genome.fa.s3934.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003934.1 Hibiscus syriacus cultivar Beakdansim tig00008504_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118641

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5314--5771	120	3.8	120	78	4	436	28	22	26	22	1.99
12455--12553	33	3.1	33	89	2	139	26	15	20	38	1.92
16157--16468	120	2.6	120	87	2	421	25	25	26	21	1.99
24407--24441	6	5.8	6	100	0	70	51	0	48	0	1.00
26564--26601	2	19.0	2	100	0	76	50	0	0	50	1.00
28023--28049	2	13.5	2	100	0	54	48	0	0	51	1.00
29859--29909	23	2.2	23	89	0	75	35	15	13	35	1.87
29868--29913	23	2.0	23	100	0	92	34	13	13	39	1.83
32227--32323	49	2.0	49	87	0	140	47	8	6	38	1.59
32370--32416	4	11.8	4	93	0	67	68	0	4	27	1.08
32841--32963	60	2.0	60	81	3	140	38	13	15	32	1.87
34237--34394	21	7.8	20	72	7	95	38	24	17	19	1.92
34361--34590	20	11.5	20	87	1	237	36	24	19	19	1.94
35273--35319	24	2.0	24	87	8	69	25	14	21	38	1.92
37763--37982	33	6.4	34	81	13	215	45	18	21	14	1.85
37796--37960	19	9.4	19	76	19	189	46	18	21	13	1.83
37824--37982	52	3.0	52	99	0	309	45	16	23	13	1.83
37989--38104	53	2.2	53	96	1	216	14	23	18	43	1.86
38007--38104	19	5.4	19	84	13	143	15	21	17	45	1.84
38202--38259	14	4.4	13	77	10	55	50	20	0	29	1.49
40226--40282	14	3.7	14	77	20	60	45	22	21	10	1.82
40207--40299	33	2.8	33	95	0	168	47	21	20	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40170--40304	19	7.6	19	76	16	128	45	23	19	11	1.82
40300--40428	19	7.3	19	71	17	107	10	17	27	44	1.81
40300--40391	33	2.8	33	90	6	134	8	19	27	44	1.80
40476--41035	93	6.0	93	99	0	1104	46	19	12	21	1.83
42744--42833	14	5.7	14	72	23	72	43	23	24	8	1.82
42736--42850	33	3.5	33	97	0	221	46	20	23	9	1.80
42758--42855	19	5.7	19	71	22	90	43	22	23	10	1.83
42851--42931	33	2.5	33	93	0	135	8	20	22	48	1.77
42907--42984	41	1.9	41	97	0	147	12	25	16	44	1.83
42908--42983	21	3.7	21	83	3	109	11	25	17	46	1.82
43063--43133	33	2.2	33	92	0	115	47	18	22	11	1.80
43315--43369	22	2.5	22	81	0	74	20	16	40	23	1.91
43516--43668	20	7.7	20	85	2	191	18	20	26	33	1.96
43655--43737	21	4.0	21	73	6	78	25	16	24	33	1.96
43635--43733	42	2.4	43	77	11	100	21	18	23	37	1.94
44562--44674	60	1.9	60	85	3	156	39	11	13	35	1.80
47349--47724	184	2.1	180	90	3	585	43	3	8	44	1.53
48262--48331	30	2.3	30	85	7	97	64	2	7	25	1.33
65174--65209	6	6.0	6	96	0	54	55	11	33	0	1.35
67094--67172	37	2.1	37	90	0	122	27	17	17	36	1.93
71099--71123	13	1.9	13	100	0	50	44	0	8	48	1.32
71713--71755	15	2.9	15	75	0	50	41	0	11	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83591--83624	2	17.0	2	100	0	68	50	0	0	50	1.00
86455--86623	45	3.8	45	84	3	205	38	8	23	29	1.84
86493--86561	23	3.0	23	65	12	61	40	4	24	30	1.74
86454--86630	90	2.0	90	85	2	239	38	7	23	29	1.83
86490--86645	45	3.5	43	77	13	163	37	9	23	29	1.87
87044--87174	63	2.1	63	92	2	219	34	26	16	22	1.95
88041--88074	2	17.0	2	100	0	68	50	0	0	50	1.00
88112--88177	2	33.0	2	100	0	132	50	0	0	50	1.00
88550--88610	31	2.0	31	87	6	88	27	3	14	54	1.56
89257--89577	20	15.9	20	76	12	273	38	24	19	17	1.93
89259--89580	40	8.0	40	86	4	400	37	24	19	17	1.93
89314--89580	80	3.3	80	94	2	444	36	25	19	17	1.94
89734--89766	6	5.5	6	100	0	66	33	51	15	0	1.43
89923--90263	20	16.9	20	82	8	361	17	21	24	37	1.94
89923--90261	40	8.4	39	84	9	407	17	21	24	36	1.94
89923--90261	60	5.6	59	88	6	418	17	21	24	36	1.94
90933--90963	15	2.1	15	93	0	53	41	3	41	12	1.59
94384--94494	55	2.0	55	92	0	186	35	14	21	28	1.93
111160--111228	36	1.9	36	85	5	95	47	2	1	47	1.25
116903--116978	35	2.2	35	90	0	116	39	22	1	36	1.63
117372--117617	130	1.9	129	87	5	363	36	15	12	36	1.84

Tables:   1

The End!