genome.fa.s3943.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003943.1 Hibiscus syriacus cultivar Beakdansim tig00008523_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61989

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2157--2193	17	2.2	17	95	0	65	13	10	35	40	1.80
3047--3090	16	2.8	16	79	3	54	15	11	25	47	1.79
3852--3884	15	2.1	16	94	5	59	39	0	0	60	0.97
4909--4968	20	2.8	20	70	25	52	65	5	1	28	1.23
7499--7530	16	2.0	16	100	0	64	50	6	25	18	1.70
11045--11250	107	1.9	107	95	2	369	27	25	17	29	1.97
12159--12382	64	3.5	64	80	4	213	32	21	19	26	1.97
12688--12723	12	3.0	12	87	0	54	30	8	25	36	1.85
12743--12812	29	2.4	29	90	2	106	44	15	21	18	1.87
12897--12944	15	3.2	15	78	0	60	16	18	29	35	1.93
19088--19272	64	2.9	64	80	3	176	34	19	20	26	1.96
19565--19613	27	1.9	24	88	12	71	38	10	16	34	1.82
19619--19654	12	3.0	12	87	0	54	30	8	25	36	1.85
19670--19743	29	2.6	29	91	2	114	43	16	21	18	1.88
19828--19891	15	4.2	15	89	2	92	14	21	32	31	1.93
19828--19891	30	2.1	31	94	2	112	14	21	32	31	1.93
20977--21021	22	2.0	22	95	0	81	26	22	20	31	1.98
21762--21809	21	2.3	21	96	0	87	22	20	25	31	1.98
21770--21815	21	2.2	21	88	0	65	28	23	17	30	1.97
25520--25561	22	1.9	22	95	0	75	26	23	21	28	1.99
29232--29277	23	2.0	23	86	0	65	36	23	21	17	1.94
29282--29343	23	2.8	21	78	4	52	41	24	11	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29364--29412	21	2.3	21	85	0	62	36	18	16	28	1.92
34576--34643	23	3.0	23	71	2	66	39	23	20	16	1.91
36276--36368	43	2.2	41	79	7	107	29	21	13	35	1.92
37727--37788	32	1.9	33	90	3	99	43	11	14	30	1.80
47175--47204	15	2.0	15	93	0	51	36	6	10	46	1.64
47206--47307	25	4.1	25	84	2	134	22	17	25	34	1.96
47212--47330	25	4.6	26	79	8	93	25	17	21	35	1.95
52819--52850	16	1.9	17	93	6	57	37	21	3	37	1.70
55698--56139	185	2.4	184	77	6	403	33	9	9	47	1.69
58050--58142	20	4.6	20	76	5	89	43	13	16	26	1.85
58981--59338	144	2.5	145	82	4	431	37	13	13	36	1.83
59236--59928	197	3.5	195	89	1	998	37	13	14	33	1.86
60454--60892	127	3.5	128	84	7	585	39	13	13	33	1.83
61911--61954	20	2.3	19	81	11	54	22	25	6	45	1.77

Tables:   1

The End!