39	17	24	18	1.91
37900--38006	20	5.3	20	81	6	108	30	26	18	24	1.98
37889--38020	41	3.2	41	77	6	142	34	24	16	24	1.95
38194--38237	22	2.0	22	95	0	79	20	45	15	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38501--38538	20	1.9	20	88	0	58	13	15	21	50	1.78
40174--40348	20	9.8	19	74	15	92	43	22	22	12	1.85
40223--40259	14	2.6	14	100	0	74	40	24	27	8	1.83
40199--40292	47	2.0	48	89	2	145	38	24	25	11	1.89
40283--40353	19	3.7	19	92	3	115	45	23	19	11	1.83
40236--40348	33	3.2	33	80	7	100	43	25	20	10	1.84
40349--40394	19	2.3	20	85	7	67	8	15	21	54	1.68
40948--41020	20	3.7	20	92	0	119	28	19	28	23	1.98
41029--41082	20	2.7	20	94	0	90	27	18	22	31	1.97
40969--41085	61	1.9	61	83	0	153	25	17	23	33	1.96
41153--41193	21	2.0	21	85	0	55	34	31	17	17	1.93
42159--42289	7	18.9	7	66	13	56	48	24	0	26	1.57
42174--42292	35	3.4	34	83	1	139	47	25	0	26	1.57
42696--42863	84	2.0	83	92	1	282	47	14	14	23	1.81
42861--42895	17	2.1	17	94	0	61	60	8	5	25	1.49
43030--43061	16	2.0	16	93	0	55	28	40	0	31	1.57
43329--43381	27	2.0	25	82	13	63	33	5	0	60	1.20
62744--63035	148	2.0	147	88	0	431	38	6	8	46	1.60
63536--63613	35	2.2	36	86	2	104	34	0	20	44	1.52
66599--66645	21	2.2	21	96	0	85	34	21	10	34	1.88
68913--69047	57	2.3	60	87	5	204	22	11	11	55	1.66
72752--72783	6	5.2	6	96	3	55	46	3	0	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74323--74362	21	1.9	21	84	0	53	55	17	0	27	1.43
77368--77392	3	8.3	3	100	0	50	68	32	0	0	0.90
81160--81215	2	28.5	2	92	3	96	50	1	0	48	1.11
84922--84951	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!