genome.fa.s3936.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003936.1 Hibiscus syriacus cultivar Beakdansim tig00008506_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166361

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1387--1508	43	2.8	43	92	2	201	22	16	28	31	1.96
2511--2549	11	3.5	11	82	6	51	0	12	2	84	0.72
2514--2548	17	1.9	19	88	11	56	0	14	2	82	0.77
6091--6153	23	2.8	22	85	7	90	15	23	26	33	1.95
11617--11662	2	23.0	2	90	0	74	45	0	4	50	1.21
18966--19005	21	1.9	21	89	0	62	15	25	35	25	1.94
29739--29807	30	2.4	30	81	13	74	68	1	7	23	1.23
29857--29893	2	18.0	2	94	5	65	48	0	2	48	1.15
29943--30003	13	4.5	13	76	17	54	63	1	1	32	1.13
29936--30007	26	2.6	27	75	20	69	63	2	1	31	1.17
33245--33278	2	17.0	2	100	0	68	50	0	0	50	1.00
36305--36339	14	2.5	14	100	0	70	28	22	31	17	1.96
42434--42475	20	2.1	20	90	0	66	54	16	16	11	1.70
42499--42554	6	9.3	6	96	0	103	0	14	50	35	1.43
42632--42675	20	2.2	20	87	0	61	13	18	13	54	1.71
42664--42959	20	14.5	20	77	7	157	18	22	19	39	1.93
42662--42855	40	4.7	40	81	5	235	20	25	17	36	1.94
42672--42855	83	2.2	83	93	0	305	20	26	17	35	1.95
42909--42959	19	2.6	20	90	3	77	15	17	23	43	1.88
46122--46168	23	2.0	23	95	0	85	29	19	4	46	1.68
55818--55930	4	28.2	4	100	0	226	24	0	24	50	1.50
56669--56752	39	2.2	39	82	4	98	42	2	40	14	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65820--65859	21	1.9	21	94	0	71	17	20	20	42	1.89
65815--65867	21	2.5	21	81	0	70	20	22	20	35	1.96
65857--65912	20	2.8	20	94	0	94	37	16	21	25	1.93
65876--65967	40	2.3	40	83	3	105	31	23	20	23	1.98
65896--65982	20	4.3	20	92	0	138	28	26	20	24	1.99
66162--66206	22	2.0	22	91	0	72	22	44	15	17	1.86
66172--66214	22	2.0	22	90	0	68	25	41	13	18	1.88
66603--66713	20	5.7	20	86	3	109	15	16	22	45	1.84
66611--66706	20	4.8	20	88	1	113	13	17	22	45	1.84
68432--68481	18	2.8	18	96	0	91	34	18	6	42	1.74
68629--68676	20	2.4	20	85	0	69	35	27	18	18	1.95
68719--68774	20	2.8	20	94	0	94	19	19	25	35	1.95
69275--69379	21	5.0	21	74	3	95	20	37	19	22	1.95
69272--69382	42	2.6	42	78	5	118	20	37	18	22	1.94
70535--70629	20	5.1	20	74	14	94	25	16	22	35	1.95
70800--70834	18	1.9	18	94	0	61	17	2	25	54	1.57
73098--73164	24	2.8	24	93	0	116	41	20	19	17	1.90
73985--74083	20	4.9	20	86	0	135	29	20	24	26	1.99
74085--74151	20	3.3	20	100	0	134	25	19	16	38	1.92
74064--74151	40	2.2	40	89	4	133	26	19	17	37	1.93
74148--74193	21	2.2	21	92	0	74	36	19	26	17	1.94
74661--74722	27	2.3	28	79	20	78	41	1	6	50	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75035--75182	3	49.7	3	91	1	244	34	2	0	63	1.06
76630--76668	18	2.2	18	90	9	62	38	2	0	58	1.12
78851--78890	14	2.9	14	84	0	53	27	10	5	57	1.52
83776--83957	83	2.2	83	92	2	303	28	13	21	36	1.91
86553--86607	22	2.5	22	87	0	83	34	14	14	36	1.87
87014--87794	113	6.9	113	91	2	1167	38	13	18	29	1.89
87014--87794	340	2.3	337	89	3	1176	38	13	18	29	1.89
88112--88263	3	50.7	3	91	0	250	34	1	0	63	1.05
89710--89748	18	2.2	18	90	9	62	38	2	0	58	1.12
90556--90646	35	2.6	35	98	0	173	29	15	8	46	1.76
97744--97775	15	2.1	15	94	0	55	43	0	3	53	1.16
98288--98367	35	2.3	35	85	10	101	45	23	1	30	1.61
98603--98698	35	2.7	35	88	3	122	31	1	25	42	1.62
101267--101336	23	3.1	22	77	10	70	68	2	1	27	1.12
101361--101479	44	2.8	44	94	3	215	68	7	4	20	1.32
101361--101478	42	2.7	43	96	2	211	67	7	4	20	1.32
104397--104448	20	2.6	20	96	0	95	50	17	13	19	1.78
104417--104714	113	2.7	112	91	3	485	43	14	16	24	1.86
104587--105033	181	2.5	180	92	2	711	44	13	15	27	1.83
105471--105518	23	2.1	23	92	0	78	41	18	4	35	1.70
108693--108836	72	2.0	72	100	0	288	22	25	22	30	1.99
113388--113470	12	6.7	13	76	6	66	63	2	1	32	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113398--113470	3	24.0	3	74	18	62	64	2	0	32	1.08
113661--113765	40	2.6	40	87	0	138	31	18	26	23	1.97
113692--113775	40	2.1	40	97	0	159	29	16	27	26	1.97
113831--113908	40	2.0	40	86	0	111	21	19	35	23	1.96
113698--114012	133	2.4	134	90	1	481	25	17	31	26	1.97
113934--114083	43	3.6	43	77	13	186	22	18	32	27	1.97
113977--114115	40	3.4	40	77	13	174	23	17	33	25	1.96
113931--114122	83	2.3	83	100	0	384	22	18	32	26	1.97
114234--114307	35	2.1	35	92	5	123	32	12	18	36	1.88
115032--115267	52	4.8	52	67	18	178	39	16	13	30	1.87
115114--115176	30	2.1	30	91	5	101	41	11	11	36	1.76
115114--115185	30	2.4	30	86	9	85	43	12	9	34	1.76
115259--115326	30	2.3	30	87	7	95	39	11	8	39	1.73
114953--115418	145	3.2	145	96	0	828	40	14	12	32	1.84
115624--115727	36	3.0	36	83	4	133	36	11	19	32	1.87
115625--115743	36	3.4	36	80	6	120	36	12	20	30	1.90
115695--115927	105	2.3	101	83	9	276	36	12	19	30	1.90
119648--119709	32	2.0	32	96	3	117	61	9	14	14	1.57
123547--123632	13	6.5	13	73	20	63	65	2	1	31	1.13
123557--123629	3	24.0	3	74	18	62	64	2	0	32	1.08
124415--124470	15	3.7	16	77	18	57	57	5	0	37	1.22
126249--126306	24	2.4	24	85	0	80	36	25	3	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129543--129615	35	2.1	35	97	0	137	38	6	5	49	1.53
135988--136075	23	3.8	23	77	14	99	30	26	25	18	1.98
140876--140919	23	1.9	23	85	0	61	15	29	27	27	1.96
141884--141917	14	2.4	14	90	0	50	41	11	14	32	1.82
142593--142649	23	2.5	23	88	0	78	28	28	29	14	1.95
143662--143732	35	2.0	36	97	2	135	19	30	32	16	1.95
143999--144024	12	2.2	12	100	0	52	50	15	0	34	1.45
146627--146702	32	2.4	32	93	4	127	36	17	19	26	1.94
153169--153229	25	2.5	25	89	7	90	55	1	0	42	1.09
153178--153229	24	2.1	24	92	3	86	59	1	0	38	1.08
157979--158021	21	2.0	21	95	0	77	20	34	13	30	1.92
160649--161037	183	2.1	186	89	3	601	44	7	4	43	1.52

Tables:   1

The End!