Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003944.1 Hibiscus syriacus cultivar Beakdansim tig00008526_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76950

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1780--1826
24
2.0
24
100
0
94
25
29
12
31
1.93
8212--8255
7
6.3
7
97
0
79
54
0
43
2
1.12
8883--8940
15
4.0
15
70
17
50
58
0
0
41
0.98
10360--11431
535
2.0
535
99
0
2135
29
20
15
33
1.94
11435--11469
10
3.5
10
85
14
54
34
25
0
40
1.56
11438--11476
10
3.6
12
80
19
50
28
25
0
46
1.53
11599--11820
111
2.0
111
94
0
390
36
8
9
44
1.68
12104--12219
47
2.4
48
78
8
128
21
26
35
16
1.94
12319--12358
21
1.9
21
89
0
62
42
0
0
57
0.98
16659--16698
2
20.5
2
87
5
55
45
0
2
52
1.14
19765--19803
18
2.1
19
85
4
53
64
5
7
23
1.40
21309--21341
12
2.8
12
100
0
66
42
9
24
24
1.83
27742--27783
22
2.0
21
85
4
57
35
21
4
38
1.75
30397--30478
3
26.7
3
86
7
103
37
0
0
62
0.96
30575--30621
16
2.9
16
96
0
85
6
53
19
21
1.67
43204--43235
12
2.8
12
95
4
57
87
0
12
0
0.54
43206--43251
10
4.5
10
94
2
74
86
0
13
0
0.56
44392--44791
83
4.8
83
94
1
692
27
12
22
37
1.90
44390--44791
167
2.4
168
94
1
700
27
12
22
37
1.90
45602--46226
113
5.5
112
85
4
749
36
14
18
30
1.91
45601--46226
225
2.8
220
84
7
796
36
14
18
30
1.91
46455--46538
6
14.4
5
91
6
51
28
1
0
70
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46481--46590
3
35.7
3
88
3
157
37
0
0
62
0.95
46687--46717
16
1.9
16
100
0
62
6
51
19
22
1.69
51624--51658
18
1.9
18
94
0
61
42
2
14
40
1.60
53371--53417
15
3.1
15
96
0
85
53
14
25
6
1.65
56585--56636
25
2.1
25
85
7
70
38
11
26
23
1.89
60318--60394
37
2.1
37
90
0
118
32
23
18
25
1.97
65006--65035
14
2.1
14
93
0
51
23
3
6
66
1.30
64992--65021
10
3.0
10
95
0
51
20
6
10
63
1.47
65294--65361
10
6.1
10
72
21
55
10
10
19
60
1.57
65318--65358
14
3.2
14
74
25
54
4
12
24
58
1.53
65288--65359
24
3.1
22
83
11
99
8
9
19
62
1.51
65853--65961
33
3.2
33
85
10
155
11
9
36
42
1.74
67857--67933
21
3.5
22
74
13
68
49
1
0
49
1.09
67906--67994
29
2.9
32
73
20
84
47
1
1
50
1.15
68106--68150
23
2.0
23
86
0
63
53
2
2
42
1.25
68480--68508
14
2.0
15
93
6
51
31
13
0
55
1.39
69859--69945
28
3.1
28
94
0
156
40
22
14
21
1.91
70941--71066
13
9.2
14
71
21
67
20
3
0
74
1.03
70978--71066
4
22.8
4
76
19
73
19
4
0
76
0.95
74667--75146
110
4.5
110
83
7
626
34
23
18
23
1.96

Tables:   1

The End!