genome.fa.s3952.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003952.1 Hibiscus syriacus cultivar Beakdansim tig00008540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109177

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3661--3772	20	5.6	20	97	0	206	41	15	22	21	1.90
4184--4215	2	16.5	2	93	6	57	46	0	0	53	1.00
4415--4500	44	1.9	45	92	2	147	29	13	16	40	1.87
9760--9818	21	2.8	21	82	12	59	23	1	3	71	1.11
9782--9824	21	2.0	22	81	4	52	34	0	4	60	1.17
13859--13913	12	4.8	12	77	8	60	43	18	20	18	1.88
13859--13913	22	2.4	23	84	6	76	43	18	20	18	1.88
14806--14892	32	2.8	32	78	5	97	34	16	14	34	1.89
15311--15398	32	2.9	29	74	6	86	31	23	6	37	1.81
15311--15398	30	2.9	30	72	11	88	31	23	6	37	1.81
19036--19261	115	2.0	116	92	2	384	29	9	16	44	1.79
19261--19415	84	1.8	84	92	0	265	28	16	24	30	1.97
20122--20152	2	15.5	2	100	0	62	51	0	0	48	1.00
22842--23038	60	3.3	59	80	2	223	35	24	4	36	1.75
22864--23036	59	2.9	59	82	2	211	34	25	4	35	1.77
27704--27746	19	2.3	18	80	11	50	44	4	4	46	1.45
28464--28489	2	13.0	2	100	0	52	0	50	0	50	1.00
28489--28525	2	18.5	2	100	0	74	48	0	0	51	1.00
32357--32415	20	2.9	20	84	2	82	28	15	22	33	1.94
38171--38199	6	4.8	6	100	0	58	0	51	0	48	1.00
38169--38215	18	2.6	18	82	0	58	2	57	2	38	1.23
46512--46636	31	4.0	32	81	7	139	32	21	17	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46512--46635	63	2.0	62	87	4	178	32	21	17	28	1.96
47087--47117	2	15.5	2	100	0	62	51	0	0	48	1.00
47643--47696	19	2.8	19	85	0	81	20	29	22	27	1.98
50452--50486	14	2.3	16	90	9	56	74	0	0	25	0.82
53483--53551	34	2.0	35	91	2	113	26	20	14	39	1.91
57317--57354	20	1.9	20	100	0	76	10	26	34	28	1.90
57670--57714	13	3.4	14	84	9	51	40	4	13	42	1.64
57681--57717	13	2.8	13	95	0	65	37	2	13	45	1.58
59265--59372	31	3.5	30	73	13	101	37	16	15	29	1.90
59280--59366	32	2.8	30	76	15	86	34	17	14	33	1.91
59745--59774	15	2.0	15	93	0	51	23	33	0	43	1.54
75324--75373	25	2.0	25	100	0	100	28	12	28	32	1.92
80090--80141	26	2.0	26	96	0	95	48	15	21	15	1.81
83498--83597	33	3.0	33	94	1	164	24	14	26	36	1.93
86361--86409	11	4.5	11	79	20	59	57	0	4	38	1.18
86354--86396	20	2.2	20	87	8	61	55	0	2	41	1.12
86501--86527	2	13.5	2	100	0	54	51	0	0	48	1.00
87465--87502	20	1.9	20	88	0	58	18	23	28	28	1.98
87804--87852	3	16.3	3	95	0	89	65	2	0	32	1.04
92288--92340	23	2.3	23	93	0	88	24	20	32	22	1.98
92288--92351	23	2.8	22	74	9	56	25	18	29	26	1.98
93843--93888	24	1.9	24	100	0	92	54	4	2	39	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94029--94077	20	2.5	20	77	12	55	53	2	4	40	1.32
100967--101010	20	2.3	19	84	7	54	45	6	25	22	1.77
101126--101173	18	2.7	18	77	9	53	39	0	8	52	1.32
101162--101235	36	2.0	37	84	7	98	50	4	0	45	1.20
102061--102510	130	3.5	129	88	2	679	33	13	13	40	1.83
103047--103748	199	3.5	199	89	2	1040	33	14	14	37	1.86
103646--104009	146	2.5	145	83	4	450	36	12	13	37	1.83
104302--104678	177	2.1	177	89	1	558	31	16	12	39	1.85
104859--104951	20	4.6	20	76	5	89	26	16	13	43	1.85

Tables:   1

The End!