genome.fa.s3951.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003951.1 Hibiscus syriacus cultivar Beakdansim tig00008539_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102818

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5574--5607	2	17.0	2	93	0	59	47	0	2	50	1.16
5607--5655	2	24.5	2	100	0	98	0	0	48	51	1.00
6093--6133	21	2.0	21	85	9	57	21	26	12	39	1.89
10391--10431	22	2.0	22	85	9	59	41	7	9	41	1.66
10489--10533	23	1.9	24	86	13	67	55	8	0	35	1.31
20526--20559	17	2.1	16	88	5	50	76	0	8	14	1.01
21034--21080	24	2.0	24	83	8	60	57	12	2	27	1.47
24366--24409	20	2.2	20	84	4	63	65	0	15	18	1.27
30761--30794	17	2.1	16	88	5	50	76	0	8	14	1.01
31269--31315	24	2.0	24	83	8	60	57	12	2	27	1.47
48194--48238	23	1.9	24	86	13	67	55	11	0	33	1.35
48766--48804	3	13.0	3	100	0	78	33	0	0	66	0.92
50564--50601	17	2.2	17	100	0	76	36	39	5	18	1.73
55164--55220	28	2.0	28	100	0	114	36	21	24	17	1.94
57032--57076	21	2.1	21	87	0	63	31	28	24	15	1.96
57656--57690	18	1.9	18	88	11	54	54	5	17	22	1.64
57747--57790	22	2.0	22	86	4	63	45	0	22	31	1.53
58549--59001	149	3.0	149	98	0	870	27	17	20	34	1.95
58980--59024	23	2.0	23	86	0	63	20	24	28	26	1.99
60224--60322	21	4.8	20	75	6	81	37	23	18	21	1.94
60287--60359	20	3.7	19	85	7	76	42	27	16	13	1.86
60289--60483	40	4.9	39	80	3	183	36	25	18	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60309--60482	20	8.6	20	82	5	199	35	26	18	19	1.95
60285--60482	60	3.3	60	82	1	245	36	26	18	19	1.94
60865--60935	33	2.2	33	92	0	115	11	22	18	47	1.80
61015--61124	21	5.8	20	74	17	108	45	18	24	11	1.83
61008--61124	41	3.1	38	81	14	145	46	17	25	11	1.81
61075--61131	14	3.7	14	75	20	60	43	22	24	8	1.81
61067--61147	33	2.5	33	95	0	144	46	22	22	8	1.78
61165--61254	14	5.7	14	72	23	72	8	23	23	44	1.81
61148--61262	33	3.5	33	93	0	203	10	21	20	46	1.80
61143--61240	19	5.7	19	68	22	72	11	21	22	44	1.83
63423--63447	12	2.1	12	100	0	50	0	28	0	72	0.86
64347--64576	20	11.5	20	85	1	237	19	18	24	36	1.94
64543--64619	21	3.8	20	82	5	91	19	18	23	38	1.93
64543--64659	20	5.7	21	75	7	98	18	17	26	37	1.93
64543--64659	41	2.9	41	83	6	130	18	17	26	37	1.93
64563--64659	42	2.4	42	84	6	119	19	16	27	36	1.93
64920--64954	6	5.8	6	100	0	70	31	0	0	68	0.90
65040--65071	2	16.5	2	93	6	57	46	0	0	53	1.00
64989--65076	3	27.0	3	89	6	88	37	0	1	61	1.04
65390--65437	19	2.4	20	83	13	55	16	4	4	75	1.12
65575--65612	20	1.9	20	89	10	60	15	5	5	73	1.19
70247--70756	110	4.7	110	89	4	757	35	22	16	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70247--70716	214	2.2	214	89	3	710	35	22	16	25	1.95
72906--72945	2	20.5	2	94	5	73	47	0	0	52	1.00
73363--73398	14	2.6	15	83	16	51	11	8	0	80	0.90
73374--73424	13	3.8	13	79	7	50	13	9	0	76	1.02
73367--73424	23	2.3	25	82	11	66	13	8	0	77	0.98
73440--73522	9	9.0	9	71	19	64	19	7	2	71	1.21
73430--73505	22	3.3	22	72	18	66	17	7	2	72	1.20
73450--73522	27	2.6	28	81	12	71	19	8	1	71	1.19
73485--73509	13	1.9	13	100	0	50	20	0	0	80	0.72
78536--78578	22	1.9	23	85	4	61	37	4	2	55	1.33
82385--82428	18	2.4	18	88	0	61	27	25	6	40	1.80
84250--84362	6	18.8	6	90	0	163	0	15	50	34	1.44
84346--84584	117	2.0	117	98	0	460	22	22	26	28	1.99
98122--98183	21	3.0	21	80	13	74	27	19	29	24	1.98
101227--101279	25	2.1	25	96	0	97	49	3	13	33	1.60
102689--102717	2	15.0	2	92	7	51	48	0	0	51	1.00

Tables:   1

The End!