Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003942.1 Hibiscus syriacus cultivar Beakdansim tig00008518_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  365498

Tables:   1   2   3   

This is table  3  of  3  ( 295 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
307215--307287
3
25.7
3
82
15
93
31
1
0
67
1.00
307194--307287
15
6.2
16
74
18
85
30
1
0
68
0.97
308635--308689
25
2.2
23
77
22
58
30
1
5
61
1.29
308626--308702
27
2.9
26
76
21
72
29
1
5
63
1.24
308605--308675
37
1.9
37
85
5
99
26
2
4
66
1.24
320332--320372
15
2.6
15
88
7
55
73
0
14
12
1.11
320346--320398
20
2.7
21
82
11
67
73
0
15
11
1.09
321429--321491
22
2.9
22
92
0
99
36
14
14
34
1.86
321778--322109
122
2.7
121
91
2
506
40
16
17
25
1.90
321920--321983
17
3.2
20
64
27
55
42
9
21
26
1.83
322462--322577
3
40.0
3
86
10
170
31
0
0
67
0.97
322446--322555
9
12.0
9
84
12
72
28
1
0
69
1.05
323709--323752
23
1.9
23
85
0
61
31
2
6
59
1.36
323920--323974
25
2.2
23
77
22
58
30
1
5
61
1.29
323890--323960
37
1.9
37
85
5
99
26
2
4
66
1.24
323969--324005
3
12.0
3
88
5
56
32
0
0
67
0.91
326347--326381
14
2.6
14
90
4
54
14
0
0
85
0.59
326346--326444
20
4.8
21
76
9
87
20
0
3
76
0.91
326350--326467
29
4.4
25
71
18
87
20
1
2
75
1.01
326352--326446
4
24.2
4
70
21
51
21
0
3
75
0.93
326356--326465
17
6.5
17
70
20
63
20
1
2
74
1.03
326510--326540
7
4.6
7
92
8
55
22
0
0
77
0.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
326510--326540
13
2.3
14
94
5
55
22
0
0
77
0.77
330125--330853
110
6.7
110
88
1
1010
34
22
18
24
1.96
331188--331419
120
1.9
120
88
0
347
31
25
19
23
1.98
331521--331592
21
3.7
21
68
21
66
27
20
9
41
1.84
331526--331608
36
2.3
36
95
0
148
31
20
9
38
1.85
331629--331781
73
2.1
73
85
0
207
26
18
13
41
1.87
331631--331781
37
4.1
36
83
2
185
26
19
13
41
1.88
331823--332005
84
2.2
84
87
1
258
31
27
19
20
1.97
338177--338224
21
2.3
21
96
0
87
41
27
22
8
1.82
339077--339164
9
10.2
8
69
16
52
20
0
3
76
0.93
339075--339172
6
19.0
5
75
24
73
21
0
3
75
0.94
339080--339172
22
4.2
22
76
22
81
21
0
3
75
0.95
339088--339176
17
5.4
17
67
29
59
22
0
3
74
0.97
339233--339263
7
4.6
7
92
8
55
22
0
0
77
0.77
339233--339263
13
2.3
14
94
5
55
22
0
0
77
0.77
340287--340453
43
3.9
42
80
6
183
28
17
19
34
1.95
340287--340444
86
1.8
86
89
2
246
29
18
18
33
1.95
340596--340676
41
2.0
41
95
0
144
50
9
7
32
1.63
340829--340876
19
2.5
19
96
0
87
29
37
10
22
1.88
343854--343950
41
2.4
41
78
0
104
39
16
17
26
1.91
357586--357702
20
6.1
20
75
13
79
48
3
0
47
1.24
357553--357653
40
2.7
40
75
15
99
51
4
1
41
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
357585--357704
18
6.5
18
70
18
70
48
3
0
47
1.24
357626--357702
2
40.0
2
78
17
83
50
2
0
46
1.15
358471--358555
32
2.5
34
81
11
111
31
12
22
32
1.92
358682--358791
34
3.3
33
70
5
103
40
10
19
30
1.84
358899--358945
21
2.3
21
79
17
55
40
14
19
25
1.90
360916--360975
20
3.3
18
80
17
63
38
5
8
48
1.55
360937--360974
15
2.5
15
84
12
51
39
5
5
50
1.48
360943--360974
16
2.1
16
94
5
57
37
6
3
53
1.42
361521--361567
21
2.2
21
84
0
58
65
2
2
29
1.15
361523--361555
14
2.3
15
90
10
52
69
3
0
27
1.03
362371--362414
21
2.1
21
83
8
54
59
0
0
40
0.98

Tables:   1   2   3

The End!