genome.fa.s3931.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003931.1 Hibiscus syriacus cultivar Beakdansim tig00008496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118028

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13850--13908	25	2.4	24	75	8	64	10	20	1	67	1.28
15887--15999	26	4.4	26	81	12	119	46	0	14	38	1.50
15884--16000	51	2.3	51	82	12	134	47	0	14	37	1.51
15915--15993	14	5.9	14	75	19	71	46	0	13	39	1.44
15912--16004	13	7.2	13	70	22	54	46	0	11	41	1.40
15873--16000	26	5.0	25	78	15	118	46	0	14	38	1.51
19037--19079	19	2.3	19	87	0	59	23	23	34	18	1.96
24589--24626	18	2.1	18	95	0	67	15	21	44	18	1.86
24673--24720	19	2.5	19	83	6	62	22	22	37	16	1.94
26675--26718	20	2.3	19	81	14	54	68	11	0	20	1.20
27124--27178	23	2.6	21	75	18	51	34	16	21	27	1.95
34193--34238	22	2.0	23	87	4	67	58	8	0	32	1.28
41939--42007	24	2.7	25	72	16	70	4	14	7	73	1.20
42672--42713	21	2.0	21	85	0	57	52	7	11	28	1.64
43586--43623	20	1.9	20	94	0	67	39	10	26	23	1.87
45342--45414	36	2.0	37	86	5	105	47	4	1	46	1.30
45745--45772	3	9.3	3	100	0	56	32	0	0	67	0.91
45807--45881	21	3.6	21	87	3	98	32	33	22	12	1.91
45918--45971	23	2.3	23	100	0	108	11	53	14	20	1.71
47103--47160	27	2.1	29	81	12	68	41	3	0	55	1.17
47869--47955	28	3.2	26	77	9	68	29	4	1	64	1.21
48417--48508	46	1.9	49	80	10	111	38	13	18	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52814--52880	32	2.1	32	94	0	116	46	20	14	17	1.84
56697--56781	22	3.9	22	90	0	116	37	14	11	36	1.82
57085--57416	123	2.7	121	87	3	495	39	15	20	25	1.91
57331--57689	137	2.6	137	91	1	551	38	15	18	27	1.91
57932--57959	3	9.3	3	100	0	56	32	0	0	67	0.91
57991--58068	21	3.7	21	91	0	129	30	32	26	10	1.90
60619--60732	3	38.0	3	89	0	165	37	1	0	60	1.07
61249--61290	15	2.8	15	89	7	59	76	2	21	0	0.90
61249--61290	20	2.1	20	86	8	59	76	2	21	0	0.90
62100--62137	15	2.5	15	84	12	51	26	0	5	68	1.11
66105--66136	15	2.1	15	94	0	55	25	18	9	46	1.79
73463--73546	19	4.6	17	83	15	89	80	0	17	1	0.77
73464--73547	17	5.0	17	80	15	95	79	0	19	1	0.79
73472--73547	9	8.8	9	74	20	65	80	0	19	0	0.72
74698--75166	83	5.6	84	89	2	732	26	13	22	37	1.91
74703--75168	168	2.8	168	98	1	882	26	13	22	37	1.91
76033--76510	230	2.1	228	90	3	764	38	14	19	28	1.90
76034--76509	114	4.2	113	85	4	641	38	13	19	28	1.90
76829--76869	9	4.2	10	81	15	50	75	2	21	0	0.92
76829--76869	5	8.4	5	79	15	50	75	2	21	0	0.92
76829--76869	14	2.9	14	92	3	64	75	2	21	0	0.92
77680--77717	15	2.4	16	86	4	51	26	0	5	68	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82412--82453	3	14.7	3	90	9	70	69	0	0	30	0.89
82652--83136	134	3.6	134	90	1	726	25	18	30	25	1.98
83152--83233	29	2.8	29	94	0	137	47	15	15	20	1.82
83388--83425	15	2.5	15	91	0	58	50	18	10	21	1.76
83440--83580	58	2.4	57	82	9	171	47	15	9	26	1.77
83436--83629	29	6.5	31	81	8	147	43	13	13	29	1.82
83637--83816	64	2.8	65	82	10	199	43	14	10	31	1.78
83779--83850	37	1.9	37	83	5	92	34	11	12	41	1.78
83729--83910	101	1.8	101	80	4	224	42	12	11	33	1.79
83978--84067	36	2.5	35	87	3	126	35	12	20	32	1.89
84049--84363	108	3.0	105	77	8	332	39	11	15	32	1.84
84767--84815	12	4.1	12	84	7	64	16	2	26	55	1.52
84765--84801	4	9.2	4	90	0	56	18	2	24	54	1.57
90453--90482	16	1.9	15	93	6	51	56	3	0	40	1.16
90601--90649	25	1.9	25	84	12	64	61	10	0	28	1.29
92051--92092	9	4.4	9	83	16	50	73	0	0	26	0.83
94035--94102	32	2.2	32	82	12	79	51	0	0	48	1.00
94128--94178	22	2.3	23	89	3	77	29	19	17	33	1.95
94532--94569	20	1.9	20	84	10	51	50	18	2	28	1.61
95912--95962	22	2.3	22	93	0	84	21	41	13	23	1.89
95912--95969	22	2.7	21	89	5	73	20	41	12	25	1.87
96332--96398	20	3.4	20	91	6	102	11	16	20	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98054--98106	21	2.5	21	78	0	61	18	11	35	33	1.87
98515--98606	21	4.5	21	82	2	107	22	36	18	21	1.95
100087--100167	20	4.1	19	77	4	72	32	23	25	18	1.97
100079--100158	40	2.0	39	85	7	108	35	23	22	18	1.96
100131--100170	19	2.1	19	95	0	71	30	22	30	17	1.97
100166--100262	49	2.0	49	87	0	140	27	22	15	34	1.94
102970--103003	12	2.8	12	95	0	59	14	0	26	58	1.36
103796--103862	20	3.3	20	75	10	64	34	13	22	29	1.92
103796--103986	40	4.8	40	72	16	128	28	13	23	34	1.93
108734--108871	69	2.0	69	100	0	276	34	10	20	34	1.86
112260--112302	18	2.4	18	92	0	68	20	6	0	72	1.08
115868--115941	34	2.2	34	92	0	121	51	10	12	25	1.71

Tables:   1

The End!