Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003947.1 Hibiscus syriacus cultivar Beakdansim tig00008532_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72468

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
461--532
34
2.2
33
84
2
90
23
27
15
33
1.95
890--980
20
4.9
19
71
15
57
24
16
29
29
1.96
947--1040
21
4.5
21
77
12
79
22
18
34
25
1.96
987--1040
21
2.6
21
85
2
83
20
18
38
22
1.93
1124--1180
29
2.0
29
89
6
89
43
17
5
33
1.71
1124--1182
30
2.0
29
93
3
100
42
16
6
33
1.75
4203--4242
21
1.9
22
90
10
66
12
10
40
37
1.77
4272--4320
21
2.3
21
100
0
98
22
24
24
28
1.99
4393--4439
20
2.3
20
96
0
85
27
21
31
19
1.97
4504--4559
21
2.7
21
94
0
94
23
19
35
21
1.96
4636--4695
29
2.0
31
93
6
106
43
16
6
33
1.74
4847--4941
44
2.2
44
94
1
165
31
26
3
38
1.72
6512--6541
15
1.9
16
93
6
53
3
36
0
60
1.14
8040--8095
21
2.8
21
86
5
80
21
17
39
21
1.93
8982--9084
3
35.0
3
88
3
147
64
0
1
33
1.05
11176--11230
17
3.1
17
74
20
58
40
3
1
54
1.28
12239--12263
10
2.5
10
100
0
50
64
0
0
36
0.94
14242--14281
6
6.5
6
91
5
53
72
15
2
10
1.21
15209--15268
31
1.9
31
96
0
111
33
20
20
26
1.97
16326--16363
20
1.9
20
94
0
67
28
31
2
36
1.71
20699--20811
56
2.0
56
96
0
208
20
10
20
48
1.78
30605--30653
23
2.1
24
81
11
57
42
2
2
53
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32958--33001
3
14.0
3
81
9
52
61
0
2
36
1.09
35859--35928
3
23.0
3
85
2
86
60
1
0
38
1.06
35850--35928
18
4.2
18
78
15
81
58
1
0
40
1.06
36083--37070
76
13.0
76
97
0
1777
35
21
21
21
1.96
40462--40681
83
2.7
83
94
0
379
36
21
13
28
1.91
49567--49639
3
24.0
3
85
2
92
60
1
0
38
1.06
52203--52240
20
1.9
20
94
0
67
34
10
31
23
1.89
52392--52473
39
2.1
40
82
8
98
52
3
1
42
1.26
53448--53547
51
1.9
51
86
6
139
55
5
1
39
1.29
54049--54077
14
2.1
14
100
0
58
34
13
13
37
1.85
55303--55367
29
2.1
31
81
18
75
56
1
1
40
1.18
57729--57783
22
2.5
21
76
5
56
25
5
1
67
1.22
63499--63528
12
2.5
12
94
0
51
6
20
0
73
1.05
63987--64029
13
3.2
13
80
6
50
18
2
2
76
1.00
71088--71274
64
2.7
66
77
14
202
28
0
14
56
1.42
71838--71881
18
2.4
19
88
3
63
20
4
0
75
0.98
71905--71965
21
2.8
20
82
9
59
22
6
0
70
1.10

Tables:   1

The End!