Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003953.1 Hibiscus syriacus cultivar Beakdansim tig00008548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124268
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Found at i:908 original size:133 final size:134
Alignment explanation
Indices: 530--1095 Score: 747
Period size: 133 Copynumber: 4.3 Consensus size: 134
520 ACTGTTTCTG
* * * * * *
530 TAGGGTAGATCAGA-TCGAG-AAACGTTGATTCA-TTCCACTGTTTTTCATGGAAGATTGAATCA
1 TAGGGGAGATCAGACTCGAGAAAACTTTGATCCACTT-CACTATTCTTCAGGGAAGATTGAATCA
* *
592 TAATCGATTTGCTTCACTGCTCTTCAGGAAGACTAAATCTGAAAGAAGAAGAATATGC-CCACTA
65 GAATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTA
656 CTCTT
130 CTCTT
* * * *
661 TAAGGGAGATCAGACTCGAGAAAAATTTGATCCGCTTCACTGTTCTTCAGGAAGAAGATTGAATC
1 TAGGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTATTCTTCAGG--GAAGATTGAATC
* * *
726 AAAATCAATTTGTTTCA-TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACT
64 AGAATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACT
790 ACTCTT
129 ACTCTT
* * * *
796 TAGGGGATATCAAACTCGAGAAAACTTTGATCCACTTCAGTACTCTTCAGGGAAGATTGAATCA-
1 TAGGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTATTCTTCAGGGAAGATTGAATCAG
* * ** *
860 AATCGATTTGCTTCACTACTCTTCAGGAAGACCAAATTTGAAAGAAGAAGAATATATTCCACCAC
66 AATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTAC
925 TCTT
131 TCTT
* * *
929 TAGGAGAGACCAGACTCGAGAAAACTTTGATCCACTTTACTATTCTTCA-GGAAGATTGAATCAG
1 TAGGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTATTCTTCAGGGAAGATTGAATCAG
* *
993 AATCGATTTGCTTCACTGCTCTTCAAGAAGACCAAATCTGAAAGAAGAAGAATGT-CTCCACTAC
66 AATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTAC
1057 TCTT
131 TCTT
* * *
1061 TA-GGG-GATCAGACTCAAGAAATCTTTGATCTACTT
1 TAGGGGAGATCAGACTCGAGAAAACTTTGATCCACTT
1096 AATGCTCTTA
Statistics
Matches: 382, Mismatches: 45, Indels: 17
0.86 0.10 0.04
Matches are distributed among these distances:
130 26 0.07
131 14 0.04
132 45 0.12
133 175 0.46
134 42 0.11
135 80 0.21
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.28
Consensus pattern (134 bp):
TAGGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTATTCTTCAGGGAAGATTGAATCAG
AATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTAC
TCTT
Found at i:1136 original size:133 final size:132
Alignment explanation
Indices: 593--1163 Score: 629
Period size: 133 Copynumber: 4.3 Consensus size: 132
583 ATTGAATCAT
*
593 AATCGATTTGCTTCACTGCTCTTCAGGAAGACTAAATCTGAAAGAAGAAGAATATGC-CCACTAC
1 AATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTAC
* * ** * *
657 TCTTTAAGGGAGATCAGACTCGAGAAAAATTTGATCCGCTTCACTGTTCTTCAGGAAGAAGATTG
66 TCTTT-AGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTACTCTT-A--AGGAAGATTA
**
722 AATCAA
127 AATTGA
* *
728 AATCAATTTGTTTCA-TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTAC
1 AATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTAC
* * * * *
792 TCTTTAGGGGATATCAAACTCGAGAAAACTTTGATCCACTTCAGTACTCTTCAGGGAAGATTGAA
66 TCTTTA-GGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTACTCTT-AAGGAAGATTAAA
*
857 -TCA
129 TTGA
* * ** *
860 AATCGATTTGCTTCACTACTCTTCAGGAAGACCAAATTTGAAAGAAGAAGAATATATTCCACCAC
1 AATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTAC
* * * * *
925 TCTTTAGGAGAGACCAGACTCGAGAAAACTTTGATCCACTTTACTATTCTTCAGGAAGATTGAA-
66 TCTTTAGG-GAGATCAGACTCGAGAAAACTTTGATCCACTTCACTACTCTTAAGGAAGATTAAAT
*
989 TCA
130 TGA
* *
992 GAATCGATTTGCTTCACTGCTCTTCAAGAAGACCAAATCTGAAAGAAGAAGAATGT-CTCCACTA
1 -AATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTA
* * * * * *
1056 CTCTTTAGGG-GATCAGACTCAAGAAATCTTTGATCTACTT-AATGCTCTTAAGAAAGATTAAAT
65 CTCTTTAGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTACTCTTAAGGAAGATTAAAT
1119 TG-
130 TGA
* ** * *
1121 AAT-GTGTTTGCTTTGCTTCTCTTCAGGAAGACTAAATCTGAAA
1 AATCG-ATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAA
1164 ATCAAACATT
Statistics
Matches: 377, Mismatches: 52, Indels: 21
0.84 0.12 0.05
Matches are distributed among these distances:
127 1 0.00
128 35 0.09
129 16 0.04
130 27 0.07
131 1 0.00
132 45 0.12
133 147 0.39
134 41 0.11
135 64 0.17
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (132 bp):
AATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTAC
TCTTTAGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTACTCTTAAGGAAGATTAAATT
GA
Found at i:2167 original size:80 final size:80
Alignment explanation
Indices: 1842--2323 Score: 465
Period size: 80 Copynumber: 6.0 Consensus size: 80
1832 AATGACAATG
* * *
1842 AAAGATTGAC-TCATCTTCACGAGGGAGTCAAGAATAAC----AAAGATTAACTTCTCTTCACGA
1 AAAGATTGACTTC-TCTTCACGAGGAAGTCAAGAATAACATTGAAAGATTGACTCCTCTTCACGA
*
1902 GGAAGTCAAG-ATAAC
65 GGGAGTCAAGAATAAC
* * * * **
1917 ATTGAA-ATATGA-TCCTCTTCACGAGGGAGTCAAGAA-AGACAATACCGAAATATTGACTTATC
1 A---AAGAT-TGACTTCTCTTCACGAGGAAGTCAAGAATA-AC-AT--TGAAAGATTGACTCCTC
* ** *
1979 TTCATGAGAAAGTCAAGAATGACATTG
58 TTCACGAGGGAGTCAAGAAT-A-A--C
* * * **
2006 AAAGATTGAC-TCTTTTTCACGAGGGAGTCAAGAATAAC----AAAGATTAACTTTTCTTCACGA
1 AAAGATTGACTTC-TCTTCACGAGGAAGTCAAGAATAACATTGAAAGATTGACTCCTCTTCACGA
2066 -GGAG-CTAAGAATAAC
65 GGGAGTC-AAGAATAAC
* * *
2081 AAAGATTGACATCTCTTCACGAAGAAGTCAAGAATGACATTGAAAGATTGACTCCTCTTCACGAG
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACATTGAAAGATTGACTCCTCTTCACGAG
*
2146 GGAGTTAAGAATAAC
66 GGAGTCAAGAATAAC
* *
2161 AAAGATTGACTTCTCTTCATGAGGAAGTCAATAATAACATTGAAAGATTGACTCCTCTTCACGAG
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACATTGAAAGATTGACTCCTCTTCACGAG
2226 GGAGTCAAGAATAAC
66 GGAGTCAAGAATAAC
* * *
2241 AAAGATTGACTTTTCTTCACGAGGAAGTCAAGAATAACATTGAAATATTGACTCCTCTTCATGAG
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACATTGAAAGATTGACTCCTCTTCACGAG
2306 GGAGTCAAGAATAAC
66 GGAGTCAAGAATAAC
2321 AAA
1 AAA
2324 TTCATGAACA
Statistics
Matches: 342, Mismatches: 35, Indels: 55
0.79 0.08 0.13
Matches are distributed among these distances:
75 32 0.09
76 3 0.01
77 26 0.08
78 8 0.02
79 27 0.08
80 183 0.54
84 27 0.08
85 2 0.01
86 7 0.02
87 25 0.07
88 1 0.00
89 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (80 bp):
AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACATTGAAAGATTGACTCCTCTTCACGAG
GGAGTCAAGAATAAC
Found at i:2208 original size:197 final size:197
Alignment explanation
Indices: 1855--2279 Score: 599
Period size: 197 Copynumber: 2.1 Consensus size: 197
1845 GATTGACTCA
* *
1855 TCTTCACGAGGGAGTCAAGAATAACAAAGATTAACTTCTCTTCACGAGGAAGTCAAGATAACATT
1 TCTTCACGA-GGAGTCAAGAATAACAAAGATTAACATCTCTTCACGAAGAAGTCAAGATAACATT
*
1920 GAAATATGATCCTCTTCACGAGGGAGTCAAGAAAGACAATACCGAAATATTGACTTATCTTCATG
65 GAAAGATGATCCTCTTCACGAGGGAGTCAAGAAAGACAATA-CG--A-ATTGACTTATCTTCATG
* * *
1985 AGAAAGTCAAGAATGACATTGAAAGATTGACTCTTTTTCACGAGGGAGTCAAGAATAACAAAGAT
126 AGAAAGTCAAGAATAACATTGAAAGATTGACTCCTCTTCACGAGGGAGTCAAGAATAACAAAGAT
2050 TAACTTT
191 TAACTTT
* *
2057 TCTTCACGAGGAG-CTAAGAATAACAAAGATTGACATCTCTTCACGAAGAAGTCAAGAATGACAT
1 TCTTCACGAGGAGTC-AAGAATAACAAAGATTAACATCTCTTCACGAAGAAGTCAAG-ATAACAT
* *
2121 TGAAAGATTGACTCCTCTTCACGAGGGAGTTAAGAATA-ACAA-A-G-ATTGACTTCTCTTCATG
64 TGAAAGA-TGA-TCCTCTTCACGAGGGAGTCAAGAA-AGACAATACGAATTGACTTATCTTCATG
* *
2182 AGGAAGTCAATAATAACATTGAAAGATTGACTCCTCTTCACGAGGGAGTCAAGAATAACAAAGAT
126 AGAAAGTCAAGAATAACATTGAAAGATTGACTCCTCTTCACGAGGGAGTCAAGAATAACAAAGAT
*
2247 TGACTTT
191 TAACTTT
2254 TCTTCACGAGGAAGTCAAGAATAACA
1 TCTTCACGAGG-AGTCAAGAATAACA
2280 TTGAAATATT
Statistics
Matches: 203, Mismatches: 13, Indels: 18
0.87 0.06 0.08
Matches are distributed among these distances:
197 93 0.46
198 12 0.06
199 1 0.00
200 1 0.00
201 43 0.21
202 21 0.10
203 4 0.02
204 27 0.13
205 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (197 bp):
TCTTCACGAGGAGTCAAGAATAACAAAGATTAACATCTCTTCACGAAGAAGTCAAGATAACATTG
AAAGATGATCCTCTTCACGAGGGAGTCAAGAAAGACAATACGAATTGACTTATCTTCATGAGAAA
GTCAAGAATAACATTGAAAGATTGACTCCTCTTCACGAGGGAGTCAAGAATAACAAAGATTAACT
TT
Found at i:2319 original size:42 final size:42
Alignment explanation
Indices: 1813--2321 Score: 462
Period size: 42 Copynumber: 12.6 Consensus size: 42
1803 AAGATGAATT
* * *
1813 CTCTTCACGA-GAAGTCAAGAATGACAATGAAAGATTGACTC
1 CTCTTCACGAGGGAGTCAAGAATAACATTGAAAGATTGACTC
* * *
1854 ATCTTCACGAGGGAGTCAAGAATAAC----AAAGATTAACTT
1 CTCTTCACGAGGGAGTCAAGAATAACATTGAAAGATTGACTC
* *
1892 CTCTTCACGAGGAAGTCAAG-ATAACATTGAAATA-TGA-TC
1 CTCTTCACGAGGGAGTCAAGAATAACATTGAAAGATTGACTC
* * *
1931 CTCTTCACGAGGGAGTCAAGAA-AGACAATACCGAAATATTGACTT
1 CTCTTCACGAGGGAGTCAAGAATA-AC-AT--TGAAAGATTGACTC
* * ** *
1976 ATCTTCATGAGAAAGTCAAGAATGACATTGAAAGATTGACTC
1 CTCTTCACGAGGGAGTCAAGAATAACATTGAAAGATTGACTC
* * * *
2018 TTTTTCACGAGGGAGTCAAGAATAAC----AAAGATTAACTT
1 CTCTTCACGAGGGAGTCAAGAATAACATTGAAAGATTGACTC
*
2056 TTCTTCACGA-GGAG-CTAAGAATAAC----AAAGATTGACAT-
1 CTCTTCACGAGGGAGTC-AAGAATAACATTGAAAGATTGAC-TC
* * *
2093 CTCTTCACGAAGAAGTCAAGAATGACATTGAAAGATTGACTC
1 CTCTTCACGAGGGAGTCAAGAATAACATTGAAAGATTGACTC
* *
2135 CTCTTCACGAGGGAGTTAAGAATAAC----AAAGATTGACTT
1 CTCTTCACGAGGGAGTCAAGAATAACATTGAAAGATTGACTC
* * *
2173 CTCTTCATGAGGAAGTCAATAATAACATTGAAAGATTGACTC
1 CTCTTCACGAGGGAGTCAAGAATAACATTGAAAGATTGACTC
*
2215 CTCTTCACGAGGGAGTCAAGAATAAC----AAAGATTGACTT
1 CTCTTCACGAGGGAGTCAAGAATAACATTGAAAGATTGACTC
* * *
2253 TTCTTCACGAGGAAGTCAAGAATAACATTGAAATATTGACTC
1 CTCTTCACGAGGGAGTCAAGAATAACATTGAAAGATTGACTC
*
2295 CTCTTCATGAGGGAGTCAAGAATAACA
1 CTCTTCACGAGGGAGTCAAGAATAACA
2322 AATTCATGAA
Statistics
Matches: 383, Mismatches: 55, Indels: 59
0.77 0.11 0.12
Matches are distributed among these distances:
36 1 0.00
37 36 0.09
38 127 0.33
39 22 0.06
40 5 0.01
41 16 0.04
42 144 0.38
43 6 0.02
44 5 0.01
45 21 0.05
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (42 bp):
CTCTTCACGAGGGAGTCAAGAATAACATTGAAAGATTGACTC
Found at i:4074 original size:5 final size:5
Alignment explanation
Indices: 4064--4204 Score: 130
Period size: 5 Copynumber: 27.4 Consensus size: 5
4054 CTTTTCCCCT
*
4064 TTTTC TTTTC TATT- TTTT- TTTTC TTTT- TTTTC TTTTCC TTTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT-C -TTTTC TTTTC
* *
4113 TTTTC TTTTC TTTTTTC TTTCC TTTCC TTTTC TTTTC TTTTC TTTTTTC
1 TTTTC TTTTC --TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC --TTTTC
*
4162 TTTTC TTTCC TTTTC TTTT- TTTCCTC TTTTC TCTTT- TTTTC TT
1 TTTTC TTTTC TTTTC TTTTC TTT--TC TTTTC T-TTTC TTTTC TT
4205 CTCTCTCCTT
Statistics
Matches: 117, Mismatches: 6, Indels: 26
0.79 0.04 0.17
Matches are distributed among these distances:
4 17 0.15
5 77 0.66
6 6 0.05
7 17 0.15
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:4093 original size:27 final size:26
Alignment explanation
Indices: 4063--4204 Score: 153
Period size: 27 Copynumber: 5.3 Consensus size: 26
4053 CCTTTTCCCC
*
4063 TTTTTCTTTTCTATTTTTTTTTTCTTT
1 TTTTTCTTTTCT-TTTTTCTTTTCTTT
*
4090 TTTTTCTTTTCCTTTTTCTTTTCTTT
1 TTTTTCTTTTCTTTTTTCTTTTCTTT
* *
4116 TCTTTTCTTTT-TTCTTTCCTTTCCTTT
1 T-TTTTCTTTTCTT-TTTTCTTTTCTTT
4143 TCTTTTCTTTTCTTTTTTCTTTTCTTT
1 T-TTTTCTTTTCTTTTTTCTTTTCTTT
* **
4170 CCTTTTCTTTT-TTTCCTCTTTTCTCTT
1 -TTTTTCTTTTCTTTTTTCTTTTCT-TT
4197 TTTTTCTT
1 TTTTTCTT
4205 CTCTCTCCTT
Statistics
Matches: 99, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
26 33 0.33
27 64 0.65
28 2 0.02
ACGTcount: A:0.01, C:0.20, G:0.00, T:0.79
Consensus pattern (26 bp):
TTTTTCTTTTCTTTTTTCTTTTCTTT
Found at i:4100 original size:32 final size:33
Alignment explanation
Indices: 4068--4204 Score: 145
Period size: 37 Copynumber: 3.9 Consensus size: 33
4058 TCCCCTTTTT
*
4068 CTTTTCTATTTTTT-TTTTCTTTTTTTTCTTTTC
1 CTTTTCTTTTTTTTCTTTTCTTTTTTTTC-TTTC
4101 CTTTTTCTTTTCTTTTCTTTTCTTTTTTCTTTCCTTTC
1 C-TTTTCTTTT-TTTTCTTTTC-TTTTT-TTT-CTTTC
*
4139 CTTTTCTTTTCTTTTC-TTT-TTTCTTTTCTTTC
1 CTTTTCTTTT-TTTTCTTTTCTTTTTTTTCTTTC
4171 CTTTTCTTTTTTTCCTCTTTTCTCTTTTTTTCTT
1 CTTTTCTTTTTTT--TCTTTTCT-TTTTTTTCTT
4205 CTCTCTCCTT
Statistics
Matches: 90, Mismatches: 3, Indels: 19
0.80 0.03 0.17
Matches are distributed among these distances:
31 3 0.03
32 15 0.17
33 6 0.07
34 15 0.17
35 5 0.06
36 17 0.19
37 20 0.22
38 8 0.09
39 1 0.01
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (33 bp):
CTTTTCTTTTTTTTCTTTTCTTTTTTTTCTTTC
Found at i:4210 original size:22 final size:22
Alignment explanation
Indices: 4064--4210 Score: 110
Period size: 22 Copynumber: 6.8 Consensus size: 22
4054 CTTTTCCCCT
* * *
4064 TTTTCTTTTCTATTTTTTTTTTC
1 TTTTCTTTTCT-TCTCTCTTTTC
*
4087 TTTT-TTTTCTTTTC-CTTTTTC
1 TTTTCTTTTCTTCTCTC-TTTTC
* *
4108 TTTTCTTTTCTTTTCTTTTTTC
1 TTTTCTTTTCTTCTCTCTTTTC
* *
4130 TTTCCTTTCCTT-T-TCTTTTC
1 TTTTCTTTTCTTCTCTCTTTTC
* *
4150 TTTTCTTTT-TTCTTTTCTTTCC
1 TTTTCTTTTCTTC-TCTCTTTTC
*
4172 TTTTCTTTTTTTC-CTCTTTTC
1 TTTTCTTTTCTTCTCTCTTTTC
4193 TCTTT-TTTTCTTCTCTCT
1 T-TTTCTTTTCTTCTCTCT
4211 CCTTTTTATA
Statistics
Matches: 103, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
19 2 0.02
20 13 0.13
21 28 0.27
22 53 0.51
23 7 0.07
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTTCTTTTCTTCTCTCTTTTC
Found at i:4215 original size:18 final size:18
Alignment explanation
Indices: 4175--4217 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
4165 TCTTTCCTTT
*
4175 TCTTTTTTTCCTCTTTTC
1 TCTTTTTTTCCTCTTCTC
*
4193 TCTTTTTTTCTTC-TCTC
1 TCTTTTTTTCCTCTTCTC
4210 TCCTTTTT
1 T-CTTTTT
4218 ATATCTCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (18 bp):
TCTTTTTTTCCTCTTCTC
Found at i:9586 original size:2 final size:2
Alignment explanation
Indices: 9579--9619 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
9569 AAATTATTAA
9579 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9620 TAAATATCCA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:11113 original size:19 final size:19
Alignment explanation
Indices: 11090--11132 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
11080 CCTGTAAAAT
*
11090 AATAAAAAATTAAAA-AAA
1 AATAAAAAAATAAAATAAA
11108 ACATAAAAAAATAAAATAAA
1 A-ATAAAAAAATAAAATAAA
11128 AATAA
1 AATAA
11133 TAGAAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 17 0.77
20 4 0.18
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (19 bp):
AATAAAAAAATAAAATAAA
Found at i:11139 original size:15 final size:13
Alignment explanation
Indices: 11095--11141 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 13
11085 AAAATAATAA
*
11095 AAAATTAAAAAA-
1 AAAATAAAAAAAT
*
11107 AACATAAAAAAAT
1 AAAATAAAAAAAT
11120 AAAATAAAAATAAT
1 AAAATAAAAA-AAT
11134 AGAAATAA
1 A-AAATAA
11142 TAATTGTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 10 0.34
13 9 0.31
14 4 0.14
15 6 0.21
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (13 bp):
AAAATAAAAAAAT
Found at i:13497 original size:26 final size:26
Alignment explanation
Indices: 13461--13513 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13451 CTGACTGGTT
*
13461 TCTATACCCCTTATTTCAAAAACCCC
1 TCTACACCCCTTATTTCAAAAACCCC
* *
13487 TCTACACCCCTTGTTTCAAAACCCCC
1 TCTACACCCCTTATTTCAAAAACCCC
13513 T
1 T
13514 GCCTGGTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.42, G:0.02, T:0.30
Consensus pattern (26 bp):
TCTACACCCCTTATTTCAAAAACCCC
Found at i:13978 original size:15 final size:15
Alignment explanation
Indices: 13954--14026 Score: 85
Period size: 15 Copynumber: 4.9 Consensus size: 15
13944 TTGGTTTTCC
13954 GGAAAATGAATTACT
1 GGAAAATGAATTACT
** *
13969 GGAATTTGAATTACA
1 GGAAAATGAATTACT
*
13984 GGAAAATGAATTATT
1 GGAAAATGAATTACT
**
13999 GGAATTTGAATT-CT
1 GGAAAATGAATTACT
14013 GGAAAATGAATTAC
1 GGAAAATGAATTAC
14027 ATTTCTGGAA
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
14 11 0.24
15 34 0.76
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (15 bp):
GGAAAATGAATTACT
Found at i:13988 original size:30 final size:29
Alignment explanation
Indices: 13954--14026 Score: 119
Period size: 30 Copynumber: 2.5 Consensus size: 29
13944 TTGGTTTTCC
13954 GGAAAATGAATTACTGGAATTTGAATTACA
1 GGAAAATGAATTACTGGAATTTGAATT-CA
* *
13984 GGAAAATGAATTATTGGAATTTGAATTCT
1 GGAAAATGAATTACTGGAATTTGAATTCA
14013 GGAAAATGAATTAC
1 GGAAAATGAATTAC
14027 ATTTCTGGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 14 0.35
30 26 0.65
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (29 bp):
GGAAAATGAATTACTGGAATTTGAATTCA
Found at i:14287 original size:26 final size:27
Alignment explanation
Indices: 14241--14314 Score: 62
Period size: 26 Copynumber: 2.7 Consensus size: 27
14231 AAATAATTTA
* *
14241 TTTATTATTAAATAGTA-TTTTATA-AT
1 TTTATTAATAAA-AATATTTTTATATAT
*
14267 TTTATTAATAAAAATATTTTTTTTATAT
1 TTTATTAATAAAAATA-TTTTTATATAT
*
14295 TTTAGTGAAATAAAAATATT
1 TTTA-T-TAATAAAAATATT
14315 ATAAATATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 3 0.08
26 11 0.28
27 6 0.15
28 6 0.15
29 3 0.08
30 10 0.26
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (27 bp):
TTTATTAATAAAAATATTTTTATATAT
Found at i:14406 original size:23 final size:23
Alignment explanation
Indices: 14357--14413 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
14347 GTGTTATATT
**
14357 ATATTTTAAAAATATTAATTAGT
1 ATATTTTAAAAATATTAATTAAA
* * *
14380 ATATTTTAAATATCTTTATTAAA
1 ATATTTTAAAAATATTAATTAAA
*
14403 ATATATTAAAA
1 ATATTTTAAAA
14414 TATAAATAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
ATATTTTAAAAATATTAATTAAA
Found at i:14461 original size:54 final size:55
Alignment explanation
Indices: 14403--14558 Score: 159
Period size: 54 Copynumber: 2.9 Consensus size: 55
14393 CTTTATTAAA
14403 ATATATTAAAATATAAATAATATTATTCATTATTA-AATAT-ATAAATT-TTTTATT
1 ATATATTAAAATATAAATAATATTATT-ATTATTATAATATAATAAATTATTTTA-T
* **
14457 ATATATTAAAATAAAATATAATATCT-TATATTATTATAATATAATTGATTATTTTAT
1 ATATATTAAAATATAA-ATAATAT-TAT-TATTATTATAATATAATAAATTATTTTAT
14514 ATAATATTAAAA-AT--ATAATATTATTATTA-TAT-ATATTAATAAATT
1 AT-ATATTAAAATATAAATAATATTATTATTATTATAATA-TAATAAATT
14559 TATAAATAAT
Statistics
Matches: 87, Mismatches: 6, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
51 3 0.03
52 10 0.11
53 6 0.07
54 23 0.26
55 15 0.17
56 7 0.08
57 9 0.10
58 14 0.16
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (55 bp):
ATATATTAAAATATAAATAATATTATTATTATTATAATATAATAAATTATTTTAT
Found at i:14563 original size:32 final size:29
Alignment explanation
Indices: 14433--14557 Score: 95
Period size: 30 Copynumber: 4.3 Consensus size: 29
14423 TATTATTCAT
*
14433 TATTAAATATATAA-ATT-TTTTAT-TATA
1 TATTAAAAATATAATATTATTTTATATA-A
* *
14460 TATT-AAAATAAAATATAATATCTTATAT--
1 TATTAAAAATATAATAT--TATTTTATATAA
*
14488 TATT-ATAATATAATTGATTATTTTATATAA
1 TATTAAAAATATAA-T-ATTATTTTATATAA
14518 TATTAAAAATATAATATTATTATTATAT-A
1 TATTAAAAATATAATATTATT-TTATATAA
14547 TATTAATAAAT
1 TATTAA-AAAT
14558 TTATAAATAA
Statistics
Matches: 79, Mismatches: 7, Indels: 21
0.74 0.07 0.20
Matches are distributed among these distances:
26 7 0.09
27 6 0.08
28 20 0.25
29 15 0.19
30 22 0.28
31 9 0.11
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (29 bp):
TATTAAAAATATAATATTATTTTATATAA
Found at i:14809 original size:42 final size:42
Alignment explanation
Indices: 14749--14864 Score: 187
Period size: 42 Copynumber: 2.8 Consensus size: 42
14739 ATTACGTTCA
* * **
14749 GGAAAACCAATTATGTGAAACAAACACTTGAAAACATTTTCC
1 GGAAAACGAATTACGTGAAACAAACACGGGAAAACATTTTCC
*
14791 GGAAAACGAATTACGTGAAACAAACACGGGAAAATATTTTCC
1 GGAAAACGAATTACGTGAAACAAACACGGGAAAACATTTTCC
14833 GGAAAACGAATTACGTGAAACAAACACGGGAA
1 GGAAAACGAATTACGTGAAACAAACACGGGAA
14865 TTCGGGGAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.47, C:0.17, G:0.18, T:0.18
Consensus pattern (42 bp):
GGAAAACGAATTACGTGAAACAAACACGGGAAAACATTTTCC
Found at i:19258 original size:20 final size:20
Alignment explanation
Indices: 19210--19258 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
19200 AATGATTTGG
* * *
19210 TTTTGAAAGCAAAATTAGAT
1 TTTTGAAAACAAAATGAAAT
**
19230 TTTAAAAAACAAAATGAAAT
1 TTTTGAAAACAAAATGAAAT
19250 TTTTGAAAA
1 TTTTGAAAA
19259 ATAATTTTGA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.53, C:0.04, G:0.10, T:0.33
Consensus pattern (20 bp):
TTTTGAAAACAAAATGAAAT
Found at i:26441 original size:2 final size:2
Alignment explanation
Indices: 26432--26482 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
26422 TTTTTACATT
26432 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26473 TA TA TA TA TA
1 TA TA TA TA TA
26483 GTTTGCAAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:26538 original size:38 final size:35
Alignment explanation
Indices: 26468--26823 Score: 320
Period size: 38 Copynumber: 9.9 Consensus size: 35
26458 ATATATATAT
** ***
26468 ATATATATATATATAGTTTGCAAATGGTTTTTGAAA
1 ATATATATATATATAGTTTTTAAA-ACATTTTGAAA
26504 ATACGTATATGATATATAGTTTTTAAAACATTTTGAAA
1 ATA--TATAT-ATATATAGTTTTTAAAACATTTTGAAA
*
26542 AAATATATAATATATAGTTTTTAAAACATTTTTGAAA
1 ATATATAT-ATATATAGTTTTTAAAACA-TTTTGAAA
*
26579 ACTATATA-ATATATAGTTTTTAAAACATTTTAGAAT
1 A-TATATATATATATAGTTTTTAAAACATTTT-GAAA
*
26615 ATATATATATAATATAGTTTTTAAAATATTTTTTGAAA
1 ATATATATAT-ATATAGTTTTTAAAACA--TTTTGAAA
* *
26653 ACT-TATA-ATATATGGTTTTGAAAACA--TT----
1 A-TATATATATATATAGTTTTTAAAACATTTTGAAA
26681 -TATATAT-TATATAGTTTTTGAAAACATTTTGAAA
1 ATATATATATATATAGTTTTT-AAAACATTTTGAAA
* *
26715 TATATATATAATATATAGTTTTTTAAAATATTTTAAAA
1 -ATATATAT-ATATATAG-TTTTTAAAACATTTTGAAA
*
26753 TATATATATATTATATAGTTTTTTAAAACTTTTTTGAAA
1 -ATATATATA-TATATAG-TTTTTAAAAC-ATTTTGAAA
*
26792 ACATATATATTATATAGTTTTTAAAACATTTT
1 ATATATATA-TATATAGTTTTTAAAACATTTT
26824 ACAATTTTAT
Statistics
Matches: 270, Mismatches: 23, Indels: 54
0.78 0.07 0.16
Matches are distributed among these distances:
26 1 0.00
27 14 0.05
28 6 0.02
30 2 0.01
32 2 0.01
35 10 0.04
36 77 0.29
37 38 0.14
38 89 0.33
39 31 0.11
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (35 bp):
ATATATATATATATAGTTTTTAAAACATTTTGAAA
Found at i:26550 original size:72 final size:70
Alignment explanation
Indices: 26470--26824 Score: 307
Period size: 73 Copynumber: 4.9 Consensus size: 70
26460 ATATATATAT
*** *
26470 ATATATATATATAGTTTGCAAATGGTTTTTGAAAATACGTATATGATATATAGTTTTTAAAACAT
1 ATATATATATATAGTTTGCAAAACATTTTTG-AAA-AC-TATATAATATATAGTTTTTAAAACAT
26535 TTTGAAAAA
63 TTT-AAAAA
**
26544 ATATATAATATATAGTTTTTAAAACATTTTTGAAAACTATATAATATATAGTTTTTAAAACATTT
1 ATATAT-ATATATAGTTTGCAAAACATTTTTGAAAACTATATAATATATAGTTTTTAAAACATTT
*
26609 TAGAATAT
65 TA-AA-AA
** * * *
26617 ATATATATAATATAGTTTTTAAAATATTTTTTGAAAACT-TATAATATATGGTTTTGAAAACA-T
1 ATATATAT-ATATAGTTTGCAAAACA-TTTTTGAAAACTATATAATATATAGTTTTTAAAACATT
26680 TT-----
64 TTAAAAA
* *
26682 ATATAT-TATATAGTTTTTG-AAAACA-TTTTGAAATATATATATAATATATAGTTTTTTAAAAT
1 ATATATATATATAG--TTTGCAAAACATTTTTGAAA-A-CTATATAATATATAG-TTTTTAAAAC
26744 ATTTTAAAATA
61 ATTTTAAAA-A
** * *
26755 TATATATATTATATAGTTTTTTAAAACTTTTTTGAAAACATATATATTATATAGTTTTTAAAACA
1 -ATATATA-TATATAG-TTTGCAAAACATTTTTGAAAAC-TATATAATATATAGTTTTTAAAACA
26820 TTTTA
62 TTTTA
26825 CAATTTTATA
Statistics
Matches: 236, Mismatches: 21, Indels: 47
0.78 0.07 0.15
Matches are distributed among these distances:
62 8 0.03
63 7 0.03
64 7 0.03
65 20 0.08
66 9 0.04
67 3 0.01
71 1 0.00
72 35 0.15
73 46 0.19
74 27 0.11
75 39 0.17
76 26 0.11
77 8 0.03
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (70 bp):
ATATATATATATAGTTTGCAAAACATTTTTGAAAACTATATAATATATAGTTTTTAAAACATTTT
AAAAA
Found at i:26556 original size:36 final size:36
Alignment explanation
Indices: 26509--26823 Score: 298
Period size: 36 Copynumber: 8.8 Consensus size: 36
26499 TGAAAATACG
*
26509 TATATGATATATAGTTTTTAAAACATTTTGAAAAAA
1 TATATAATATATAGTTTTTAAAACATTTTGAAAAAA
*
26545 TATATAATATATAGTTTTTAAAACATTTTTG-AAAAC
1 TATATAATATATAGTTTTTAAAACA-TTTTGAAAAAA
* *
26581 TATATAATATATAGTTTTTAAAACATTTT-AGAATA
1 TATATAATATATAGTTTTTAAAACATTTTGAAAAAA
* *
26616 TATATATATAATATAGTTTTTAAAATATTTTTTG-AAAAC
1 TATATA-AT-ATATAGTTTTTAAAACA--TTTTGAAAAAA
* *
26655 T-TATAATATATGGTTTTGAAAACA-TTT------A
1 TATATAATATATAGTTTTTAAAACATTTTGAAAAAA
*
26683 TATAT--TATATAGTTTTTGAAAACATTTTGAAATATA
1 TATATAATATATAGTTTTT-AAAACATTTTGAAA-AAA
*
26719 TATATAATATATAGTTTTTTAAAATATTTT-AAAATATA
1 TATATAATATATAG-TTTTTAAAACATTTTGAAAA-A-A
* * *
26757 TATATATTATATAGTTTTTTAAAACTTTTTTGAAAACA
1 TATATAATATATAG-TTTTTAAAAC-ATTTTGAAAAAA
*
26795 TATATATTATATAGTTTTTAAAACATTTT
1 TATATAATATATAGTTTTTAAAACATTTT
26824 ACAATTTTAT
Statistics
Matches: 233, Mismatches: 22, Indels: 48
0.77 0.07 0.16
Matches are distributed among these distances:
27 10 0.04
28 7 0.03
29 6 0.03
33 3 0.01
35 12 0.05
36 80 0.34
37 36 0.15
38 59 0.25
39 16 0.07
40 4 0.02
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (36 bp):
TATATAATATATAGTTTTTAAAACATTTTGAAAAAA
Found at i:26686 original size:27 final size:28
Alignment explanation
Indices: 26656--26709 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
26646 TTTGAAAACT
26656 TATAATATAT-GGTTTTGAAAACATTTA
1 TATAATATATAGGTTTTGAAAACATTTA
* *
26683 TATATTATATAGTTTTTGAAAACATTT
1 TATAATATATAGGTTTTGAAAACATTT
26710 TGAAATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (28 bp):
TATAATATATAGGTTTTGAAAACATTTA
Found at i:26708 original size:28 final size:25
Alignment explanation
Indices: 26570--26709 Score: 94
Period size: 25 Copynumber: 5.6 Consensus size: 25
26560 TTTTAAAACA
*
26570 TTTTTGAAAAC-TATATAATATATAG
1 TTTTTGAAAACATTTATAATATAT-G
* *
26595 TTTTT-AAAACATTTTAGAATATATA
1 TTTTTGAAAACA-TTTATAATATATG
* * * * * *
26620 TATAT-AATATAGTTTTTAAAATAT-
1 TTTTTGAAAACA-TTTATAATATATG
26644 TTTTTGAAAAC--TTATAATATATG
1 TTTTTGAAAACATTTATAATATATG
*
26667 GTTTTGAAAACATTTATATATTATATAG
1 TTTTTGAAAACATTTATA-A-TATAT-G
26695 TTTTTGAAAACATTT
1 TTTTTGAAAACATTT
26710 TGAAATATAT
Statistics
Matches: 87, Mismatches: 19, Indels: 15
0.72 0.16 0.12
Matches are distributed among these distances:
22 9 0.10
23 10 0.11
24 8 0.09
25 29 0.33
26 11 0.13
27 5 0.06
28 15 0.17
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (25 bp):
TTTTTGAAAACATTTATAATATATG
Found at i:26720 original size:29 final size:27
Alignment explanation
Indices: 26645--26722 Score: 74
Period size: 28 Copynumber: 2.9 Consensus size: 27
26635 TTAAAATATT
*
26645 TTTTGAAAAC--TTATA-ATATAT-GG
1 TTTTGAAAACATTTAAATATATATAGG
* *
26668 TTTTGAAAACATTTATATATTATATAGT
1 TTTTGAAAACATTTAAATA-TATATAGG
26696 TTTTGAAAACATTTTGAAATATATATA
1 TTTTGAAAACA-TTT-AAATATATATA
26723 TAATATATAG
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
23 10 0.22
25 5 0.11
26 1 0.02
27 5 0.11
28 12 0.26
29 9 0.20
30 4 0.09
ACGTcount: A:0.41, C:0.04, G:0.09, T:0.46
Consensus pattern (27 bp):
TTTTGAAAACATTTAAATATATATAGG
Found at i:26836 original size:38 final size:37
Alignment explanation
Indices: 26681--26847 Score: 207
Period size: 38 Copynumber: 4.5 Consensus size: 37
26671 TGAAAACATT
*
26681 TATATATTATATAGTTTTTGAAAACATTTTGAAATATA
1 TATATATTATATAGTTTTTTAAAACATTTT-AAATATA
* *
26719 TATATAATATATAGTTTTTTAAAATATTTTAAAATATA
1 TATATATTATATAGTTTTTTAAAACATTTT-AAATATA
* *
26757 TATATATTATATAGTTTTTTAAAACTTTTTTGAAA-ACA
1 TATATATTATATAGTTTTTTAAAAC-ATTTT-AAATATA
*
26795 TATATATTATATAG-TTTTTAAAACATTTTACAAT-TT
1 TATATATTATATAGTTTTTTAAAACATTTTA-AATATA
26831 TATATATTATAT-GTTTT
1 TATATATTATATAGTTTT
26848 GGAAAATATT
Statistics
Matches: 113, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
35 2 0.02
36 21 0.19
37 10 0.09
38 73 0.65
39 7 0.06
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (37 bp):
TATATATTATATAGTTTTTTAAAACATTTTAAATATA
Found at i:28191 original size:32 final size:32
Alignment explanation
Indices: 28116--28197 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 32
28106 TATTTTTATT
* *
28116 TTTTTATTTATTTTTTTTCTTTAAATTCATTA
1 TTTTTATTTATTTTTATTCTTTAAATACATTA
* **
28148 TTATTATTTTATTTTTATTCTTTTCATAC-TTA
1 TTTTTA-TTTATTTTTATTCTTTAAATACATTA
28180 TGTTTTATTTATTTTTAT
1 T-TTTTATTTATTTTTAT
28198 CTAACATTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
32 20 0.48
33 22 0.52
ACGTcount: A:0.21, C:0.06, G:0.01, T:0.72
Consensus pattern (32 bp):
TTTTTATTTATTTTTATTCTTTAAATACATTA
Found at i:31867 original size:95 final size:95
Alignment explanation
Indices: 31757--32016 Score: 353
Period size: 95 Copynumber: 2.7 Consensus size: 95
31747 ATATTATAAT
* * * *
31757 ATTAT-ATATACAATAAAGCTTGATTTGTCCCTTTAAAGTAATTGGTTAAATGCCCCGACTTTAT
1 ATTATAATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAATGCCCCGACTTTAT
*
31821 GGATAAGATTCAACTAGCCTGATAAAGGTG
66 GGATAACATTCAACTAGCCTGATAAAGGTG
* *
31851 ATTATAATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAATTCCCCGGCTTTAT
1 ATTATAATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAATGCCCCGACTTTAT
* *
31916 GGATAACATTTAGCTAGCCTGATAAAGGTG
66 GGATAACATTCAACTAGCCTGATAAAGGTG
* * * * *
31946 ATTATAATAT-CTATATAAAGTATTGAGCTATCCCTCTAGAGCAATTGGTTAAACGCCCCAACTT
1 ATTATAATATAC-A-ATAAAG-CTTGAGTTGTCCCTCTAGAGCAATTGGTTAAATGCCCCGACTT
32010 TATGGAT
63 TATGGAT
32017 CCAGCTAGCC
Statistics
Matches: 146, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
94 6 0.04
95 91 0.62
96 6 0.04
97 43 0.29
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (95 bp):
ATTATAATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAATGCCCCGACTTTAT
GGATAACATTCAACTAGCCTGATAAAGGTG
Found at i:33299 original size:84 final size:84
Alignment explanation
Indices: 33143--34617 Score: 1660
Period size: 84 Copynumber: 17.7 Consensus size: 84
33133 AAACTATCGA
* * * * * * * * *
33143 CAACATAACTCAAGACGAGAAGGGTTATCTGTCAGC-CAAGACCTTTGAGTTCGATTACACTCGG
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
*
33207 CTCAAAGGCACATCATTTG
66 CTCCAAGGCACATCATTTG
* * * *
33226 CAGCATAGCTCAAGGCAAGAAGGGTTATCTGCCACCAAAAGACCTTCGAGTTCGACTACGCTTAG
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
33291 CTCCAAGGCACATCATTTG
66 CTCCAAGGCACATCATTTG
* * *
33310 CAACATAACTCAAGGCTAGAAGGGTTATCTG-AAAGC-AAAGACCTTCGAGTTCGACTATGCTCA
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAA-CAAAAGACCTTCGAGTTCGACTACGCTCA
33373 GCTCCAAGGCACATCATTTG
65 GCTCCAAGGCACATCATTTG
* * * * *
33393 TAACATAACTCAAGGCAAGAAGGGCTATTTGCCAACAAAAGACCTTCGAGTTTGACTACGCTCAA
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
* *
33458 CTCAAAGGCATATCATTTG
66 CTCCAAGGCACATCATTTG
* * * * * *
33477 CAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACCAAGGACCTTCGAGTTCGACTATGCTAAG
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
*
33542 CTCCAAGGCACATCATTTA
66 CTCCAAGGCACATCATTTG
* * * *
33561 CAATATAGA-TCAAGGCAAGAAGGGCTATTTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCA
1 CAACATA-ACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
* * *
33625 ACTCAAAGGCATATCATTTG
65 GCTCCAAGGCACATCATTTG
* * * * * * * *
33645 TAGCATAACTCAAGGCTAGAAGGGTTATCTACCAACTAAAGACCTTCGAGTTCAACTATGGTCAG
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
* * *
33710 CTCAAAGGCATATCATTTA
66 CTCCAAGGCACATCATTTG
* ** * * * * *
33729 CAGCATAACTCAAGGTTAGAAGGGTTATCTGTCAACCAAAA-TCCTTCGAGTTCAACTATGATCA
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAA-CAAAAGACCTTCGAGTTCGACTACGCTCA
*
33793 GATCCAAGGCACATCATTTG
65 GCTCCAAGGCACATCATTTG
* * * * *
33813 TAACATAGCTCAAGACAAGAAGGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
*
33878 CTCCAAGGCACATAATTTG
66 CTCCAAGGCACATCATTTG
* * ** *
33897 CAACATAACTCAAGGCTAGAA-----ATCTGCCAACCAAAGACCTTCGAGTTTAACTACGCTTAG
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
33957 CTCCAAGGCACATCATTTG
66 CTCCAAGGCACATCATTTG
* * * * *
33976 TAACATAACTCAAGACAAGAAGGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAG
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
* *
34041 CTCAAAGGCATATCATTTG
66 CTCCAAGGCACATCATTTG
* * * * *
34060 TACCATAACTC-AGGGATAGAAGGGTTATCTACCAACCAAAGACCTTCGAGTTCGACTACGCTCA
1 CAACATAACTCAAGGCA-AGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
34124 GCTCCAAGGCACATCATTTG
65 GCTCCAAGGCACATCATTTG
* * * * *
34144 CAACATAACTCAAGGCAAGAAGGGCTATTTTCCAACAAAAAACCTTCGAGTTCGACTACGTTCAG
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
* * * *
34209 CTCAAAAGAATATCATTTG
66 CTCCAAGGCACATCATTTG
* * * *
34228 CAACATAACTCAAGGCTAGAAGGG-TATCTGCCAACCAAATACCTTCGAGTTCGACTACGCTAAG
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
* *
34292 CTCCAAGACACATCTTTTG
66 CTCCAAGGCACATCATTTG
* * * * * * * * *
34311 CAACATAGCTCAAGGTAAGAAGGGCTATTTGGCAAAAAAATACCATCGAGTTCGACTATGCTCAG
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
34376 CTCCAAGGCACATCATTTG
66 CTCCAAGGCACATCATTTG
* * * * * * *
34395 CAGCATAACTCAAGGCTAGAAGGGTTATCCGCCAACAAAAGGCCTTCGAGTTCTATTACACTCAG
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
* *
34460 CTCAAAGGCACATCATTTC
66 CTCCAAGGCACATCATTTG
* * * * * * * * *
34479 CAGCATAGCTCAAGGCGAGAAGGGCTATCTACCAACAAAAGATCTTCGAGTTCGATTGCACTCAG
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
*
34544 CTCAAAGGCACATCATTTG
66 CTCCAAGGCACATCATTTG
* * * * * *
34563 CAACATAGCTCAAAGCGAGAAGGGATATATGCCAACAAAAGACCTTCAAGTTCGA
1 CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGA
34618 TTCCATTCAG
Statistics
Matches: 1174, Mismatches: 202, Indels: 31
0.83 0.14 0.02
Matches are distributed among these distances:
79 70 0.06
83 181 0.15
84 914 0.78
85 9 0.01
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.23
Consensus pattern (84 bp):
CAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
CTCCAAGGCACATCATTTG
Found at i:41170 original size:95 final size:94
Alignment explanation
Indices: 41007--41193 Score: 259
Period size: 95 Copynumber: 2.0 Consensus size: 94
40997 ATACCGATGA
* * * * *
41007 GGTAGTATCGATACCATGATATGGGTATCGATACCAAGCAACATCGAATCTAATTTTTGTATTGA
1 GGTAGTATCGATACCATGATAAGAGTATCGATACCAAGCAACATCGAACCTAATTTTGGTATCGA
*
41072 TACCAGAAGGGGGTATCGGTACCATAGTAG
66 TACCAGAA-GGGGTATCGATACCATAGTAG
* * *
41102 GGTAGTATCGATACCATGGTAAGAGTATTGATACC-AGACATCATCGAACCTAATTTTGGTATCG
1 GGTAGTATCGATACCATGATAAGAGTATCGATACCAAG-CAACATCGAACCTAATTTTGGTATCG
*
41166 ATACCTGAAGGGGTATCGATACCATAGT
65 ATACCAGAAGGGGTATCGATACCATAGT
41194 GTAGAAGTGT
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
94 20 0.25
95 61 0.75
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (94 bp):
GGTAGTATCGATACCATGATAAGAGTATCGATACCAAGCAACATCGAACCTAATTTTGGTATCGA
TACCAGAAGGGGTATCGATACCATAGTAG
Found at i:41661 original size:55 final size:55
Alignment explanation
Indices: 41577--41839 Score: 370
Period size: 55 Copynumber: 4.8 Consensus size: 55
41567 TGTATTATAG
*
41577 ACACTTTGTGTGCAAATCCACGGAATTCATCATGGGTTGATGAATCACCGTACAA
1 ACACTTTGTGTGCAAATCCACGGAATTCATCATGGGTTGATGAATCACCGTACAT
* *
41632 ACACTTTGTGTGCAAATCCACGGAATTCATCAT-GGTTAATGAATCATCGTACAT
1 ACACTTTGTGTGCAAATCCACGGAATTCATCATGGGTTGATGAATCACCGTACAT
* * * *
41686 GCACTTTGTGTACAAATCCACGAAATTCATCATGGGTTGATGAATCACTGTACAT
1 ACACTTTGTGTGCAAATCCACGGAATTCATCATGGGTTGATGAATCACCGTACAT
* * * *
41741 GCACTTTGTGTGCAAATTCACGGAATTCATCATGAGTTGATGAATCACCGTGC-T
1 ACACTTTGTGTGCAAATCCACGGAATTCATCATGGGTTGATGAATCACCGTACAT
* * *
41795 GACACTATGTGTGC-AACCCACGAAATTCATCATGGGTTGATGAAT
1 -ACACTTTGTGTGCAAATCCACGGAATTCATCATGGGTTGATGAAT
41840 TTCCCTATAG
Statistics
Matches: 185, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
54 76 0.41
55 109 0.59
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (55 bp):
ACACTTTGTGTGCAAATCCACGGAATTCATCATGGGTTGATGAATCACCGTACAT
Found at i:41769 original size:109 final size:110
Alignment explanation
Indices: 41576--41839 Score: 399
Period size: 109 Copynumber: 2.4 Consensus size: 110
41566 GTGTATTATA
*
41576 GACACTTTGTGTGCAAATCCACGGAATTCATCATGGGTTGATGAATCACCGTACAAACACTTTGT
1 GACACTTTGTGTGCAAATCCACGAAATTCATCATGGGTTGATGAATCACCGTACAAACACTTTGT
*
41641 GTGCAAATCCACGGAATTCATCATG-GTTAATGAATCATCGTACAT
66 GTGCAAATCCACGGAATTCATCATGAGTTAATGAATCACCGTAC-T
* * **
41686 G-CACTTTGTGTACAAATCCACGAAATTCATCATGGGTTGATGAATCACTGTACATGCACTTTGT
1 GACACTTTGTGTGCAAATCCACGAAATTCATCATGGGTTGATGAATCACCGTACAAACACTTTGT
* * *
41750 GTGCAAATTCACGGAATTCATCATGAGTTGATGAATCACCGTGCT
66 GTGCAAATCCACGGAATTCATCATGAGTTAATGAATCACCGTACT
* *
41795 GACACTATGTGTGC-AACCCACGAAATTCATCATGGGTTGATGAAT
1 GACACTTTGTGTGCAAATCCACGAAATTCATCATGGGTTGATGAAT
41840 TTCCCTATAG
Statistics
Matches: 140, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
109 114 0.81
110 26 0.19
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (110 bp):
GACACTTTGTGTGCAAATCCACGAAATTCATCATGGGTTGATGAATCACCGTACAAACACTTTGT
GTGCAAATCCACGGAATTCATCATGAGTTAATGAATCACCGTACT
Found at i:48161 original size:2 final size:2
Alignment explanation
Indices: 48154--48185 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
48144 AATATAAGTG
48154 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48186 TTTACATAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:48200 original size:24 final size:25
Alignment explanation
Indices: 48173--48219 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
48163 TATATATATA
*
48173 TATATATATATAT-TTTACATAAGC
1 TATATAGATATATGTTTACATAAGC
* *
48197 TATATGGATATATGTTTATATAA
1 TATATAGATATATGTTTACATAA
48220 TGAATAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (25 bp):
TATATAGATATATGTTTACATAAGC
Found at i:50673 original size:20 final size:20
Alignment explanation
Indices: 50629--50673 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
50619 TAGTATAGAA
50629 GTATCTGTACCAGGGAAGCC
1 GTATCTGTACCAGGGAAGCC
* *
50649 ATATCTGTACCAGGGAAGTC
1 GTATCTGTACCAGGGAAGCC
50669 GTATC
1 GTATC
50674 GATACTATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (20 bp):
GTATCTGTACCAGGGAAGCC
Found at i:51096 original size:55 final size:55
Alignment explanation
Indices: 51012--51329 Score: 385
Period size: 55 Copynumber: 5.8 Consensus size: 55
51002 GTACTACAGA
* * *
51012 CACTTTGTGTGCAAATCCACATAATTCATCATGGGTTGATGGATCACCGTACATG
1 CACTTTGTGTGCAAATCCACGTAATTCATCATGAGTTGATGAATCACCGTACATG
*
51067 CACTTTGTGTGTAAATCCACGTAATTCATCATTG-GTTGATGAATCACCGTACATG
1 CACTTTGTGTGCAAATCCACGTAATTCATCA-TGAGTTGATGAATCACCGTACATG
* * *
51122 CACTTTGTGTACAAATCCA-TTGAATTCATCATGAGTTGATGAATCACCGCACATG
1 CACTTTGTGTGCAAATCCACGT-AATTCATCATGAGTTGATGAATCACCGTACATG
* * * * * *
51177 CACTTTGTGTGCAAATTCATGGAATTCATCATGAGTTGATGAATCATCGCACAGG
1 CACTTTGTGTGCAAATCCACGTAATTCATCATGAGTTGATGAATCACCGTACATG
* * **
51232 AACTTTGTGTGCAAATTCACAG-AATTCATCATGAGTTGATGAATCACCGTACAAA
1 CACTTTGTGTGCAAATCCAC-GTAATTCATCATGAGTTGATGAATCACCGTACATG
* * *
51287 CACTATGTGTGC-AACCCACAG-AATTCATCATGGGTTGATGAAT
1 CACTTTGTGTGCAAATCCAC-GTAATTCATCATGAGTTGATGAAT
51330 TTTCGTATAG
Statistics
Matches: 234, Mismatches: 24, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
54 31 0.13
55 200 0.85
56 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (55 bp):
CACTTTGTGTGCAAATCCACGTAATTCATCATGAGTTGATGAATCACCGTACATG
Found at i:52623 original size:14 final size:13
Alignment explanation
Indices: 52598--52622 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52588 GAAATTAATA
52598 AAAATGAAAAAAT
1 AAAATGAAAAAAT
52611 AAAATGAAAAAA
1 AAAATGAAAAAA
52623 AATTATTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (13 bp):
AAAATGAAAAAAT
Found at i:54632 original size:21 final size:21
Alignment explanation
Indices: 54606--54662 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
54596 GGGAACGTGT
* *
54606 GTGTATTGGTACACTCTTAAG
1 GTGTATCGGTACACTCTCAAG
54627 GTGTATCGGTACACTCTCAAG
1 GTGTATCGGTACACTCTCAAG
*
54648 GTGTATCGATACACT
1 GTGTATCGGTACACT
54663 GTGTGTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (21 bp):
GTGTATCGGTACACTCTCAAG
Found at i:54807 original size:64 final size:64
Alignment explanation
Indices: 54721--54867 Score: 172
Period size: 64 Copynumber: 2.3 Consensus size: 64
54711 TACACTTGGG
* * * * **
54721 GTGTATCGATACACTAATTGCATTTGATGTTTTAATAAAGCCA-GAGTGTATCAATGCATAGGA-
1 GTGTATCGGTACACAAAATGCATTCGATGTTTTAATAAAAACAGGAGTGTATCAATGCAT--GAT
54784 T
64 T
* *
54785 GTGTATCGGTACACAAAATGCATTCGATGTTTTAATAAAAATAGGAGTGTATCGATGCATGATT
1 GTGTATCGGTACACAAAATGCATTCGATGTTTTAATAAAAACAGGAGTGTATCAATGCATGATT
* *
54849 GTGCATCGGTACATAAAAT
1 GTGTATCGGTACACAAAAT
54868 AGCGTCAATG
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
63 2 0.03
64 54 0.76
65 15 0.21
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (64 bp):
GTGTATCGGTACACAAAATGCATTCGATGTTTTAATAAAAACAGGAGTGTATCAATGCATGATT
Found at i:56932 original size:13 final size:13
Alignment explanation
Indices: 56914--56951 Score: 60
Period size: 12 Copynumber: 3.0 Consensus size: 13
56904 TCCTAATGGG
56914 CAATTTTTGAAAA
1 CAATTTTTGAAAA
56927 CAA-TTTTGAAAA
1 CAATTTTTGAAAA
*
56939 CAATGTTTGAAAA
1 CAATTTTTGAAAA
56952 ATTATGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (13 bp):
CAATTTTTGAAAA
Found at i:63393 original size:64 final size:64
Alignment explanation
Indices: 63247--63405 Score: 180
Period size: 64 Copynumber: 2.5 Consensus size: 64
63237 TACACTTGGG
* * * **
63247 GTGTATCGGTACACTAATTGCATTCGATGTTTTAATAAAGCCAGAGTGTATCGATGCATAGGAT
1 GTGTATCGATACACAAAATGCATTCGATGTTTTAATAAAAACAGAGTGTATCGATGCATAGGAT
* * * *
63311 GTGTATCGGTACACAAAATGCATTCGATGTTTTAATAAAAATAGGAGTGTATCGATTCAT-GGTT
1 GTGTATCGATACACAAAATGCATTCGATGTTTTAATAAAAACA-GAGTGTATCGATGCATAGGAT
*
63375 GT-TCATCGATACATAAAATAGC-TTCGATGTT
1 GTGT-ATCGATACACAAAAT-GCATTCGATGTT
63406 GGGTGTGCAT
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
63 1 0.01
64 65 0.78
65 17 0.20
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.34
Consensus pattern (64 bp):
GTGTATCGATACACAAAATGCATTCGATGTTTTAATAAAAACAGAGTGTATCGATGCATAGGAT
Found at i:67030 original size:31 final size:34
Alignment explanation
Indices: 66988--67063 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 34
66978 TTAAATTAAG
* *
66988 AAAATAAAAAAAAAT-AAAT-T-TCAA-AAGTAA
1 AAAATATAAAAAAATAAAATATAACAAGAAGTAA
67018 TAAAATATAAAAAAATAAAATATAACAAGAAGTAA
1 -AAAATATAAAAAAATAAAATATAACAAGAAGTAA
67053 AAAATATAAAA
1 AAAATATAAAA
67064 CAATGTTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
31 14 0.36
32 4 0.10
33 1 0.03
34 14 0.36
35 6 0.15
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.20
Consensus pattern (34 bp):
AAAATATAAAAAAATAAAATATAACAAGAAGTAA
Found at i:67031 original size:34 final size:34
Alignment explanation
Indices: 66991--67063 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 34
66981 AATTAAGAAA
* **
66991 ATAAAAAAA-AATAAATTTCAA-AAGTAATAAAAT
1 ATAAAAAAATAAAAAATAACAAGAAGTAA-AAAAT
*
67024 ATAAAAAAATAAAATATAACAAGAAGTAAAAAAT
1 ATAAAAAAATAAAAAATAACAAGAAGTAAAAAAT
67058 ATAAAA
1 ATAAAA
67064 CAATGTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 9 0.26
34 19 0.56
35 6 0.18
ACGTcount: A:0.73, C:0.03, G:0.04, T:0.21
Consensus pattern (34 bp):
ATAAAAAAATAAAAAATAACAAGAAGTAAAAAAT
Found at i:67036 original size:15 final size:15
Alignment explanation
Indices: 66925--67042 Score: 71
Period size: 15 Copynumber: 7.6 Consensus size: 15
66915 ATGTTAGAGA
66925 AAAATAATAAAAATAAT
1 AAAAT-ATAAAAA-AAT
*
66942 AAACAT-TAAATAAAT
1 AAA-ATATAAAAAAAT
* *
66957 CAAAGATAAAATAAA-
1 AAAATATAAAA-AAAT
** *
66972 AAAATATTAAATTAAG
1 AAAATA-TAAAAAAAT
*
66988 AAAATAAAAAAAAAT
1 AAAATATAAAAAAAT
* *
67003 -AAATTTCAAAAGTAAT
1 AAAATAT-AAAA-AAAT
67019 AAAATATAAAAAAAT
1 AAAATATAAAAAAAT
67034 AAAATATAA
1 AAAATATAA
67043 CAAGAAGTAA
Statistics
Matches: 76, Mismatches: 17, Indels: 18
0.68 0.15 0.16
Matches are distributed among these distances:
14 5 0.07
15 36 0.47
16 25 0.33
17 8 0.11
18 2 0.03
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (15 bp):
AAAATATAAAAAAAT
Found at i:67054 original size:32 final size:31
Alignment explanation
Indices: 66962--67063 Score: 91
Period size: 31 Copynumber: 3.2 Consensus size: 31
66952 TAAATCAAAG
* * * *
66962 ATAAAATAAAAAAATAT-TAAATTAAGAAAAT
1 ATAAAA-AAATAAATATCAAAAGTAATAAAAT
* *
66993 AAAAAAAAATAAATTTCAAAAGTAATAAAAT
1 ATAAAAAAATAAATATCAAAAGTAATAAAAT
67024 ATAAAAAAATAAAATATAACAAGAAGTAA-AAAAT
1 ATAAAAAAAT-AAATAT--CAA-AAGTAATAAAAT
67058 ATAAAA
1 ATAAAA
67064 CAATGTTTAA
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
30 8 0.14
31 25 0.43
32 5 0.09
34 14 0.24
35 6 0.10
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.22
Consensus pattern (31 bp):
ATAAAAAAATAAATATCAAAAGTAATAAAAT
Found at i:68348 original size:26 final size:26
Alignment explanation
Indices: 68304--68375 Score: 74
Period size: 26 Copynumber: 2.7 Consensus size: 26
68294 TGGACATGTT
*
68304 TAAAAAATAAAATTAAATAAATA-AGTAA
1 TAAAAAATAATA-T-AATAAATATA-TAA
*
68332 TAAAAAATAATATAATATATATATAA
1 TAAAAAATAATATAATAAATATATAA
*
68358 TAAAAACTAAATATAATA
1 TAAAAAAT-AATATAATA
68376 TGTTTTCAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
26 17 0.44
27 11 0.28
28 11 0.28
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29
Consensus pattern (26 bp):
TAAAAAATAATATAATAAATATATAA
Found at i:68425 original size:39 final size:38
Alignment explanation
Indices: 68367--68625 Score: 276
Period size: 39 Copynumber: 6.6 Consensus size: 38
68357 ATAAAAACTA
* *
68367 AATATAATATGTTTTCAAAAAAATCATTTT-AAAACTATAT
1 AATAT-ATATATTTTC-AAAAAAT-GTTTTCAAAACTATAT
* * * *
68407 AATATATATATTTTCAAAAATTATTTTCGAAACCATAT
1 AATATATATATTTTCAAAAAATGTTTTCAAAACTATAT
68445 AATATTATATATTTTCAAAAAATTGTTTTCAAAACTATACAAACT
1 AATA-TATATATTTTCAAAAAA-TGTTTTCAAAACTAT----A-T
*
68490 ATGTAATATATATTTTC-AAAAATG-TTTCAAAACTATAT
1 A-AT-ATATATATTTTCAAAAAATGTTTTCAAAACTATAT
* *
68528 ATTATATATATTTTCGAAAAATGTTTTCAAAACTTATAT
1 AATATATATATTTTCAAAAAATGTTTTCAAAAC-TATAT
68567 AATATATATATTTTCAAAAAAATGTTTTCAAAACTATAT
1 AATATATATATTTTC-AAAAAATGTTTTCAAAACTATAT
68606 AATATATATA--TTCAAAAAAT
1 AATATATATATTTTCAAAAAAT
68626 TGATTTTTTT
Statistics
Matches: 193, Mismatches: 12, Indels: 32
0.81 0.05 0.14
Matches are distributed among these distances:
36 19 0.10
37 16 0.08
38 29 0.15
39 60 0.31
40 34 0.18
43 12 0.06
44 3 0.02
45 7 0.04
46 12 0.06
47 1 0.01
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.41
Consensus pattern (38 bp):
AATATATATATTTTCAAAAAATGTTTTCAAAACTATAT
Found at i:68646 original size:41 final size:38
Alignment explanation
Indices: 68485--68745 Score: 164
Period size: 39 Copynumber: 6.8 Consensus size: 38
68475 AAAACTATAC
* *
68485 AAACTATGTAATATATAT-TTTC--AAAAATG-TTTCA
1 AAACTATATAATATATATATTTCAAAAAAATGTTTTAA
* * *
68519 AAACTATATATTATATATATTTTC-GAAAAATGTTTTCA
1 AAACTATATAATATATATA-TTTCAAAAAAATGTTTTAA
*
68557 AAACTTATATAATATATATATTTTCAAAAAAATGTTTTCA
1 AAAC-TATATAATATATATA-TTTCAAAAAAATGTTTTAA
*
68597 AAACTATATAATATATATA-TTCAAAAAATTGATTTTTTTAA
1 AAACTATATAATATATATATTTCAAAAAA---A-TGTTTTAA
* * * **
68638 AAAGTATATATTATATGT-TTTCAATAACCAT-TTTCTAA
1 AAACTATATAATATATATATTTCAA-AAAAATGTTT-TAA
** ** * *
68676 AAACTATATGTTATACGTTTTTC--GAAAATGTTTTAAA
1 AAACTATATAATATATATATTTCAAAAAAATGTTTT-AA
*
68713 AAACTATATATATTATTATATATTTAAAAAAAA
1 AAACTATATA-A-TA-TATATATTTCAAAAAAA
68746 ACTGCGAACG
Statistics
Matches: 182, Mismatches: 24, Indels: 34
0.76 0.10 0.14
Matches are distributed among these distances:
34 16 0.09
36 8 0.04
37 33 0.18
38 28 0.15
39 41 0.23
40 24 0.13
41 26 0.14
42 6 0.03
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (38 bp):
AAACTATATAATATATATATTTCAAAAAAATGTTTTAA
Found at i:74154 original size:16 final size:16
Alignment explanation
Indices: 74133--74163 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
74123 ACAAGCTAAC
74133 AAACTATTCTAGAACA
1 AAACTATTCTAGAACA
74149 AAACTATTCTAGAAC
1 AAACTATTCTAGAAC
74164 TCACAACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.19, G:0.06, T:0.26
Consensus pattern (16 bp):
AAACTATTCTAGAACA
Found at i:74936 original size:24 final size:23
Alignment explanation
Indices: 74881--74946 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
74871 ATTAACAATT
74881 TAAAAAAACTAAAACAAAAGAAA
1 TAAAAAAACTAAAACAAAAGAAA
* *
74904 TAAATAAAACTAATAA-GAATGAACA
1 TAAA-AAAACTAA-AACAAAAGAA-A
74929 TAAAAAAA-TAAAAACAAA
1 TAAAAAAACT-AAAACAAA
74947 TACAAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
23 7 0.20
24 21 0.60
25 7 0.20
ACGTcount: A:0.74, C:0.08, G:0.05, T:0.14
Consensus pattern (23 bp):
TAAAAAAACTAAAACAAAAGAAA
Found at i:75017 original size:9 final size:8
Alignment explanation
Indices: 75003--75040 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
74993 GTATACGCAC
75003 AAAAAATAA
1 AAAAAAT-A
75012 AAAAAATA
1 AAAAAATA
75020 AAAAAATA
1 AAAAAATA
*
75028 AAAAGATA
1 AAAAAATA
75036 AAAAA
1 AAAAA
75041 TCTACCAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
8 20 0.74
9 7 0.26
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.11
Consensus pattern (8 bp):
AAAAAATA
Found at i:75188 original size:18 final size:17
Alignment explanation
Indices: 75165--75207 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
75155 TATAATATTT
*
75165 AATAAAATAAGTAAAAAC
1 AATAAAACAA-TAAAAAC
*
75183 AATAAAACAATATAAAC
1 AATAAAACAATAAAAAC
75200 ACATAAAA
1 A-ATAAAA
75208 ACAAAACAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.72, C:0.09, G:0.02, T:0.16
Consensus pattern (17 bp):
AATAAAACAATAAAAAC
Found at i:75233 original size:11 final size:11
Alignment explanation
Indices: 75216--75277 Score: 54
Period size: 11 Copynumber: 5.4 Consensus size: 11
75206 AAACAAAACA
75216 AAAATAATAAT
1 AAAATAATAAT
*
75227 AATATAATAAT
1 AAAATAATAAT
*
75238 AAAATAA-AGT
1 AAAATAATAAT
75248 AAAATATATACAT
1 AAAATA-ATA-AT
*
75261 AGAAATATTATAT
1 A-AAATAATA-AT
75274 AAAA
1 AAAA
75278 ACAAATAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
10 8 0.20
11 17 0.41
12 4 0.10
13 7 0.17
14 5 0.12
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (11 bp):
AAAATAATAAT
Found at i:77450 original size:84 final size:84
Alignment explanation
Indices: 77272--78842 Score: 1800
Period size: 84 Copynumber: 18.7 Consensus size: 84
77262 AGCTGAATAG
* * * * * *
77272 AATCGAACTCGAAGGTC-TTTATTGACAGATAACCCTTTTCGCCTTGAGTTATACTGTAAATTTG
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAA--TG
* * *
77336 ATGTGCAATT-GAGTTGAGTGT
64 TTGTGC-CTTGGAGCTGAGTGT
* *
77357 AATCGAACTCGAAGGTCTTGTGTTGGCAGATAACCCTTCTAGCTTTGAGTTATGCTGCAAATGTT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
77422 GTGCCTTGGAGCTGAGTGT
66 GTGCCTTGGAGCTGAGTGT
* * *
77441 AATTGAACTCGAAGGTCTTGTGTTGGCCGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGAT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATG-T
*
77506 T-TGCCTTTGAGCTGAGTGT
65 TGTGCCTTGGAGCTGAGTGT
* * * *
77525 AATCAAACTCGAAGGTCTTTTGTTGGTAGATACCCCTTCTAGCCTTGAGTTATGCTACAAATGTT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
* *
77590 GTGCCTTAGAGCTGAGCGT
66 GTGCCTTGGAGCTGAGTGT
* * * * * *
77609 ACTCGAACTTGAAGGTATTTTGTTGGCAAATAACCCTTCTAGCCTTGAGATATGTTGCAAAT-TA
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGT-
* * *
77673 TATGCCTTGGAGCCGAGCGT
65 TGTGCCTTGGAGCTGAGTGT
* * * * *
77693 AGTCAAACTCGAAGGTCTTTTATTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGAT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
*
77758 GTGCCTTGGAGCTGAGCGT
66 GTGCCTTGGAGCTGAGTGT
* * * * * * *
77777 AGTCGAACTCGGAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATGCTACAAATATT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
* *
77842 GTGCCTTTGAGCTAAGTGT
66 GTGCCTTGGAGCTGAGTGT
* * * * * * ** * *
77861 AATCAAACTCGAATGTCTTTTTTTGGCAAATAGCCCTTCTAGCCTTGAGCTATATTACAAATGAT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
* *
77926 GTGCCTTAGAGCTGAGCGT
66 GTGCCTTGGAGCTGAGTGT
* * * * * * *
77945 AGTCGAACTCGAAGGTCTATTATTGGCAGATAGCCCTTCTCGCCTTGAGCTATGCTACAAATGTT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
*
78010 GTGCCTTTGAGCTGAGTGT
66 GTGCCTTGGAGCTGAGTGT
* * * * * *
78029 AACCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTCGACTTGAGCTATGCTGCAAATTTT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
* *
78094 GTGCCTTTGAGCTGATTGT
66 GTGCCTTGGAGCTGAGTGT
* * * * * * * *
78113 AATCAAACTCGAAGGTCTTTTTTTGGAAAATATCCCTTCTAGCCTTAAGTTATGTTGCAAATGAT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
*
78178 GTGCCTTGGAGCTGAGCGT
66 GTGCCTTGGAGCTGAGTGT
* * * * * * *
78197 AGTCGAACTCGAAGGTCTTTTGTTGGAAGATAGCCTTTCTCGCCTTGAGCTATGCTACAAATGTT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
*
78262 GTGTCTTGGAGCTGAGTGT
66 GTGCCTTGGAGCTGAGTGT
* * * *
78281 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTTGACTTGAGCTATGCTGCAAATGTT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
*
78346 GTGCCTTTGAGCTGAGTGT
66 GTGCCTTGGAGCTGAGTGT
** * * * * *
78365 AATCGAACTCGAAGGTCTTTTGTTATCAAATAGCCCTTCTAGCCTTGAGATATGTTGCAAATGAT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
* * *
78430 ATGCCTTGGAGCTAAGCGT
66 GTGCCTTGGAGCTGAGTGT
* * * * * * * *
78449 AGTTGAACTCGATGGTCTTTTGTTGGTAGATAACCCTTATCGCCTTTAGCTATGCTGCAAATGTT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
*
78514 GTGCCTTTGAGCTGAGTGT
66 GTGCCTTGGAGCTGAGTGT
* * * * * *
78533 AATCGAACTCGAAGGTCTTTTGTTGGCAAATATCCCTTCTTGCCTTGAGCTATGTTGCAAATGAT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
* *
78598 GTACCTTGGAGCTGAGCGT
66 GTGCCTTGGAGCTGAGTGT
* * ** *
78617 AGTCGAACTCGAAGGTCTTTTGTTAGCAGATAACCCTTCTAGCCTTGAGTTATAATGCAAATGAT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
*
78682 GTGCCTTGGAGCTGAGCGT
66 GTGCCTTGGAGCTGAGTGT
* * * * ** *
78701 AGTCAAACTCGAAGGTCTTTTGTTGGCAAATAGCCCTTCTCTCCTTGAGTTATGCTGCAAGTGTT
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
** *
78766 GTGCCTTTAAGCTGACTGT
66 GTGCCTTGGAGCTGAGTGT
* * *
78785 AATCAAACTCGAAGGTCTTTTGTTAGTAGATAACCCTTCTAGCCTTGAGTTATGCTGC
1 AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGC
78843 CAATAGTTTC
Statistics
Matches: 1271, Mismatches: 209, Indels: 13
0.85 0.14 0.01
Matches are distributed among these distances:
83 5 0.00
84 1212 0.95
85 19 0.01
86 35 0.03
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (84 bp):
AATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGTT
GTGCCTTGGAGCTGAGTGT
Found at i:77705 original size:252 final size:252
Alignment explanation
Indices: 77259--78842 Score: 2013
Period size: 252 Copynumber: 6.3 Consensus size: 252
77249 TGACATGTCC
* * * * * * *
77259 TTGAGCTGAATAG-AATCGAACTCGAAGGTC-TTTATTGACAGATAACCCTTTTCGCCTTGAGTT
1 TTGAGCTGAGT-GTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGCT
* * * ** * * *
77322 ATACTGTAAATTTGATGTGCAATTGAGTTGAGTGTAATCGAACTCGAAGGTCTTGTGTTGGCAGA
65 ATGCTGCAAA--TGTTGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAAA
* * * * * *
77387 TAACCCTTCTAGCTTTGAGTTATGCTGCAAATGTTGTGCCTTGGAGCTGAGTGTAATTGAACTCG
128 TAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCG
* * * *
77452 AAGGTCTTGTGTTGGCCGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATT-TGCCT
193 AAGGTCTTTTGTTGGCAGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATG-TTGTGCCT
* * *
77512 TTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGTAGATACCCCTTCTAGCCTTGAGTTA
1 TTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGCTA
* * * * * *
77577 TGCTACAAATGTTGTGCCTTAGAGCTGAGCGTACTCGAACTTGAAGGTATTTTGTTGGCAAATAA
66 TGCTGCAAATGTTGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAAATAA
* * * * *
77642 CCCTTCTAGCCTTGAGATATGTTGCAAATTATATGCCTTGGAGCCGAGCGTAGTCAAACTCGAAG
131 CCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* * * * *
77707 GTCTTTTATTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCT
196 GTCTTTTGTTGGCAGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGTTGTGCCT
* * * * * * *
77764 TGGAGCTGAGCGTAGTCGAACTCGGAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTA
1 TTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGCTA
* * * * * * *
77829 TGCTACAAATATTGTGCCTTTGAGCTAAGTGTAATCAAACTCGAATGTCTTTTTTTGGCAAATAG
66 TGCTGCAAATGTTGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAAATAA
* * * *
77894 CCCTTCTAGCCTTGAGCTATATTACAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAG
131 CCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* * * *
77959 GTCTATTATTGGCAGATAGCCCTTCTCGCCTTGAGCTATGCTACAAATGTTGTGCCT
196 GTCTTTTGTTGGCAGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGTTGTGCCT
* * *
78016 TTGAGCTGAGTGTAACCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTCGACTTGAGCTA
1 TTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGCTA
* * * * * *
78081 TGCTGCAAATTTTGTGCCTTTGAGCTGATTGTAATCAAACTCGAAGGTCTTTTTTTGGAAAATAT
66 TGCTGCAAATGTTGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAAATAA
*
78146 CCCTTCTAGCCTTAAGTTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
131 CCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* * * * *
78211 GTCTTTTGTTGGAAGATAGCCTTTCTCGCCTTGAGCTATGCTACAAATGTTGTGTCT
196 GTCTTTTGTTGGCAGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGTTGTGCCT
* * * * *
78268 TGGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTTGACTTGAGCTA
1 TTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGCTA
** *
78333 TGCTGCAAATGTTGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTATCAAATAG
66 TGCTGCAAATGTTGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAAATAA
* * * * *
78398 CCCTTCTAGCCTTGAGATATGTTGCAAATGATATGCCTTGGAGCTAAGCGTAGTTGAACTCGATG
131 CCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* * *
78463 GTCTTTTGTTGGTAGATAACCCTTATCGCCTTTAGCTATGCTGCAAATGTTGTGCCT
196 GTCTTTTGTTGGCAGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGTTGTGCCT
* * * *
78520 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAAATATCCCTTCTTGCCTTGAGCTA
1 TTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGCTA
* * * * * * * *
78585 TGTTGCAAATGATGTACCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTAGCAGATAA
66 TGCTGCAAATGTTGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAAATAA
** *
78650 CCCTTCTAGCCTTGAGTTATAATGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAG
131 CCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* * * * *
78715 GTCTTTTGTTGGCAAATAGCCCTTCTCTCCTTGAGTTATGCTGCAAGTGTTGTGCCT
196 GTCTTTTGTTGGCAGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGTTGTGCCT
* * * * *
78772 TTAAGCTGACTGTAATCAAACTCGAAGGTCTTTTGTTAGTAGATAACCCTTCTAGCCTTGAGTTA
1 TTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGCTA
78837 TGCTGC
66 TGCTGC
78843 CAATAGTTTC
Statistics
Matches: 1165, Mismatches: 163, Indels: 7
0.87 0.12 0.01
Matches are distributed among these distances:
251 1 0.00
252 1104 0.95
253 26 0.02
254 34 0.03
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (252 bp):
TTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGCTA
TGCTGCAAATGTTGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAAATAA
CCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
GTCTTTTGTTGGCAGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGTTGTGCCT
Found at i:80159 original size:95 final size:96
Alignment explanation
Indices: 79965--80224 Score: 330
Period size: 95 Copynumber: 2.7 Consensus size: 96
79955 TAGCTGAATG
* * * *
79965 CATAAAGCCGGGGCGTTTAAACAATTGCTCTAGAGGGATAACTTAA--TATCATTGTATAGATAC
1 CATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGAAAACTCAAGCT-TTATTGTAT--ATA-
80028 TATAATCACATTTATCAGGCTAGCTGAATATTATC
62 TATAATCACATTTATCAGGCTAGCTGAATATTATC
* *
80063 CATAAAGCCGGGGCGTTTAACCAATTACTCTAGGGGGAAAACTCAAGCTTTATTGTATAT-TATA
1 CATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGAAAACTCAAGCTTTATTGTATATATATA
* *
80127 ATTACCA-TTATCAGGCTAGCTGAATCTTATC
66 ATCA-CATTTATCAGGCTAGCTGAATATTATC
* * * * *
80158 CATAAAGTCGGGGCGTTTGACCAATTGCTTTAGAGGGACAGCTCAAGCTTTATTGTATATATATA
1 CATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGAAAACTCAAGCTTTATTGTATATATATA
80223 AT
66 AT
80225 ATTATAATCT
Statistics
Matches: 143, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
95 83 0.58
96 8 0.06
97 2 0.01
98 41 0.29
99 8 0.06
100 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (96 bp):
CATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGAAAACTCAAGCTTTATTGTATATATATA
ATCACATTTATCAGGCTAGCTGAATATTATC
Found at i:83010 original size:16 final size:16
Alignment explanation
Indices: 82974--83017 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
82964 TAATAATTGT
82974 TATA-AAAAATAAATA
1 TATACAAAAATAAATA
* *
82989 -AAACAAAAATAAGTA
1 TATACAAAAATAAATA
83004 TATACAAAAATAAA
1 TATACAAAAATAAA
83018 AAAAAGTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 2 0.09
15 10 0.43
16 11 0.48
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (16 bp):
TATACAAAAATAAATA
Found at i:84738 original size:3 final size:3
Alignment explanation
Indices: 84732--84777 Score: 60
Period size: 3 Copynumber: 15.7 Consensus size: 3
84722 TCCAATAATA
*
84732 TAT TAT TAT TAT TA- TAT TA- CAGT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
84776 TA
1 TA
84778 CAAATATTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 3 0.08
3 34 0.89
4 1 0.03
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:85505 original size:12 final size:12
Alignment explanation
Indices: 85474--85517 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
85464 TATCGGTGGT
* *
85474 GAATAGTAATCG
1 GAATAGTGACCG
85486 GAATAGTGACCG
1 GAATAGTGACCG
* *
85498 GAATAGTGGCCA
1 GAATAGTGACCG
85510 GAATAGTG
1 GAATAGTG
85518 CTCGACGGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.32, T:0.20
Consensus pattern (12 bp):
GAATAGTGACCG
Found at i:86140 original size:16 final size:17
Alignment explanation
Indices: 86116--86149 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
86106 ATATATCCTA
*
86116 TTAATATATA-TAATGT
1 TTAAAATATACTAATGT
86132 TTAAAATATACTAATGT
1 TTAAAATATACTAATGT
86149 T
1 T
86150 CACTAGTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (17 bp):
TTAAAATATACTAATGT
Found at i:88409 original size:46 final size:47
Alignment explanation
Indices: 88324--88416 Score: 127
Period size: 46 Copynumber: 2.0 Consensus size: 47
88314 TTAATATTAC
* * * *
88324 TTTATTTTCCGAACAAATGTATGTGAACTAGAAATCATGAGGTTAGG
1 TTTATTTTCCAAACAAATGCATGTGAACTAGAAAGCATGAAGTTAGG
88371 TTTATTTTTCCAAACAAA-GCATG-GAACTAGAAAGCATGAAGTTAGG
1 TTTA-TTTTCCAAACAAATGCATGTGAACTAGAAAGCATGAAGTTAGG
88417 ATTTTTATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
46 21 0.51
47 8 0.20
48 12 0.29
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (47 bp):
TTTATTTTCCAAACAAATGCATGTGAACTAGAAAGCATGAAGTTAGG
Found at i:95817 original size:99 final size:99
Alignment explanation
Indices: 95646--96075 Score: 716
Period size: 99 Copynumber: 4.3 Consensus size: 99
95636 CACAAATTTG
** * *
95646 TAAATCCTCAAGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTAGCATGAAAATGAGAAAGTGA
1 TAAATCCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATGAAAATGAGAAAGCGA
95711 TTACCAAAGTTTCTCATTTAATGTTCAAGAAAAT
66 TTACCAAAGTTTCTCATTTAATGTTCAAGAAAAT
*
95745 TAAATCCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTTGCATGAAAATGAGAAAGCGA
1 TAAATCCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATGAAAATGAGAAAGCGA
*
95810 TTACCAAAGTTTCTCATTTAATGTTCTAGAAAAT
66 TTACCAAAGTTTCTCATTTAATGTTCAAGAAAAT
* * *
95844 TAAAACCTCTGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATGAAAATGAGAAAGTGA
1 TAAATCCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATGAAAATGAGAAAGCGA
95909 TTACCAAAGTTTCTCATTTAATGTTCAAGAAAAT
66 TTACCAAAGTTTCTCATTTAATGTTCAAGAAAAT
*
95943 TAAATCCTCTGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATGAAAATGAGAAAGCGA
1 TAAATCCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATGAAAATGAGAAAGCGA
*
96008 TTACCAAAGTTTCTCATTTAATGTTCTAGAAAAT
66 TTACCAAAGTTTCTCATTTAATGTTCAAGAAAAT
* * * * *
96042 TAAAACCTCCGGGTAATTTGTAAATCCTCCGGGT
1 TAAATCCTCCGGGTCATCTGTAAAACCTCAGGGT
96076 GATTTGTAAA
Statistics
Matches: 312, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 312 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (99 bp):
TAAATCCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATGAAAATGAGAAAGCGA
TTACCAAAGTTTCTCATTTAATGTTCAAGAAAAT
Found at i:96070 original size:20 final size:20
Alignment explanation
Indices: 96042--96096 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
96032 TCTAGAAAAT
96042 TAAAACCTCCGGGTAATTTG
1 TAAAACCTCCGGGTAATTTG
* *
96062 TAAATCCTCCGGGTGATTTG
1 TAAAACCTCCGGGTAATTTG
*
96082 TAAAACCTCAGGGTA
1 TAAAACCTCCGGGTA
96097 GGATGTTTTC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (20 bp):
TAAAACCTCCGGGTAATTTG
Found at i:96154 original size:119 final size:119
Alignment explanation
Indices: 95943--96224 Score: 456
Period size: 119 Copynumber: 2.4 Consensus size: 119
95933 TCAAGAAAAT
* *
95943 TAAATCCTCTGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATGAAAATGAGAAAGCGA
1 TAAATCCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATGAAAATGAGAAAACGA
*
96008 TTACCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAAACCTCCGGGTAATTTG
66 TTACCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAAACCTCCGGGTAATTTA
* *
96062 TAAATCCTCCGGGTGATTTGTAAAACCTCAGGGTAGGATGTTTTCGCATGAAAATGAGAAAACGA
1 TAAATCCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATGAAAATGAGAAAACGA
* * * *
96127 TTATCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAATCCTCCGGTTGATTTA
66 TTACCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAAACCTCCGGGTAATTTA
* * *
96181 TAAAACCTCCGGGTCATCTGTAAAACCTCTGGGTATGATGTTTT
1 TAAATCCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTT
96225 TACTTCAATT
Statistics
Matches: 149, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
119 149 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Consensus pattern (119 bp):
TAAATCCTCCGGGTCATCTGTAAAACCTCAGGGTAGGATGTTTTCGCATGAAAATGAGAAAACGA
TTACCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAAACCTCCGGGTAATTTA
Found at i:96362 original size:3 final size:3
Alignment explanation
Indices: 96356--96442 Score: 97
Period size: 3 Copynumber: 29.7 Consensus size: 3
96346 TCCAATAATA
* * *
96356 TAT TAT TAT TAT TAT TAT TAT TA- TAT TAC AAT TAT TAT TAT CA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
96402 TAT TAT TAT TGT TGT TGT TGT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
96443 CAAATATTAC
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
2 3 0.04
3 71 0.96
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:96405 original size:23 final size:22
Alignment explanation
Indices: 96353--96406 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 22
96343 TCGTCCAATA
**
96353 ATATATTATTATTATTATTATT
1 ATATATTATTACAATTATTATT
96375 AT-TA-TATTACAATTATTATT
1 ATATATTATTACAATTATTATT
96395 ATCATATTATTA
1 AT-ATATTATTA
96407 TTATTGTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 16 0.59
21 2 0.07
22 4 0.15
23 5 0.19
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (22 bp):
ATATATTATTACAATTATTATT
Found at i:96409 original size:20 final size:20
Alignment explanation
Indices: 96359--96411 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
96349 AATAATATAT
*
96359 TATTATTATTATTATTATTA
1 TATTATTATTATTATTATCA
**
96379 TATTACAATTATTATTATCA
1 TATTATTATTATTATTATCA
96399 TATTATTATTATT
1 TATTATTATTATT
96412 GTTGTTGTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTATTATTATTATTATCA
Found at i:99497 original size:12 final size:12
Alignment explanation
Indices: 99480--99506 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
99470 AAATTCGACA
99480 TTATTTGATTTT
1 TTATTTGATTTT
99492 TTATTTGATTTT
1 TTATTTGATTTT
99504 TTA
1 TTA
99507 CTAGTACATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (12 bp):
TTATTTGATTTT
Found at i:100307 original size:35 final size:35
Alignment explanation
Indices: 100261--100332 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
100251 CCAAAAAAGA
100261 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
1 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
100296 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
1 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
100331 AG
1 AG
100333 GGTTTTTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.28
Consensus pattern (35 bp):
AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
Found at i:101255 original size:2 final size:2
Alignment explanation
Indices: 101248--101292 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
101238 TTGATGTATG
101248 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
101290 TA T
1 TA T
101293 TTTGTTTTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:106956 original size:18 final size:18
Alignment explanation
Indices: 106933--106968 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
106923 TCAACATCAA
*
106933 ATATTGGGGCATTTTTGG
1 ATATTGGGGCATCTTTGG
106951 ATATTGGGGCATCTTTGG
1 ATATTGGGGCATCTTTGG
106969 GGATTTAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.08, G:0.33, T:0.42
Consensus pattern (18 bp):
ATATTGGGGCATCTTTGG
Found at i:108550 original size:106 final size:106
Alignment explanation
Indices: 108393--108829 Score: 685
Period size: 106 Copynumber: 4.1 Consensus size: 106
108383 TCGCGCCACC
* * *
108393 CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTAAACAAACAACTTCCCAAT
1 CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAAT
* *
108458 TTCAGAGCCAATTTCAACTTCACAGCGAAAGATATTGGACT
66 TTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACT
* *
108499 CAAGATAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAAT
1 CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAAT
* * **
108564 TTCATAGCCAATTTCAACTTCACAGCGAAGGGCATTGGACT
66 TTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACT
*
108605 CGAGACAACACAAGTTCAACTTCACAACGAAGGGACAGCTGGTTGTCAACAAACAATTTCCCAAT
1 CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAAT
*
108670 TTCATAACCAATTTCAACTTCACAGCGAAGGATATTGGACT
66 TTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACT
* * *
108711 CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGTTGGTTGTCAACAAACAATTTTCCAGT
1 CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAAT
* * *
108776 TCCAGAACCAATTTCAACTTCACGGCGGAGGATATTGGACT
66 TTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACT
* *
108817 CGAAACAATACAA
1 CGAGACAACACAA
108830 CCTACTTGGA
Statistics
Matches: 306, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
106 306 1.00
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (106 bp):
CGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAAT
TTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACT
Found at i:109678 original size:35 final size:35
Alignment explanation
Indices: 109586--109657 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
109576 CCAAAAAAGA
109586 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
1 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
109621 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
1 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
109656 AG
1 AG
109658 GGTTTTTTAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.28
Consensus pattern (35 bp):
AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
Found at i:110059 original size:17 final size:18
Alignment explanation
Indices: 110033--110072 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
110023 ATTATATGGA
110033 TATT-TTATTCAT-TTAT
1 TATTATTATTCATGTTAT
*
110049 TTTTATTATTCATGTTAT
1 TATTATTATTCATGTTAT
110067 TATTAT
1 TATTAT
110073 ACGTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 3 0.15
17 8 0.40
18 9 0.45
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
TATTATTATTCATGTTAT
Found at i:110140 original size:2 final size:2
Alignment explanation
Indices: 110133--110161 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
110123 ATTTTATTAT
110133 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
110162 TTCTTTAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:110193 original size:63 final size:61
Alignment explanation
Indices: 110063--110204 Score: 173
Period size: 61 Copynumber: 2.3 Consensus size: 61
110053 ATTATTCATG
* *
110063 TTATTATTATACGTATATATATATATATATATAAATTATTTTCATTTGATTTTTTACTATATT
1 TTATTATTATA--TATATATATATATATATATAAATTATTTTCATTTAATATTTTACTATATT
* *
110126 TTATTATTATATATATATATATATATATATATA-TA-TTTC-TTTAATATTTTACTTATAAGT
1 TTATTATTATATATATATATATATATATATAAATTATTTTCATTTAATATTTTAC-TAT-ATT
*
110186 CTATTATTACTATATATAT
1 TTATTATTA-TATATATAT
110205 TGTAATTATC
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
58 11 0.15
59 7 0.10
60 12 0.17
61 30 0.42
63 11 0.15
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (61 bp):
TTATTATTATATATATATATATATATATATAAATTATTTTCATTTAATATTTTACTATATT
Found at i:110571 original size:38 final size:40
Alignment explanation
Indices: 110520--110599 Score: 112
Period size: 40 Copynumber: 2.0 Consensus size: 40
110510 AGTGAGAGGG
*
110520 TAGCTTTTCTATTTT-TAAATA-TTTGTTGTATATATATA
1 TAGCTTTTCTATTTTATAAATACTTTGATGTATATATATA
*
110558 TAGCTTATT-TATTTTATTAATACTTTGATGTATATATATA
1 TAGCTT-TTCTATTTTATAAATACTTTGATGTATATATATA
110598 TA
1 TA
110600 TTTTTTTCCT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
38 12 0.32
39 7 0.19
40 18 0.49
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.56
Consensus pattern (40 bp):
TAGCTTTTCTATTTTATAAATACTTTGATGTATATATATA
Found at i:110675 original size:9 final size:9
Alignment explanation
Indices: 110663--110687 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
110653 CCTTATCTTA
110663 TTTATTTAT
1 TTTATTTAT
110672 TTTATTTAT
1 TTTATTTAT
110681 TTTATTT
1 TTTATTT
110688 TTCCCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTATTTAT
Found at i:112790 original size:2 final size:2
Alignment explanation
Indices: 112783--112808 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
112773 TACTTTTCAA
112783 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
112809 TTGGGATCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:112928 original size:16 final size:16
Alignment explanation
Indices: 112900--112933 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
112890 TCAGATAGTG
112900 TTTTATAAATAATTTT
1 TTTTATAAATAATTTT
112916 TTTTA-AAAGTAATTTT
1 TTTTATAAA-TAATTTT
112932 TT
1 TT
112934 AAAAAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTTATAAATAATTTT
Found at i:113606 original size:80 final size:80
Alignment explanation
Indices: 113473--113634 Score: 306
Period size: 80 Copynumber: 2.0 Consensus size: 80
113463 CAACTGAACT
113473 AATTAACTTATTGTTTTTCTAATAAAATGAAACAATTCATTGATTTTGAATCAAATGTAAGCAGA
1 AATTAACTTATTGTTTTTCTAATAAAATGAAACAATTCATTGATTTTGAATCAAATGTAAGCAGA
113538 CATGACTAATAAACC
66 CATGACTAATAAACC
* *
113553 AATTAACTTATTGTTTTTCTGATAAAATGAAACAATTCATTGATTTTGAATCAAATGTAAGCATA
1 AATTAACTTATTGTTTTTCTAATAAAATGAAACAATTCATTGATTTTGAATCAAATGTAAGCAGA
113618 CATGACTAATAAACC
66 CATGACTAATAAACC
113633 AA
1 AA
113635 CTATTAAAAT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (80 bp):
AATTAACTTATTGTTTTTCTAATAAAATGAAACAATTCATTGATTTTGAATCAAATGTAAGCAGA
CATGACTAATAAACC
Found at i:114297 original size:10 final size:10
Alignment explanation
Indices: 114282--114335 Score: 63
Period size: 10 Copynumber: 5.1 Consensus size: 10
114272 CATTTAAATG
114282 ATAAACGAAC
1 ATAAACGAAC
114292 ATAAACGAAC
1 ATAAACGAAC
*
114302 GTAAACGAAC
1 ATAAACGAAC
*
114312 ACAAACGAAC
1 ATAAACGAAC
114322 GTAGTAAACGAAC
1 --A-TAAACGAAC
114335 A
1 A
114336 CAAAAAACGA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
10 27 0.73
11 1 0.03
12 1 0.03
13 8 0.22
ACGTcount: A:0.56, C:0.20, G:0.15, T:0.09
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:114332 original size:23 final size:20
Alignment explanation
Indices: 114283--114339 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 20
114273 ATTTAAATGA
*
114283 TAAACGAACATAAACGAACG
1 TAAACGAACACAAACGAACG
114303 TAAACGAACACAAACGAACGTAG
1 TAAACGAACACAAACGAAC---G
114326 TAAACGAACACAAA
1 TAAACGAACACAAA
114340 AAACGAACAA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 18 0.55
23 15 0.45
ACGTcount: A:0.56, C:0.21, G:0.14, T:0.09
Consensus pattern (20 bp):
TAAACGAACACAAACGAACG
Found at i:114343 original size:13 final size:14
Alignment explanation
Indices: 114327--114355 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
114317 CGAACGTAGT
114327 AAACGAAC-ACAAA
1 AAACGAACAACAAA
114340 AAACGAACAACAAA
1 AAACGAACAACAAA
114354 AA
1 AA
114356 CTTATTCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.72, C:0.21, G:0.07, T:0.00
Consensus pattern (14 bp):
AAACGAACAACAAA
Found at i:118306 original size:45 final size:45
Alignment explanation
Indices: 118250--118357 Score: 153
Period size: 45 Copynumber: 2.4 Consensus size: 45
118240 TAAACCAAGA
* **
118250 CTTTTGATTATTGTATTGCCAAAATTAAAACCAAATTATTAGTTC
1 CTTTTGATTATTGGATTGCCAAAATTAAAACCAAAGGATTAGTTC
* * *
118295 CTTTCGATTATTGGATTGCGAAAATTAAAATCAAAGGATTAGTTC
1 CTTTTGATTATTGGATTGCCAAAATTAAAACCAAAGGATTAGTTC
*
118340 TTTTTGATTATTGGATTG
1 CTTTTGATTATTGGATTG
118358 GTAAAATTGA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.43
Consensus pattern (45 bp):
CTTTTGATTATTGGATTGCCAAAATTAAAACCAAAGGATTAGTTC
Found at i:118581 original size:58 final size:58
Alignment explanation
Indices: 118517--118906 Score: 356
Period size: 58 Copynumber: 6.8 Consensus size: 58
118507 AATTTTGCGT
* * *
118517 TGATTCTAACTTTCTAAGGAAAATAGATTGTTAAATTTATTTCCTTTAGAATCTTAAA
1 TGATTCTAACTTTGTAAGGAAAATAAATTGTTAAATTTATTTCCTTGAGAATCTTAAA
* * *
118575 TGATTCTAACTTTGTAAGGAAAATAGATTGTTGAATTTATTTCCTTGAGAATCTTTAA
1 TGATTCTAACTTTGTAAGGAAAATAAATTGTTAAATTTATTTCCTTGAGAATCTTAAA
* *
118633 TGATTCTAACTTTGTAAGGAAAA-AAATTG-T---TGTATTTCCTTG-GAAATCTTGAA
1 TGATTCTAACTTTGTAAGGAAAATAAATTGTTAAATTTATTTCCTTGAG-AATCTTAAA
* * * * ** * * **
118686 TAATTTTAACTTTGTAAGAAAAATAAATTATCGAATTTATTTTCTTGAGAATCGTGGA
1 TGATTCTAACTTTGTAAGGAAAATAAATTGTTAAATTTATTTCCTTGAGAATCTTAAA
* * * * * *
118744 TGATTTTATCCTT-TAA-AATTAAATAAATTGTTAAATTTATTTTCTTGAGAATTTTAAA
1 TGATTCTAACTTTGTAAGGA--AAATAAATTGTTAAATTTATTTCCTTGAGAATCTTAAA
* * *
118802 TGATTCT-ATTTTGTAA--AATTTAATAAATTGTTAAATTTATTTTCTTGAGAATATTAAA
1 TGATTCTAACTTTGTAAGGAA---AATAAATTGTTAAATTTATTTCCTTGAGAATCTTAAA
* *
118860 TGATTCT-ATTTTGTTGAA-GAAAATAAATTGTTAAATTTATTTTCTTG
1 TGATTCTAACTTTG-T-AAGGAAAATAAATTGTTAAATTTATTTCCTTG
118907 GAAATATTGA
Statistics
Matches: 285, Mismatches: 31, Indels: 32
0.82 0.09 0.09
Matches are distributed among these distances:
52 1 0.00
53 39 0.14
54 5 0.02
55 1 0.00
56 3 0.01
57 11 0.04
58 219 0.77
59 2 0.01
60 2 0.01
61 2 0.01
ACGTcount: A:0.36, C:0.07, G:0.12, T:0.45
Consensus pattern (58 bp):
TGATTCTAACTTTGTAAGGAAAATAAATTGTTAAATTTATTTCCTTGAGAATCTTAAA
Found at i:118811 original size:27 final size:27
Alignment explanation
Indices: 118781--118876 Score: 72
Period size: 27 Copynumber: 3.4 Consensus size: 27
118771 TTGTTAAATT
118781 TATTTTCTTGAGAATTTTAAATGATTC
1 TATTTTCTTGAGAATTTTAAATGATTC
* *
118808 TATTTT-GT-AAAATTTAATAAATTGTTAAATT-
1 TATTTTCTTGAGAATTT--TAAA-TG----ATTC
*
118839 TATTTTCTTGAGAATATTAAATGATTC
1 TATTTTCTTGAGAATTTTAAATGATTC
*
118866 TATTTTGTTGA
1 TATTTTCTTGA
118877 AGAAAATAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 20
0.67 0.08 0.25
Matches are distributed among these distances:
25 6 0.11
26 4 0.08
27 20 0.38
28 2 0.04
30 2 0.04
31 10 0.19
32 4 0.08
33 5 0.09
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.52
Consensus pattern (27 bp):
TATTTTCTTGAGAATTTTAAATGATTC
Found at i:119060 original size:95 final size:92
Alignment explanation
Indices: 118951--119209 Score: 256
Period size: 93 Copynumber: 2.8 Consensus size: 92
118941 ATTTTCTTAT
* *
118951 ATGATTCTA-TTGTAAAAGGAAAGAAACCGTTGAATTTATTTTCATTTTTGTAAAAGAAAATAAA
1 ATGATTCTATTTGTAAAAGGAAATAAATCGTTGAATTTATTTTCATTTTT-TAAAA-AAAAT-AA
**
119015 AT-TTTGAATTTATTTTCTTAAGAATCTCAC
63 ATCGAT-AATTTATTTTCTTAAGAATCTCAC
* * * *
119045 A-GATTCTGATTTGTAAAAGGAAATAAATCGTAGAATATATTTTCCTTTTTTGAAAAAAATAAAT
1 ATGATTCT-ATTTGTAAAAGGAAATAAATCGTTGAATTTATTTTCATTTTTTAAAAAAAATAAAT
* ***
119109 CGATAATTTATTTTCTTAATAATCTTGT
65 CGATAATTTATTTTCTTAAGAATCTCAC
* * * * *
119137 ATGATTCTTATATGTAAAAGAAAATAAATCGTTGGATTTATTTTCCTATTTTGAAAAATTAAATA
1 ATGATTC-TATTTGTAAAAGGAAATAAATCGTTGAATTTATTTTCAT-TTTTTAAAAA--AAATA
119202 AATC-ATAA
62 AATCGATAA
119210 AATTTAGTTT
Statistics
Matches: 138, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
92 25 0.18
93 50 0.36
94 15 0.11
95 39 0.28
96 9 0.07
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.41
Consensus pattern (92 bp):
ATGATTCTATTTGTAAAAGGAAATAAATCGTTGAATTTATTTTCATTTTTTAAAAAAAATAAATC
GATAATTTATTTTCTTAAGAATCTCAC
Found at i:119240 original size:39 final size:39
Alignment explanation
Indices: 119149--119380 Score: 187
Period size: 39 Copynumber: 5.7 Consensus size: 39
119139 GATTCTTATA
* *
119149 TGTAAAAGAAAATAAATCGTTGGATTTATTTTCCTATTT
1 TGTAAAAGGAAATAAATCGTTGGATTTAGTTTCCTATTT
* ** * *** *
119188 TGAAAAATTAAATAAATCATAAAATTTAGTTTCCTAATT
1 TGTAAAAGGAAATAAATCGTTGGATTTAGTTTCCTATTT
* *
119227 TGTAAAAGGAAATAACTCGTTGGATTTAGTTTCTTATTT
1 TGTAAAAGGAAATAAATCGTTGGATTTAGTTTCCTATTT
* * *
119266 TGTAAAAAGGAAATAAATCGAAATAAATCGTTTGATTTATTTTCTTGTTT
1 TGT-AAAAGGAAATAAATCG---T---T-G---GATTTAGTTTCCTATTT
* * *
119316 TGTAAAA-GAAATAAATCATTTGATTTATTTTCCTATTT
1 TGTAAAAGGAAATAAATCGTTGGATTTAGTTTCCTATTT
*
119354 TGTAAAAGGAAATAAATAGTTGGATTT
1 TGTAAAAGGAAATAAATCGTTGGATTT
119381 TTTAGGAATC
Statistics
Matches: 152, Mismatches: 29, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
38 22 0.14
39 78 0.51
40 15 0.10
42 1 0.01
43 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 10 0.07
49 4 0.03
50 18 0.12
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (39 bp):
TGTAAAAGGAAATAAATCGTTGGATTTAGTTTCCTATTT
Found at i:119310 original size:50 final size:48
Alignment explanation
Indices: 119235--119332 Score: 142
Period size: 50 Copynumber: 2.0 Consensus size: 48
119225 TTTGTAAAAG
*
119235 GAAATAACTCGTTGGATTTAGTTTCTTATTTTGTAAAAAGGAAATAAATC
1 GAAATAAATCGTTGGATTTAGTTTCTTATTTTGT-AAAA-GAAATAAATC
* * *
119285 GAAATAAATCGTTTGATTTATTTTCTTGTTTTGTAAAAGAAATAAATC
1 GAAATAAATCGTTGGATTTAGTTTCTTATTTTGTAAAAGAAATAAATC
119333 ATTTGATTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
48 10 0.23
49 4 0.09
50 30 0.68
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (48 bp):
GAAATAAATCGTTGGATTTAGTTTCTTATTTTGTAAAAGAAATAAATC
Found at i:119329 original size:38 final size:39
Alignment explanation
Indices: 119285--119380 Score: 140
Period size: 38 Copynumber: 2.5 Consensus size: 39
119275 GAAATAAATC
* *
119285 GAAATAAATCGTTTGATTTATTTTCTTGTTTTGTAAAA-
1 GAAATAAATCGTTTGATTTATTTTCCTATTTTGTAAAAG
*
119323 GAAATAAATCATTTGATTTATTTTCCTATTTTGTAAAAG
1 GAAATAAATCGTTTGATTTATTTTCCTATTTTGTAAAAG
* *
119362 GAAATAAATAGTTGGATTT
1 GAAATAAATCGTTTGATTT
119381 TTTAGGAATC
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 35 0.69
39 16 0.31
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.46
Consensus pattern (39 bp):
GAAATAAATCGTTTGATTTATTTTCCTATTTTGTAAAAG
Found at i:119424 original size:34 final size:38
Alignment explanation
Indices: 119396--119479 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 38
119386 GAATCTTGTA
119396 TGATTTT-TG-TTTGTAAAAGAAAATGAATCATTGGAT
1 TGATTTTATGATTTGTAAAAGAAAATGAATCATTGGAT
* *
119432 TTATTTTCATGATTTGTAAAAGAAAAT-ATATCACTGGAT
1 TGATTTT-ATGATTTGTAAAAGAAAATGA-ATCATTGGAT
*
119471 TGAATTTAT
1 TGATTTTAT
119480 TTTCTTAGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
36 6 0.15
38 5 0.12
39 29 0.73
ACGTcount: A:0.37, C:0.05, G:0.15, T:0.43
Consensus pattern (38 bp):
TGATTTTATGATTTGTAAAAGAAAATGAATCATTGGAT
Found at i:120750 original size:21 final size:21
Alignment explanation
Indices: 120724--120763 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
120714 ATTTTACATT
*
120724 GAGTGTATCGATACACCTAGA
1 GAGTGTACCGATACACCTAGA
120745 GAGTGTACCGATACACCTA
1 GAGTGTACCGATACACCTA
120764 AGCTCCTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.23
Consensus pattern (21 bp):
GAGTGTACCGATACACCTAGA
Found at i:124070 original size:21 final size:21
Alignment explanation
Indices: 124044--124083 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
124034 ATTTTACACT
*
124044 GAGTGTATCGATACACCTATA
1 GAGTGTACCGATACACCTATA
124065 GAGTGTACCGATACACCTA
1 GAGTGTACCGATACACCTA
124084 AGCTCCTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (21 bp):
GAGTGTACCGATACACCTATA
Done.