genome.fa.s3933.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003933.1 Hibiscus syriacus cultivar Beakdansim tig00008502_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70650

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4759--4813	27	2.0	27	85	3	74	14	20	9	56	1.65
11263--11295	12	2.8	12	95	0	57	3	15	0	81	0.80
14746--14793	23	2.1	23	92	0	78	39	8	18	33	1.81
14705--14871	87	1.9	86	93	3	291	41	9	14	34	1.78
14889--15577	199	3.5	197	80	7	754	31	15	14	39	1.86
19171--19196	12	2.2	12	100	0	52	57	15	0	26	1.38
19183--19875	364	1.9	364	90	1	1122	30	16	14	38	1.89
19537--20029	199	2.5	199	82	4	591	30	16	13	39	1.87
20032--20068	15	2.5	15	90	0	56	40	8	10	40	1.70
20341--20403	11	5.5	11	78	10	72	47	9	6	36	1.62
20327--20401	36	2.1	36	94	0	132	50	10	4	34	1.56
20338--20414	36	2.1	36	87	0	109	49	15	5	29	1.66
21348--21403	9	6.2	9	82	0	67	28	30	1	39	1.67
21348--21403	6	9.3	6	90	0	67	28	30	1	39	1.67
21348--21403	18	3.1	18	89	0	76	28	30	1	39	1.67
22882--24238	200	6.8	200	87	3	1815	33	16	11	38	1.84
24501--24549	19	2.6	19	96	0	89	55	10	2	32	1.45
26107--26181	18	4.2	18	92	0	123	2	40	0	57	1.13
26362--26429	33	2.1	32	97	2	127	25	47	0	27	1.53
26462--26505	21	2.1	21	91	0	70	15	34	9	40	1.79
26589--26620	15	2.1	15	94	0	55	12	59	6	21	1.55
28869--29705	182	4.7	182	85	6	1041	28	17	13	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38046--38082	7	5.3	7	100	0	74	45	0	27	27	1.54
38224--38267	23	1.9	23	85	0	61	22	15	27	34	1.95
38248--38295	21	2.3	21	82	13	55	20	16	27	35	1.94
46241--46320	41	1.9	41	84	2	106	57	7	15	20	1.61
46807--46859	26	2.1	24	83	13	63	52	15	1	30	1.53
54843--54902	29	2.0	30	81	9	70	46	8	15	30	1.74
55998--56106	23	4.7	23	88	0	137	15	23	25	34	1.95
62836--62896	23	2.7	23	81	0	77	16	22	26	34	1.95
63847--63885	21	1.9	20	84	5	51	35	12	15	35	1.86
65902--66233	54	6.2	53	83	6	377	26	18	20	34	1.96
65902--66212	157	2.0	157	86	0	433	27	18	19	34	1.95
69766--69802	15	2.5	15	90	0	56	32	27	21	18	1.97

Tables:   1

The End!