genome.fa.s3950.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003950.1 Hibiscus syriacus cultivar Beakdansim tig00008538_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111806

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10906--10976	33	2.2	33	100	0	142	32	14	16	36	1.89
13515--13579	30	2.2	30	83	5	78	29	24	18	27	1.98
17129--17163	18	1.9	18	94	0	61	14	20	34	31	1.92
25267--25491	95	2.4	92	78	12	217	31	15	25	27	1.96
25904--26066	79	2.1	79	85	2	220	38	10	23	27	1.87
26032--26291	45	5.8	45	91	0	369	39	9	20	30	1.84
32409--32453	16	2.8	17	80	10	58	28	4	24	42	1.74
32567--32755	83	2.3	83	85	1	263	31	17	18	32	1.95
32705--32807	54	1.9	54	87	0	152	33	17	18	31	1.94
32756--33092	83	4.1	83	83	1	406	33	18	19	28	1.95
32572--32972	220	1.8	220	85	2	572	32	17	18	31	1.94
35528--35856	164	2.0	164	87	1	471	27	22	11	39	1.88
42958--42990	10	3.3	10	95	0	57	27	0	42	30	1.56
47424--47464	3	13.7	3	100	0	82	65	0	0	34	0.93
47628--47740	43	2.7	43	80	9	135	26	18	29	25	1.98
47762--47997	40	5.6	40	74	12	186	23	17	32	25	1.97
47668--48015	130	2.6	132	85	3	452	23	18	32	26	1.97
48028--48102	28	2.6	28	78	4	78	42	16	17	24	1.88
48974--48998	2	12.5	2	100	0	50	0	0	48	52	1.00
50005--50047	2	21.5	2	100	0	86	48	0	0	51	1.00
54003--54223	30	7.2	30	75	9	144	59	9	11	19	1.59
58784--58809	9	2.9	9	100	0	52	30	11	57	0	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61448--61493	20	2.3	19	78	10	56	54	10	15	19	1.70
63804--63869	33	2.0	33	90	0	105	30	0	45	24	1.53
66361--66861	194	2.5	198	83	6	599	38	13	14	32	1.86
69980--70027	23	2.1	23	88	0	69	37	14	10	37	1.81
70054--70105	23	2.3	23	89	0	77	36	23	5	34	1.79
69980--70140	87	1.9	86	93	3	279	34	15	10	39	1.82
70054--70114	23	2.7	23	86	0	68	36	19	6	37	1.78
70669--70816	72	2.0	73	84	6	194	42	18	12	25	1.86
71224--71329	52	2.0	52	100	0	212	50	7	7	33	1.59
71992--72123	67	2.0	67	90	0	210	43	11	6	38	1.67
80181--80220	15	2.5	17	80	15	50	35	5	10	50	1.58
80251--80373	50	2.5	50	77	2	131	14	30	29	26	1.95
80484--80525	20	2.2	19	86	4	57	35	23	0	40	1.55
80650--80982	111	3.0	111	96	0	612	36	7	11	45	1.69
85511--85637	50	2.5	50	85	0	164	19	29	36	14	1.92
87872--87961	21	4.3	21	84	0	117	28	34	14	22	1.93
87872--87961	42	2.1	42	97	0	171	28	34	14	22	1.93
88418--88476	14	4.3	14	75	12	59	25	0	11	62	1.29
88441--88476	13	2.7	13	91	4	54	19	0	13	66	1.24
91987--92027	18	2.3	18	88	12	59	56	0	7	36	1.27
92117--92174	30	1.9	30	89	6	91	55	0	1	43	1.10
93140--93326	50	3.8	49	78	6	196	40	21	9	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93140--93328	100	1.9	100	84	2	254	40	22	8	28	1.84
95403--95442	20	1.9	22	85	10	57	22	5	2	70	1.19
98551--98588	12	3.5	11	82	10	51	57	7	0	34	1.28
100088--100210	21	5.8	21	82	9	151	21	35	18	23	1.95
100630--100695	34	2.0	33	85	8	89	34	16	25	22	1.95
102986--103151	21	7.9	21	83	11	182	20	34	19	25	1.96

Tables:   1

The End!