genome.fa.s394.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000394.1 Hibiscus syriacus cultivar Beakdansim tig00000724_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204258

Tables:   1   

This is table  1  of  1  ( 110 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11608--11934	39	8.4	39	86	2	406	33	21	27	16	1.95
13276--13332	31	1.9	30	85	7	80	29	14	12	43	1.81
15027--15053	14	1.9	14	100	0	54	14	7	3	74	1.18
15051--15085	14	2.6	13	91	8	61	20	5	2	71	1.19
19550--19606	25	2.3	25	100	0	114	52	8	7	31	1.59
19692--19725	12	2.7	13	86	9	52	41	5	8	44	1.60
21013--21073	20	3.1	20	85	2	70	34	24	11	29	1.91
21023--21082	20	3.0	20	85	2	68	36	20	10	33	1.86
22600--22633	14	2.5	14	90	4	52	44	5	11	38	1.65
22608--22703	38	2.5	38	89	0	147	40	5	8	45	1.56
22688--22719	12	2.7	12	90	0	55	31	12	9	46	1.73
22706--22803	36	2.7	35	81	12	101	40	7	10	41	1.66
24261--24295	18	1.9	18	94	0	61	20	22	31	25	1.98
24972--25071	2	54.0	2	70	21	67	41	1	5	53	1.30
24928--24986	22	2.7	23	72	17	61	49	1	3	45	1.28
26407--26479	9	8.4	9	85	7	82	27	0	1	71	0.95
26407--26471	4	15.2	4	82	17	78	27	0	0	72	0.85
26406--26480	14	5.7	14	84	10	97	28	0	1	70	0.95
26660--26691	10	3.2	10	95	0	55	43	0	6	50	1.27
33158--33183	13	2.0	13	100	0	52	23	30	0	46	1.53
40779--40812	17	1.9	18	88	5	52	41	2	0	55	1.15
41496--41526	13	2.3	13	94	5	53	87	12	0	0	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51981--52035	27	2.0	27	86	6	76	61	9	7	21	1.50
52750--52795	25	1.9	23	82	8	56	39	2	4	54	1.32
60310--60348	5	7.6	5	91	8	53	23	0	0	76	0.78
60961--61009	22	2.3	21	82	6	64	81	6	10	2	0.94
60961--61023	22	3.0	20	76	15	56	76	4	12	6	1.14
61826--61866	14	2.7	16	72	27	52	12	17	0	70	1.16
61836--61876	13	3.1	13	92	3	64	12	14	0	73	1.11
63912--63944	14	2.4	14	85	5	50	66	6	0	27	1.15
65116--65166	24	2.1	25	88	3	77	49	11	5	33	1.64
65226--65255	14	2.1	14	100	0	60	33	23	23	20	1.97
67679--67712	18	2.0	16	88	11	50	76	0	2	20	0.92
69044--69074	14	2.2	14	100	0	62	51	16	19	12	1.76
70535--70577	14	3.0	15	83	10	54	76	6	0	16	0.99
73733--73781	23	2.1	23	85	7	64	59	12	2	26	1.44
78398--78430	14	2.4	14	85	5	50	66	6	0	27	1.15
79594--79666	27	2.5	30	82	12	91	43	12	5	38	1.65
79584--79666	27	2.9	28	82	12	89	42	12	4	40	1.63
79742--79785	23	1.9	23	86	9	63	15	13	47	22	1.81
79754--79801	18	2.7	18	73	0	51	12	14	50	22	1.77
82600--82643	23	2.0	22	86	4	61	59	6	0	34	1.24
84547--84854	42	7.3	42	92	0	508	21	19	22	36	1.95
84547--84848	84	3.6	84	96	0	559	20	19	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84919--84956	6	6.5	6	93	6	69	34	47	18	0	1.49
85591--85756	21	7.9	21	81	6	185	30	24	21	24	1.99
85765--85953	21	9.1	21	84	6	201	24	22	21	30	1.99
85848--85900	19	2.7	19	91	2	88	24	20	15	39	1.91
94196--94229	8	4.2	8	100	0	68	11	0	0	88	0.52
94237--94266	14	2.1	14	93	0	51	26	3	0	70	1.03
94318--94347	13	2.3	13	94	0	51	30	0	0	70	0.88
97262--97347	35	2.5	34	77	7	93	75	5	17	1	1.06
97793--97868	36	2.1	36	85	7	100	47	1	3	47	1.29
100322--100401	40	2.0	40	85	0	106	21	23	26	28	1.99
107400--107478	34	2.4	33	85	8	99	37	0	1	60	1.05
109198--109245	21	2.3	21	85	0	60	25	39	12	22	1.89
109219--109355	63	2.2	63	80	7	154	20	36	21	21	1.95
109255--109357	21	4.9	21	95	2	163	18	36	24	20	1.94
109883--109976	28	3.2	28	83	11	100	52	4	3	40	1.37
110364--111220	126	6.8	126	98	0	1651	32	19	25	22	1.97
111288--111328	8	5.2	8	82	5	57	36	29	0	34	1.58
114324--114360	13	2.8	13	87	0	56	45	0	0	54	1.00
116409--116566	41	3.8	42	75	12	164	31	15	20	32	1.93
116905--116989	40	2.1	41	84	6	111	35	16	16	31	1.91
116983--117064	43	1.9	43	82	5	103	25	8	21	43	1.81
119890--119972	21	4.0	21	70	6	53	46	13	34	4	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119954--120027	21	3.5	21	79	0	85	43	20	31	5	1.74
120444--120653	43	4.9	43	79	6	201	37	25	15	21	1.93
120456--120654	86	2.3	85	82	3	229	36	24	16	23	1.94
120625--120683	30	2.0	30	100	0	118	27	23	16	32	1.96
120655--120765	43	2.6	43	91	0	168	29	27	18	25	1.98
120541--120765	116	1.9	116	84	5	303	32	26	16	25	1.96
120934--120967	14	2.4	14	95	0	59	32	5	17	44	1.73
129520--129558	20	2.0	20	89	0	60	33	23	10	33	1.88
139792--139875	27	3.3	27	88	6	95	38	16	17	27	1.92
139810--139875	27	2.4	27	97	0	123	36	16	18	28	1.93
139928--139968	16	2.6	16	88	3	57	29	21	12	36	1.90
142281--142330	26	1.9	26	84	15	68	52	14	12	22	1.74
145115--145217	30	3.4	30	97	0	188	31	24	20	24	1.98
145191--145284	31	3.1	30	75	4	89	30	23	18	27	1.97
145115--145242	60	2.1	61	88	1	186	32	25	19	22	1.97
145200--145295	31	3.1	30	74	12	88	32	20	19	27	1.97
146399--146441	21	2.0	21	81	0	50	18	25	27	27	1.98
149774--149871	30	3.3	30	100	0	196	32	24	19	23	1.97
150983--151020	20	1.9	20	88	0	58	10	31	34	23	1.89
154421--154545	30	4.2	30	100	0	250	32	24	19	24	1.97
155664--155701	20	1.9	20	88	0	58	10	31	34	23	1.89
155729--155771	21	2.0	21	81	0	50	18	25	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157545--157621	29	2.7	29	86	8	111	42	15	15	25	1.86
158670--158705	14	2.6	14	91	8	56	22	16	13	47	1.82
159222--159266	10	4.6	10	88	2	56	15	0	0	84	0.62
159221--159266	19	2.4	19	86	10	67	17	0	0	82	0.67
164692--164716	12	2.1	12	100	0	50	68	0	24	8	1.16
168025--168064	2	20.0	2	100	0	80	50	0	0	50	1.00
168151--168181	16	1.9	16	100	0	62	58	22	12	6	1.58
168251--168315	16	4.1	16	85	0	94	58	23	10	7	1.57
168251--168315	32	2.0	32	93	0	112	58	23	10	7	1.57
168514--168561	12	4.2	11	84	7	60	22	27	22	27	1.99
168514--168561	23	2.1	23	96	0	87	22	27	22	27	1.99
168514--168552	11	3.5	11	86	6	60	23	25	20	30	1.98
169434--169476	14	3.1	14	100	0	86	48	27	16	6	1.71
175309--175337	5	5.8	5	100	0	58	58	0	41	0	0.98
175620--175674	2	27.5	2	100	0	110	49	0	0	50	1.00
186553--186612	3	19.7	3	89	3	93	30	1	1	66	1.11
187606--187907	46	6.6	46	90	1	453	24	21	12	41	1.88
194494--194749	46	5.6	46	90	0	413	24	21	14	39	1.91
195590--195866	46	6.0	46	89	2	405	21	21	16	40	1.91
195760--195833	23	3.2	23	62	27	57	20	22	12	44	1.84
198156--198215	24	2.5	24	80	0	66	23	30	28	18	1.98
203862--203891	15	2.1	14	93	6	51	53	20	20	6	1.67

Tables:   1

The End!