genome.fa.s3941.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003941.1 Hibiscus syriacus cultivar Beakdansim tig00008517_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147729

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3783--3850	20	3.3	20	79	6	66	25	23	22	29	1.99
3890--3944	22	2.6	21	82	5	67	20	16	20	43	1.88
3891--3954	22	3.2	19	75	12	58	20	15	18	45	1.86
5249--5283	18	2.0	17	88	5	52	31	14	25	28	1.95
6026--6101	3	25.3	3	81	5	82	34	3	3	57	1.35
8003--8062	29	2.1	29	100	0	120	30	10	16	43	1.81
8349--8386	16	2.3	17	81	4	51	26	5	7	60	1.46
11310--11349	18	2.2	19	90	4	64	70	10	17	2	1.27
11360--11406	20	2.3	20	86	10	69	76	6	14	2	1.08
11715--11752	19	2.0	19	89	0	58	21	34	7	36	1.82
12599--12641	22	2.0	22	81	9	52	34	18	13	32	1.90
12683--12908	66	3.5	65	89	3	339	29	11	15	42	1.82
12862--12963	30	3.4	30	81	8	102	27	15	15	41	1.88
13051--13297	43	5.8	43	71	14	170	25	35	17	21	1.95
13038--13291	131	1.9	131	86	3	359	25	33	18	22	1.96
13492--13547	3	18.7	3	89	7	87	33	1	1	62	1.16
15922--15959	16	2.3	17	81	4	51	26	5	7	60	1.46
21395--21452	29	2.0	29	82	0	71	15	36	25	22	1.94
33645--33722	31	2.5	31	78	12	79	23	20	21	34	1.97
33695--33793	30	3.3	30	90	1	137	22	21	25	31	1.98
33706--33796	30	3.1	30	91	1	139	20	19	26	32	1.97
37517--37678	64	2.5	65	77	8	170	33	19	20	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38636--38704	29	2.3	29	85	2	75	18	23	27	30	1.98
38647--38707	29	2.1	30	90	3	97	19	19	27	32	1.96
48332--48361	6	5.0	6	91	0	51	46	16	33	3	1.64
53408--53460	17	3.4	17	70	24	62	47	0	3	49	1.19
53410--53474	29	2.2	29	100	0	130	44	0	3	52	1.16
53516--53647	68	1.9	69	83	4	169	43	9	9	37	1.71
53665--53705	21	2.0	21	90	0	64	56	0	2	41	1.13
53575--53719	78	1.9	77	82	7	186	45	9	6	37	1.64
54697--54749	21	2.5	21	84	0	70	20	26	18	33	1.96
54739--54905	20	8.3	20	81	7	196	36	20	19	23	1.95
54739--54905	60	2.8	60	88	4	255	36	20	19	23	1.95
55758--55811	24	2.2	24	90	0	81	22	16	20	40	1.91
58233--58353	20	6.5	19	78	17	92	41	21	20	16	1.90
58306--58382	19	4.3	19	79	17	101	45	16	22	15	1.85
58544--58580	14	2.6	14	86	0	56	48	21	0	29	1.50
59934--60041	42	2.6	42	79	5	121	22	17	37	22	1.94
60587--60635	20	2.5	20	82	0	62	36	24	18	20	1.94
60680--60749	20	3.5	20	96	0	122	22	18	21	37	1.94
62627--62751	39	3.2	40	86	3	166	47	22	17	12	1.82
62627--62751	58	2.1	59	97	1	234	47	22	17	12	1.82
62627--62751	19	6.4	19	85	2	160	47	22	17	12	1.82
62766--62812	20	2.3	20	88	0	67	21	19	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63372--63525	20	7.7	20	84	7	197	24	18	20	36	1.95
63522--63567	21	2.2	21	88	0	65	36	17	28	17	1.92
64387--64445	10	5.7	10	76	7	55	64	5	5	25	1.35
64387--64445	21	2.8	21	77	7	57	64	5	5	25	1.35
64386--64445	31	1.9	32	86	3	86	63	5	5	26	1.36
64975--65008	10	3.4	10	95	0	59	23	0	8	67	1.18
64972--65019	10	4.6	11	87	7	57	22	0	6	70	1.09
67631--67673	17	2.4	18	84	7	61	65	0	0	34	0.93
67610--67787	90	2.0	90	91	2	288	52	1	3	42	1.28
67725--67769	13	3.2	13	77	22	54	64	0	0	35	0.94
68529--68558	2	15.5	2	93	6	53	53	0	0	46	1.00
70609--70657	19	2.5	20	86	6	73	14	36	16	32	1.89
74132--74190	23	2.6	23	91	0	100	33	28	22	15	1.94
78082--78234	74	2.1	74	93	0	261	21	26	13	38	1.91
81064--81088	13	1.9	13	100	0	50	44	0	0	56	0.99
80772--81137	186	2.0	185	93	0	624	42	8	3	44	1.52
84342--84370	13	2.2	13	100	0	58	6	62	31	0	1.22
85323--86036	76	9.4	76	98	0	1338	34	22	21	21	1.97
89267--89484	114	1.9	113	89	0	337	29	22	15	33	1.94
92928--92958	15	2.1	15	100	0	62	29	12	12	45	1.80
94201--94492	145	2.0	147	97	2	554	45	8	11	33	1.72
97836--97864	13	2.2	13	100	0	58	6	62	31	0	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98444--98517	39	2.0	35	84	10	94	50	0	1	48	1.09
106641--106699	14	3.9	15	78	22	61	64	0	0	35	0.94
106644--106730	18	4.7	18	73	16	79	62	2	0	35	1.08
107589--107686	3	32.7	3	100	0	196	33	0	0	66	0.92
109515--109568	2	27.0	2	96	0	99	51	0	0	48	1.00
123602--123659	11	5.3	11	83	4	73	79	10	8	1	1.01
123602--123659	10	5.2	12	78	12	54	79	10	8	1	1.01
127659--127702	9	4.6	10	83	11	65	13	22	29	34	1.93
127658--127702	19	2.4	19	96	0	81	15	22	28	33	1.95
127668--127715	19	2.5	19	79	0	51	16	27	27	29	1.97
127719--127765	17	2.7	18	93	6	87	17	46	23	12	1.82
127773--127848	29	2.6	29	82	0	89	21	9	26	43	1.82
127898--127931	10	3.2	10	91	8	50	23	29	17	29	1.97
134958--134992	18	1.9	18	100	0	70	17	48	22	11	1.79
134938--134981	13	3.4	13	96	0	79	15	45	22	15	1.85
134928--134999	26	2.8	26	71	24	71	15	43	22	19	1.88
135000--135075	29	2.6	29	78	0	80	23	9	25	42	1.83
141603--141670	34	2.0	34	94	0	118	32	11	19	36	1.88

Tables:   1

The End!