genome.fa.s3948.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003948.1 Hibiscus syriacus cultivar Beakdansim tig00008535_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161037

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3701--3769	23	3.2	21	75	18	63	46	0	4	49	1.21
3702--3773	20	3.4	21	76	17	69	45	0	4	50	1.21
9368--9440	37	1.9	39	83	10	98	34	15	21	28	1.94
9445--9544	43	2.3	44	76	6	116	36	15	23	26	1.93
10373--10461	22	4.0	22	89	5	128	32	13	13	40	1.83
12809--12901	42	2.2	41	80	14	109	44	1	4	50	1.28
12826--12893	23	3.0	22	75	14	68	45	0	4	50	1.22
27056--27098	15	2.6	17	78	10	54	74	0	2	23	0.93
29806--29845	21	1.9	21	89	0	62	27	17	27	27	1.98
31378--31445	17	4.1	16	74	11	57	63	5	1	29	1.27
48691--48729	17	2.2	18	86	4	53	56	7	7	28	1.55
50251--50334	36	2.3	36	89	0	141	30	16	40	11	1.85
50345--50381	12	3.0	12	92	4	56	16	51	21	10	1.74
50598--50664	31	2.2	31	94	0	116	20	11	43	23	1.85
50588--50663	31	2.8	25	73	21	80	21	10	39	28	1.86
51985--52022	20	2.0	19	90	10	60	47	10	23	18	1.79
53468--53652	59	3.1	59	82	4	187	31	21	4	43	1.72
53492--53656	59	2.8	59	85	3	199	32	18	4	44	1.69
60278--60342	30	2.2	30	83	2	78	35	18	18	27	1.94
60971--61042	33	2.1	34	94	2	128	27	6	11	54	1.61
69556--69709	53	2.9	53	98	0	290	44	22	16	16	1.86
70756--70802	18	2.6	18	80	16	60	23	19	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72107--72162	27	2.1	27	93	0	94	21	19	26	32	1.97
76350--76421	20	3.5	20	76	1	72	29	26	20	23	1.99
86581--86659	40	2.0	40	94	0	140	16	22	31	29	1.96
86582--86660	22	3.8	22	80	13	103	17	22	31	27	1.97
86628--86677	24	2.2	22	82	7	55	20	30	22	28	1.98
93662--94601	472	2.0	472	97	0	1763	26	22	22	28	1.99
105307--105341	18	1.9	18	94	0	61	14	22	34	28	1.93
107684--107712	14	2.0	15	93	6	51	20	6	10	62	1.50
110452--110517	32	2.1	32	82	5	80	54	16	10	18	1.70
113690--113806	31	3.8	30	79	4	110	47	10	11	30	1.72
114306--114358	21	2.5	21	75	6	63	20	24	18	35	1.95
114348--114399	21	2.5	21	81	3	61	40	17	21	21	1.91
114388--114523	20	6.7	20	80	6	112	30	24	19	25	1.98
115265--115318	24	2.2	24	90	0	81	25	14	18	40	1.89
115493--115517	12	2.1	12	100	0	50	72	0	28	0	0.86
117799--117895	20	4.8	20	94	2	160	31	23	27	16	1.96
117783--117874	40	2.5	34	73	21	96	31	25	28	15	1.95
119533--119620	42	2.1	42	87	6	126	21	12	40	25	1.88
119560--119624	21	3.1	21	71	8	69	23	10	43	23	1.85
119987--120054	20	3.5	20	79	2	75	38	22	23	16	1.93
120027--120085	19	3.4	19	68	22	65	49	20	16	13	1.80
120043--120101	14	3.9	14	72	20	55	50	23	15	10	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120027--120106	33	2.4	33	93	0	142	48	22	17	11	1.78
120113--120235	20	6.6	20	69	14	91	13	20	21	43	1.86
120784--120831	18	2.7	18	90	0	69	14	14	41	29	1.85
122161--122228	20	3.4	20	81	0	73	41	23	17	17	1.90
122492--122542	22	2.3	22	100	0	102	19	13	45	21	1.85
122735--122848	20	5.7	20	85	6	131	22	17	27	32	1.96
122715--122850	41	3.3	41	82	6	168	22	16	25	34	1.95
122715--122870	41	3.8	41	79	3	118	23	17	24	34	1.96
122838--122889	20	2.5	21	87	3	70	21	23	17	38	1.93
122879--122931	21	2.5	20	82	8	70	33	16	24	24	1.96
123125--123166	21	2.0	21	86	9	59	38	0	2	59	1.10
129811--129844	17	1.9	17	88	5	50	8	17	2	70	1.25
133897--134030	65	2.1	65	82	2	162	39	18	11	29	1.87
136263--136303	21	2.0	21	95	0	73	19	19	9	51	1.74
136552--136616	30	2.2	30	94	0	112	23	12	15	49	1.78
144497--144566	34	2.1	34	100	0	140	30	11	21	37	1.89

Tables:   1

The End!