genome.fa.s3935.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003935.1 Hibiscus syriacus cultivar Beakdansim tig00008505_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153033

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16--115	21	4.9	21	73	14	68	55	1	3	41	1.22
16--84	20	3.3	20	73	13	59	52	1	4	42	1.30
21--101	42	2.0	40	83	11	101	55	1	3	39	1.25
21--115	40	2.3	42	82	8	108	54	1	3	41	1.23
891--923	15	2.2	15	94	0	57	33	0	0	66	0.92
7373--7430	30	1.9	30	82	6	73	15	10	18	55	1.68
8210--8235	2	13.0	2	100	0	52	0	50	0	50	1.00
11532--11562	3	10.7	3	93	6	55	70	29	0	0	0.87
11771--12040	138	2.0	138	85	1	371	27	16	29	27	1.97
12043--12236	67	2.9	66	82	6	223	43	13	18	24	1.86
12268--12404	67	2.1	66	81	4	159	37	9	17	35	1.82
18497--18597	14	7.8	13	71	16	59	0	18	2	77	0.96
18476--18533	16	3.6	16	80	13	57	0	20	5	74	1.01
18497--18593	12	7.7	12	73	17	72	1	18	3	77	0.96
18493--18593	13	7.6	12	71	17	58	0	18	2	77	0.96
18496--18598	18	5.8	18	72	21	67	0	18	3	76	0.99
23069--23097	12	2.4	12	100	0	58	27	31	10	31	1.90
26492--26594	53	1.9	53	92	0	170	37	7	20	33	1.81
28715--28742	2	14.0	2	100	0	56	50	0	0	50	1.00
33697--33790	49	1.9	49	95	0	170	14	30	19	35	1.92
39781--39818	20	1.9	20	100	0	76	31	21	23	23	1.98
41335--41402	23	3.0	23	84	4	84	19	25	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44199--44371	17	9.4	19	69	17	80	70	2	9	17	1.24
44298--44344	23	2.0	23	84	8	60	74	2	8	14	1.15
44315--44393	10	8.3	10	73	15	53	72	1	11	15	1.19
44314--44385	20	3.7	18	76	18	65	69	1	13	15	1.26
44391--44423	10	3.3	10	87	12	50	78	9	9	3	1.05
44573--44640	26	2.6	25	79	9	66	76	4	7	11	1.13
45332--45389	23	2.4	23	77	5	62	17	8	24	50	1.74
55605--55777	85	2.0	85	95	0	310	38	18	21	20	1.93
56766--56821	27	2.0	27	83	10	69	44	3	12	39	1.60
56829--56864	2	18.0	2	100	0	72	50	0	0	50	1.00
59813--59899	33	2.6	33	88	3	129	11	9	35	43	1.73
69185--69261	20	3.8	20	94	0	136	41	20	18	19	1.90
69248--69354	20	5.3	20	88	0	151	30	25	18	25	1.98
69188--69319	40	3.3	40	83	6	135	35	23	19	21	1.96
70196--70249	24	2.2	24	93	0	90	20	18	20	40	1.91
72664--72737	20	3.7	19	86	13	105	35	24	21	18	1.96
72709--72804	33	2.8	33	85	3	129	43	19	22	13	1.86
72987--73023	14	2.6	14	86	0	56	48	21	0	29	1.50
74260--74303	21	2.3	19	88	11	63	27	13	31	27	1.94
74794--74862	20	3.5	20	91	0	111	36	24	20	18	1.95
74931--75020	33	2.7	34	78	3	110	16	16	20	46	1.84
76891--77010	20	6.4	19	74	13	97	43	24	17	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76888--77010	53	2.2	56	88	8	180	44	23	17	14	1.85
77356--77409	22	2.5	22	87	6	74	25	12	38	22	1.90
77597--77709	20	5.7	20	92	0	190	19	17	21	41	1.90
86827--86871	20	2.3	20	92	3	74	35	8	15	40	1.79
86835--86878	19	2.2	20	84	4	54	40	13	11	34	1.81
88503--88891	42	9.3	42	93	0	661	20	20	23	35	1.95
89606--89742	21	6.6	21	83	8	172	23	22	23	30	1.99
89582--89722	62	2.3	62	92	2	230	24	21	20	32	1.98
89587--89725	21	6.7	21	80	13	121	24	21	20	33	1.97
96231--96433	101	2.0	100	88	6	304	33	16	16	33	1.91
98525--98592	37	1.9	34	82	14	84	39	14	4	41	1.66
98613--98837	38	5.9	38	80	5	215	28	16	16	39	1.90
98802--99136	62	5.5	62	83	3	383	28	22	14	34	1.93
98945--99047	33	3.2	33	66	25	85	24	25	15	34	1.94
99145--99818	89	7.6	89	87	0	891	31	21	18	29	1.97
99806--100250	166	2.7	165	84	2	570	35	22	17	24	1.95
99806--100267	83	5.6	83	81	1	509	35	22	16	24	1.95
100269--100660	102	3.9	101	81	6	407	27	17	21	33	1.95
100291--100658	203	1.8	204	82	2	472	28	16	21	33	1.95
100856--100884	3	9.7	3	100	0	58	31	0	0	68	0.89
101051--101334	55	5.7	47	70	14	149	28	19	19	32	1.97
101043--101432	102	3.9	101	84	3	471	27	19	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101043--101432	203	1.9	203	84	2	514	27	19	20	32	1.97
101630--101660	12	2.7	12	95	5	55	22	0	0	77	0.77
101626--101660	15	2.4	15	95	4	63	22	0	0	77	0.78
102859--102918	2	30.0	2	100	0	120	50	0	0	50	1.00
105807--105890	29	2.9	29	83	0	96	13	29	39	17	1.88
107992--108096	2	55.0	2	70	12	60	0	57	0	41	1.05
107992--108072	21	4.2	18	77	13	65	1	60	0	38	1.05
107992--108095	19	5.4	19	78	10	86	0	56	0	42	1.05
107992--108052	21	3.0	21	90	4	90	0	62	0	37	0.96
108001--108110	39	2.9	35	80	11	103	0	58	0	40	1.04
115321--115421	42	2.5	40	84	10	143	53	1	0	43	1.18
119373--119401	2	14.5	2	100	0	58	51	0	0	48	1.00
123163--123220	2	29.5	2	92	3	100	48	0	1	50	1.11
127022--127046	3	8.3	3	100	0	50	0	0	32	68	0.90
127744--127785	14	2.9	15	82	7	50	78	4	7	9	1.08
129453--129478	9	2.9	9	100	0	52	42	0	0	57	0.98
130058--130097	21	1.9	21	84	0	53	27	0	17	55	1.43
130851--130919	32	2.2	32	86	5	95	24	8	14	52	1.70
131639--131670	6	5.2	6	96	3	55	50	0	3	46	1.17
135382--135518	60	2.3	60	91	1	222	55	10	10	22	1.66
137776--137825	21	2.4	21	93	0	91	34	12	20	34	1.89
140806--140903	36	2.8	35	81	3	115	43	24	1	30	1.61

Tables:   1

The End!