genome.fa.s3938.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003938.1 Hibiscus syriacus cultivar Beakdansim tig00008511_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113632

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
973--1045	17	4.2	17	82	7	76	36	13	8	41	1.75
2901--2935	18	1.9	18	88	0	52	8	2	31	57	1.44
3150--3205	28	2.0	28	100	0	112	57	14	14	14	1.66
4574--4617	18	2.5	18	82	10	56	29	15	11	43	1.82
4676--4764	17	5.2	17	83	4	63	39	14	7	38	1.75
5926--5985	18	3.4	18	93	2	86	35	40	6	18	1.77
5936--5985	18	2.8	18	96	0	91	34	40	8	18	1.79
8315--8364	24	2.1	24	85	7	66	60	14	2	24	1.45
11524--11565	22	1.9	22	85	0	57	45	9	4	40	1.58
11687--11739	18	2.8	19	88	11	74	30	22	16	30	1.96
17753--17801	26	1.9	26	91	4	82	36	16	0	46	1.47
18227--18280	25	2.2	25	80	12	58	64	7	1	25	1.30
18947--19107	81	2.0	80	90	4	252	35	4	6	52	1.50
21227--21270	20	2.2	20	100	0	88	20	40	13	25	1.89
24009--24070	32	1.9	33	83	3	81	48	11	8	32	1.68
25596--25759	43	3.8	43	72	10	111	24	17	23	35	1.95
25800--25885	44	2.0	44	97	0	163	30	12	19	37	1.89
26227--26331	21	5.0	21	82	0	102	1	37	20	40	1.63
34502--34544	19	2.3	19	79	0	50	18	18	9	53	1.70
36910--37100	42	4.7	41	72	14	135	31	18	16	32	1.93
42780--42808	6	5.0	6	95	4	51	13	0	0	86	0.58
44773--44809	15	2.5	15	81	0	56	40	0	2	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50957--51110	27	5.7	27	89	0	220	19	18	11	51	1.75
51023--51097	12	5.5	14	76	17	86	20	20	9	50	1.75
52290--52384	6	15.0	6	72	20	52	77	1	16	4	0.98
52308--52383	9	8.3	9	80	8	64	80	1	13	5	0.95
52329--52382	10	5.3	10	82	8	56	83	1	14	0	0.73
52333--52384	11	4.6	11	83	9	61	82	1	15	0	0.75
53416--53582	32	5.2	32	91	1	253	28	15	25	31	1.96
53689--53808	34	3.5	34	87	0	177	35	19	10	35	1.86
54014--54152	73	1.9	75	85	7	194	31	17	10	39	1.85
54178--54378	36	5.6	36	89	2	298	23	23	14	37	1.92
54214--54550	170	2.0	171	85	3	464	25	21	13	39	1.90
54122--54649	206	2.5	208	87	3	722	26	21	13	38	1.90
54384--54579	36	5.4	36	83	4	234	25	20	13	40	1.88
54399--54579	73	2.5	73	84	3	240	25	20	12	40	1.88
54497--54560	21	3.3	20	69	22	64	26	23	12	37	1.90
55231--55284	17	3.1	17	70	15	56	46	11	18	24	1.81
55317--55489	92	1.9	92	89	4	271	38	13	22	26	1.91
55562--55615	17	3.1	17	70	15	56	46	11	18	24	1.81
55774--55945	43	4.0	44	82	7	210	28	13	27	30	1.94
55779--55954	86	2.1	84	88	4	255	30	13	26	29	1.94
55946--56116	90	1.9	88	83	2	216	25	18	20	35	1.95
60948--61030	10	7.7	11	75	15	68	71	1	6	21	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60989--61032	5	8.4	5	90	9	70	77	0	2	20	0.88
60989--61054	15	4.2	16	77	15	75	74	0	6	19	1.03
62208--62280	18	3.9	18	68	10	56	69	2	1	26	1.09
62299--62740	36	11.7	38	74	14	323	46	7	1	45	1.40
62298--62740	75	5.9	72	79	14	345	46	6	1	45	1.40
62731--62775	2	24.0	2	86	13	69	48	0	0	51	1.00
62299--62757	148	3.0	157	78	13	371	46	6	1	45	1.39
73822--73884	31	2.1	30	84	3	81	65	11	7	15	1.47
73816--73886	30	2.4	29	79	9	81	63	11	8	16	1.51
74743--74772	15	1.9	16	93	6	53	46	6	6	40	1.56
80442--80481	21	1.9	21	84	0	53	52	0	5	42	1.23
81481--81515	18	1.9	18	88	11	54	51	0	45	2	1.16
81481--81521	21	2.0	21	85	9	57	48	0	43	7	1.30
85201--85251	26	2.0	26	88	3	77	31	25	7	35	1.85
89034--89073	15	2.7	15	88	0	62	5	30	17	47	1.69
89180--90622	206	7.0	206	96	0	2634	28	8	28	34	1.87
98736--98778	14	3.1	14	76	6	52	39	2	6	51	1.42
101108--101162	20	2.8	20	91	0	83	21	23	23	30	1.99

Tables:   1

The End!